G46541


Basic Information

Item Value
gene id G46541
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 9654306 ~ 9655184 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU52918
CACACTTTAGATTAGGGTCCAGTTATCACTATGAATTAACTATTACCTACACCTTTTGCCTCAATAAACTACTAATTACTGCTTAATAATAGTTAGTAAAGTAGTAGTTTTGTTTAGGTATTGGATAAGATTAAGGGATTTTGAATATGGTCATGCAGAATAAGGCATTAATATCTGCTTTACAAGTAATAAACAGCCAATATCCTAGTAATATGCATGCTAATAAGCAACTAGTTAATAGTAAGAAATGGACCCTAAAGTGTTACCATCAATCAATCAATCAATCAATCAATTTCCAGTAAGTACAGAGCCCCTAAATGTGAGAAAAATAATGGCAATAAAACTTTTGTCAATGCTTATGCGTTTTCTCACATACAGTGGGTACGGAAAGTATTCAGACCCCCTTAAATTTTTCACTCTTTGTTATATTGCAGCCATTTGCTAAAATCATTTAAGTTCATTTTTTTCCTCATTAATGTACACACAGCACCCCATATTGACAGAAAAACTGAAATATCACATGGTCCTAAGTATTCAGACCCTTTGCTCAGTATTTAGTAGAAGCACCCTTTTGATTTAATACAGCCATGAGTCTTTTTGGGAAAGATGCAACAAGTTTTTCACACCTGGATTTGGGGATCCTCTGCCATTCCTCCTTGCAGATCCTCTCCACTTCTGTCAGGTTGGATGGTAAACGTTGGTGGACAACCATTTGTAGGTCTCTCCAGAGATGCTCAATTGGGTTTAAGTCAGGGCTCTGGCTGGACCATTCAAGAACAGTCACGGAGTTGTTGTGAAGCCACTCCTTCGTTATTTTAGCTGTGTGCTTAGGGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52918 True 835 lncRNA 0.37 2 9654306 9655184

Neighbor

gene id symbol gene type direction distance location
CI01000006_09569228_09574340 NA coding upstream 79245 9568280 ~ 9575061 (+)
CI01000006_09497508_09511925 NA coding upstream 141586 9496806 ~ 9512720 (+)
CI01000006_09334843_09337295 FAM216A coding upstream 316903 9334801 ~ 9337403 (+)
CI01000006_09320331_09321778 UB2G1, UBE2G1A, UBE2G1, UBE2G1B coding upstream 332528 9320331 ~ 9321778 (+)
CI01000006_09192219_09195918 NA coding upstream 458322 9191897 ~ 9195984 (+)
CI01000006_09712289_09783579 UNC5DA coding downstream 57105 9712289 ~ 9783579 (+)
CI01000006_09836923_09844045 NA coding downstream 181739 9836923 ~ 9846207 (+)
CI01000006_09884959_09889794 NA coding downstream 229255 9884439 ~ 9890289 (+)
CI01000006_09891107_09897750 NA coding downstream 235923 9891107 ~ 9897763 (+)
CI01000006_09910027_09913958 NA coding downstream 254186 9909370 ~ 9914104 (+)
G46524 NA non-coding upstream 51786 9595654 ~ 9602520 (+)
G46525 NA non-coding upstream 66507 9575315 ~ 9587799 (+)
G46530 NA non-coding upstream 108233 9545862 ~ 9546073 (+)
G46519 NA non-coding upstream 116821 9536933 ~ 9537485 (+)
G46507 NA non-coding upstream 143637 9510424 ~ 9510669 (+)
G46526 NA non-coding downstream 164177 9819361 ~ 9829574 (+)
G46565 NA non-coding downstream 195951 9851135 ~ 9851458 (+)
G46566 NA non-coding downstream 196445 9851629 ~ 9851834 (+)
G46569 NA non-coding downstream 201563 9856747 ~ 9857095 (+)
G45416 NA other upstream 819609 8818814 ~ 8834697 (+)
G45355 NA other upstream 1441918 8209555 ~ 8212388 (+)
CI01000006_08198328_08199463 NA other upstream 1454161 8197881 ~ 8200145 (+)
G45336 NA other upstream 1632355 8019342 ~ 8021951 (+)
G45265 NA other upstream 1733951 7883867 ~ 7920355 (+)
G46652 NA other downstream 501395 10156579 ~ 10159251 (+)
G47145 NA other downstream 830174 10485358 ~ 10511806 (+)
G47159 NA other downstream 1761045 11416229 ~ 11521703 (+)
G47318 NA other downstream 1969083 11624267 ~ 11638252 (+)
G48094 NA other downstream 2622436 12277620 ~ 12279541 (+)

Expression


Co-expression Network