XLOC_000726 (zfyve27)


Basic Information

Item Value
gene id XLOC_000726
gene name zfyve27
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 54889733 ~ 54907823 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001208
GTGATCGGCGCTCTTTTCTCCCTGACATCATCGACTCTGGCATCAACACATCGTGCCTGTGAATTGCGGAAGCAGAAGTCGCTGCACATTAGCGAGTTTACCTCTTTTGTATGTAGTTTTATGTATGTTAAATGTTATATTTCTCATCTTTAATCGAATGATATACTTTTAATGACTCTGTAGCAGCAGAAGACGGTGTTTTGAGGATTAAAGCATGCAGTGCTCCGCCTCCTCTCCTCAGGAGCCTCCGCAGGCGAGCGCTGAGCGGCCTGAGCTGACCCAGCTGCCCACTAAAGACCCGTCCTGCGCAGACAGCGCCTCAGACCCGGGCAGCCCCAAAGCTCTGACCTTTGACCTGCTGAACATGGTGATCTGCTTCAAGCGGATGCTGATCTTCCTGGAGCCCATCACAGACACGCTGGAGGTGCTGCGCTACCTGCTGGGATGGAAGATGCCGCTGTTTTCCCTGCTCAGCTGCGTTCTGCTCAACATCCTCTTCCTCACTCTGACTGAAGGCTCGTGGTTCTCTCTGCTCCTGCTGGCCATCTCTGCTCCGGCTGTGCTGGGTTTCCTTGGTGACCGTTGTCAGGGTGCGAGCAGCGAGATGGCTCTCCAGAAGAAGAAACACTACGCAGTGCAGCGGCGAGACCTGCAGACGGTCCACATGAGCAAACAGGAGGCCATGCTGGAGGTCAAGGGCATGCTGAAGCAGATAGATGACCTGTTGACCCAAGCGTGTGTCTATGCAGAGTCTGTGTACAAGGTTTTATACTGGGAGAGCCACGCAGTGTCCTCCATgTTTTACGGTTTTCTCCTGACAGCAGTGTGTCTGCTGTATACGGCTCCAGTGGGTGTGAGTCTGTCAGTAATCAACAGCGCCCTCTTTCTGTGGAACAGAGATTTCTGCAGAGTTCTGTTAAAGCTGAAGGAGTTTGTTCACCCGACTTATGTGGAGCCTGTAGAGGAAACTGAACTGTGTGACTCGGATCAGGCCAATCTGCTGGAGCGCACACCCACCCCCACCAGTGTGGAGGATTTGTCTCCTGGCAATATTGAGGAGGCAGAGGAGGCGGAGCCTGACGATGAGTTCAAAGACGCCATAGAGGACGACGAGGATGTGTCTTCTGGAGTTCCTGAGTTTGACACGGTGTCTGATAACGGGCTGTTGAGCAGAAACGAGCCCATCCGCAGTAAAGTGTCCAAACTCACGGAAAAACTGCGCAAGCGGGTTCCTACCAATGCCACCGGAAATTGTGTTCAGTGCAATTCGGCATTTTCTGTTTTAAAGAAAAGGAGAAACTGCAGTAACTGTGGCATCAGCTTTTGCTCTCGCTGTTGCTCGTATAAGGTGTTCAGATCGACCATGGGAGCCACAGCTCCTGAAGCCCAAAGAGAGACTGTGTTTGTTTGTTCCACTTGTAACACTTTCCTCAGCACCAAGTAGGATTGACCATCATCCTGAAACAATCCACCACTTTCCAAACTTGCAATCCTGTAAAACAAACTTGGGGTGGAACACGTGTTGGCTACTGAAGTGATTCTTGAGGTCTTGTTCCTTCCTTCACATGGAAAACCAAATTCCATCTTCTTATGTTTCCTCTTGAGTTTTTTGTCTGTTCTAAGATTGTGGCCTCCTATTAGCTGCTTACTCTGTGCAAGTCTAATACATCCAAACTGTGATCTCGCCTTGCTAAGAGATCAGATGCTGTGCTTTCATCATTGACATCAATTTCCAGAGTTCTTGGTAGGATATCAGGTTAAAATCAAGGGTCCTGGAAATCTGTTATTACTGTATTATTGCACATTATCCTAAAGAATGCAACAAGACTGTGTAAAAGAGGGGTTATTCGTCAAATGCAATGGACTTTAAGGAATAGTTtagccaaaaaaaatgaaaatgtctcaGCATTTTCTCCgcttcaagtggtttcaaacatatatgctttctttttttaatctgttgaatgcaaaacaaGGTATTTAGCTATAAGATGCatactaggaaaaacaaatattattgaaatcAATTTTTACCTTATCATTCCTCAGTttgtggagggtgagtaaatgatgacagcattttcatttcactatccctttaatattgaTAGCTCTATTATACAGTTTTTTAATGCTGTTTAGTTAACGTGACATCAGTTGTTTATTAAGAAATGGTATTTATCTCTGACTGCAACAACACTCATGATTCATAAACCCTAGCTGCTTTATGCTTGAACCCATAATAGTTGAATCtataatttatttgtgtatttttgtctgACAAGTCCTTAATCGATATATGTGTTTGTGGACATTCTCAGTAAACATTTATAGTAATCAAAGTAATGCTATCATATTAGCCTCTCAGCACAGAAGCGTTTTGCTGATCATATTGCTATTGAAACAATGAGCTGTgttcttttctgtcttttatttatctgtctgtttgtctttaaGCCAAGGTTGAATGTAAAACCAACACTTTATGGGGTATAGAGCTATTTCATATCACTGCTATTTAAACGTAAATTCAGATGTATTGGGGGAATATATCTTGAGTGAAAGCCTGTCCGTTTTCTTTGTCAAAATCTACTGttacattaataaacaatatgaataTG
>TCONS_00001209
GACGATGAGTTCAAAGACGCCATAGAGGTGTGGCCTGTAGTGTATTTGCTACCAAAGGTTCTGAAGAGATGGAGAGCCCGTAAGGACGACGAGGATGTGTCTTCTGGAGTTCCTGAGTTTGACACGGTGTCTGATAACGGGCTGTTGAGCAGAAACGAGCCCATCCGCAGTAAAGTGTCCAAACTCACGGAAAAACTGCGCAAGCGGGTTCCTACCAATGCCACCGGAAATTGTGTTCAGTGCAATTCGGCATTTTCTGTTTTAAAGAAAAGGAGAAACTGCAGTAACTGTGGCATCAGCTTTTGCTCTCGCTGTTGCTCGTATAAGGTGTTCAGATCGACCATGGGAGCCACAGCTCCTGAAGCCCAAAGAGAGACTGTGTTTGTTTGTTCCACTTGTAACACTTTCCTCAGCACCAAGTAGGATTGACCATCATCCTGAAACAATCCACCACTTTCCAAACTTGCAATCCTGTAAAACAAACTTGGGGTGGAACACGTGTTGGCTACTGAAGTGATTCTTGAGGTCTTGTTCCTTCCTTCACATGGAAAACCAAATTCCATCTTCTTATGTTTCCTCTTGAGTTTTTTGTCTGTTCTAAGATTGTGGCCTCCTATTAGCTGCTTACTCTGTGCAAGTCTAATACATCCAAACTGTGATCTCGCCTTGCTAAGAGATCAGATGCTGTGCTTTCATCATTGACATCAATTTCCAGAGTTCTTGGTAGGATATCAGGTTAAAATCAAGGGTCCTGGAAATCTGTTATTACTGTATTATTGCACATTATCCTAAAGAATGCAACAAGACTGTGTAAAAGAGGGGTTATTCGTCAAATGCAATGGACTTTAAGGAATAGTTtagccaaaaaaaatgaaaatgtctcaGCATTTTCTCCgcttcaagtggtttcaaac
>TCONS_00001210
catgaacacaatcaACAGTTTAAGAACACACTCAAATATTCGCGGCAAATTgatgttttttaaatttcaataccgattggtaccgaattccagtatcatgacaaccctactATATAGTAAGAAGAATGTCAGAATTACGTTCATTTTAAAGGTTGTGTGCAGGTTTTCTCATGAGAGGGTGAAGTGGAAGATCTTTTGGTGTTGAGGTGAACATAAAAGCTAACGGGTTCACATCTGTCACCTCTCATCTCTTCTAAATTTCAGTATGATTCATTTATCATTGTGTTTCGATGTGTTATTTCTGGTAGGACGACGAGGATGTGTCTTCTGGAGTTCCTGAGTTTGACACGGTGTCTGATAACGGGCTGTTGAGCAGAAACGAGCCCATCCGCAGTAAAGTGTCCAAACTCACGGAAAAACTGCGCAAGCGGGTTCCTACCAATGCCACCGGAAATTGTGTTCAGTGCAATTCGGCATTTTCTGTTTTAAAGAAAAGGAGAAACTGCAGTAACTGTGGCATCAGCTTTTGCTCTCGCTGTTGCTCGTATAAGGTGTTCAGATCGACCATGGGAGCCACAGCTCCTGAAGCCCAAAGAGAGACTGTGTTTGTTTGTTCCACTTGTAACACTTTCCTCAGCACCAAGTAGGATTGACCATCATCCTGAAACAATCCACCACTTTCCAAACTTGCAATCCTGTAAAACAAAC

