tmem38a (tmem38a,LOC107730482,LOC107658508,LOC107751025)


Basic Information

Item Value
gene id tmem38a
gene name tmem38a,LOC107730482,LOC107658508,LOC107751025
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 17247081 ~ 17253787 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007233135.2
TGCGGTGTGGATGAGGTAGGTGCTGCTGTGTATTAATAGGAGGGTTTATGTGTCCAGAGTTGCTTTACTCGAGGAGACGGACACGGGGGGCTTGAGGCGAGCCGCCTCAGTctgacactgcacacactcagcTTTCTGTTCATGTGCTAGTACAGCACTGTCACCAGCAGCACAACCATGGAGGTGTTGGATATCCTAAATTTGGGCGAAATTGCCCAGTATTTTTCAAAAATGGCCATGTTTCCAGTTTTTGATGTCGCCTATTACATCGTATCCATACTGTACCTCAAGTATGAACCAGGCTCAGTGGAGGTGTCCCGCAAAAGCCCTGTAGCCTCCTGGCTCTGTGCAATGCTCTACTGCTTCGGGAGCTACATCCTCGCAGACATCATGCTCGGACACTCCCCCATCGACTATTTCCATAATAACAGCCACATCCTCCTGGCTTCAGCTGTTTGGTATCTCATCTTTTTCTGTCCCTTTAACTTGTTCTACAAATGTGTCGCGTTCCTGCCCATTAAGCTGGTGCTGGTGGCCATGAAAGAGGTGGTCCGCACTCGCAAAATTGCTGCTGGAGTTCACCATGCTCACCACGCCTATCACCATGGCTGGTTCATCATGGTTATTACTGGCTATGTCAAGGGGTCAGGAGTAGCTCTCATGTCAAATTTCGAGCAACTGCTGCGTGGAGTGTGGAGGCCAGAGACCAATGAAATTCTCAGTATGTCATTCCCTACCAAAGCCAGTCTGTACGGAGCCATTCTGTTTACACTCCAGGAGTCCCACTGGCTTCCTGTGTCAAAGAGCACCCTCATCTGCATCTTCACTCTGTTCATGGCTACTTCCAAGGTGATAATGACCGCTCGCCACTCTCACGGATctccctttgctctgattgaGTCCTGGGTGTGCCACCTGCTGTTTGGCTCTCCTCTTGGTGGCGAAGATCATCATGACCATCATCACACCGCCCCCGCAGCTGCCGCTGCCCCTGCATCTCCAGCCAAAACCAAGGAGGAACTGAGCGAAGCCACACGCAAGAGGAAGTCCAAGAAAGCAGAGTAGACACACAACTTCTTTTTAAAAggaaaccaaacaaacaaaaaattcaTCTAACCAGCTACTGGTGTCTCAAGTCCCCTCTCAGGCCATTTTTGATACAGAGGTTTTTCATTTGTCTGCAGAAAAGGGGAGGCGGAGTCTCAGGAGTCTGATGGTAACCAATGCAAGTTTCTTAATGGTGCTTAAAGTGACAGATACTACATAGGGACTCTGTAAATAGCTCACCAACACTTCCCACTCTTCCTGTTAATATGCAATAAGTGTATGTCTCTATTTATTATGTACATTGCTTTTCATCTGTGGAACTCCATTCTCCTGTCACCAGAAGTGTGTGGTGATCTACAGTATGGACATTAAATCACTGGATTAATAAGCCCAATGATTGGTGAATCTGCCCTAGCCCATTTAGATGCAGAAAAGCACATTTCAGGCAGCAAGGGAAATCAGAAGGAACCGCCAAAGTTAGGACCTAAATTTGACTATACTTGGCTGCTTTTTATGTCATATTGCATTTGACAATACagtattttcaaaaataaatctattttcCAATCAGA

Function

symbol description
tmem38a Predicted to enable potassium channel activity. Predicted to act upstream of or within potassium ion transmembrane transport. Predicted to be located in nuclear membrane and sarcoplasmic reticulum membrane. Predicted to be integral component of membrane. Is expressed in adaxial cell; musculature system; myotome; and somite. Orthologous to human TMEM38A (transmembrane protein 38A).

NR:

description
PREDICTED: trimeric intracellular cation channel type A

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0033017 sarcoplasmic reticulum membrane cellular_component
GO:0031965 nuclear membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005267 potassium channel activity molecular_function

KEGG:

id description
K24013 TMEM38, TRIC; trimeric intracellular cation channel

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007233135.2 True 1619 mRNA 0.47 6 17247081 17253787

Neighbor

gene id symbol gene type direction distance location
gamt gamt,LOC107747770,LOC107685360,LOC107757934,LOC107597217 coding upstream 189974 17053411 ~ 17057107 (+)
abhd8 abhd8 coding upstream 219957 17018329 ~ 17027124 (+)
ano8 ano8,ano8b,LOC107680545,LOC107747324 coding upstream 236556 16975644 ~ 17010525 (+)
plvap NA coding upstream 300104 16945290 ~ 16946977 (+)
babam1 babam1,LOC107597198 coding upstream 310175 16931500 ~ 16936906 (+)
comp comp,LOC107733073,LOC107665851,LOC107680551,LOC107747026 coding downstream 5578 17259365 ~ 17269526 (+)
ddx49 ddx49,LOC107757937,LOC107747066 coding downstream 48292 17302079 ~ 17307013 (+)
lsm4 lsm4,LOC107680485 coding downstream 53821 17307608 ~ 17310257 (+)
dnase2b NA coding downstream 905770 18159557 ~ 18166817 (+)
rpf1 rpf1 coding downstream 915906 18169693 ~ 18175127 (+)
G43363 pex11g non-coding upstream 44241 17200297 ~ 17202840 (+)
G43254 NA non-coding upstream 164073 17080351 ~ 17083008 (+)
G43253 NA non-coding upstream 166786 17076692 ~ 17080295 (+)
G43252 LOC108435930,LOC107597167,LOC107757917,LOC107685268 non-coding upstream 174849 17065347 ~ 17072232 (+)
G43251 ndufs7,LOC107685366,LOC107747413,LOC107680537,LOC107597168,LOC107553547 non-coding upstream 183110 17058409 ~ 17063971 (+)
G43382 NA non-coding downstream 18512 17272299 ~ 17275365 (+)
LOC111192514 NA non-coding downstream 197253 17451040 ~ 17478044 (+)
G43414 NA non-coding downstream 229889 17483676 ~ 17486811 (+)
G43483 NA non-coding downstream 501521 17755308 ~ 17756157 (+)
G43561 uric,LOC103030682,LOC108430123,LOC100136464,LOC105895190,LOC103392251,LOC102300275,LOC102208991 non-coding downstream 899073 18152860 ~ 18157853 (+)
G43360 apba3,si:ch73-40i7.5,LOC108271288,LOC105910839,LOC107750992 other upstream 50965 17193538 ~ 17196116 (+)
dda1 dda1,LOC105913185,LOC107685208,LOC105012003 other upstream 229225 17012467 ~ 17017856 (+)
LOC111192574 NA other upstream 296721 16948380 ~ 16950360 (+)
LOC103044285 NA other upstream 427830 16816601 ~ 16819251 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other upstream 800794 16440931 ~ 16446287 (+)
adgrl2 adgrl2 other downstream 379309 17633096 ~ 17768954 (+)
G43537 NA other downstream 758386 18012173 ~ 18014499 (+)
prkacb prkacb,LOC108411205,LOC108267323,LOC103034112,LOC107745335,LOC107669012 other downstream 869959 18123746 ~ 18143539 (+)
samd13 samd13,LOC107592550 other downstream 891412 18145199 ~ 18152349 (+)
G43568 LOC108270632,LOC108261872 other downstream 933252 18187039 ~ 18240232 (+)

Expression


Co-expression Network