Function

symbol description
zfyve27 Predicted to enable protein self-association. Acts upstream of or within axonogenesis. Predicted to be located in endoplasmic reticulum membrane and recycling endosome membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum tubular network and growth cone membrane. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 33. Orthologous to human ZFYVE27 (zinc finger FYVE-type containing 27).

GO:

id name namespace
GO:0072659 protein localization to plasma membrane biological_process
GO:0045773 positive regulation of axon extension biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0048011 neurotrophin TRK receptor signaling pathway biological_process
GO:0007409 axonogenesis biological_process
GO:0031175 neuron projection development biological_process
GO:0071787 endoplasmic reticulum tubular network formation biological_process
GO:0032584 growth cone membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0071782 endoplasmic reticulum tubular network cellular_component
GO:0046872 metal ion binding molecular_function
GO:0043621 protein self-association molecular_function

KEGG:

id description
ko04144 Endocytosis

ZFIN:

id description
ZDB-GENE-061013-502 Predicted to enable protein self-association. Acts upstream of or within axonogenesis. Predicted to be located in endoplasmic reticulum membrane and recycling endosome membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum tubular network and growth cone membrane. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 33. Orthologous to human ZFYVE27 (zinc finger FYVE-type containing 27).

Ensembl:

ensembl_id ENSDARG00000059835

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001208 False 2621 mRNA 0.44 12 54889733 54907823
TCONS_00001209 False 914 mRNA 0.43 6 54901028 54907137
TCONS_00001210 True 708 lncRNA 0.42 4 54905750 54906707

Neighbor

gene id symbol gene type direction distance location
XLOC_000725 si:ch211-196h16.5 coding upstream 232 54865552 ~ 54889501 (+)
XLOC_000724 si:ch211-196h16.4 coding upstream 28145 54834119 ~ 54861588 (+)
XLOC_000723 nlrc6 coding upstream 104550 54766943 ~ 54785183 (+)
XLOC_000722 pi4k2a coding upstream 134177 54737353 ~ 54755556 (+)
XLOC_000721 NA coding upstream 188978 54698173 ~ 54700755 (+)
XLOC_000727 golga7ba coding downstream 1072 54908895 ~ 54931913 (+)
XLOC_000728 r3hcc1l coding downstream 40236 54948059 ~ 54958463 (+)
XLOC_000729 NA coding downstream 51669 54959492 ~ 54985297 (+)
XLOC_000730 si:ch211-196h16.12 coding downstream 94760 55002583 ~ 55007223 (+)
XLOC_000731 lgalsla coding downstream 172974 55080797 ~ 55089987 (+)
XLOC_000715 NA non-coding upstream 276254 54611838 ~ 54613479 (+)
XLOC_000712 NA non-coding upstream 420444 54277243 ~ 54469289 (+)
XLOC_000713 NA non-coding upstream 485586 54401933 ~ 54404147 (+)
XLOC_000710 CABZ01067150.1 non-coding upstream 703577 54186039 ~ 54186156 (+)
XLOC_000733 CU467849.1 non-coding downstream 220642 55128465 ~ 55128579 (+)
XLOC_000735 NA non-coding downstream 276941 55184764 ~ 55191262 (+)
XLOC_000741 NA non-coding downstream 406651 55314474 ~ 55579436 (+)
XLOC_000742 NA non-coding downstream 418743 55326566 ~ 55343851 (+)

Expression


Co-expression Network