ddx49 (ddx49,LOC107757937,LOC107747066)


Basic Information

Item Value
gene id ddx49
gene name ddx49,LOC107757937,LOC107747066
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 17302079 ~ 17307013 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007233140.3
ACTAACATGTTAAATGTGTCTAAAGTGTACAGTATAATCACAGGTCATTCCAGGCTGCGTTCAGTCTGGAAACCCCTGGTTATTTTAACCTGCGCAGCCCCTTTAGCGTGAGCCGCCCACCGAGCCCCGTCTCGAGACGCAGTTCGATGACGTAGTCTGTCCACGCGCCCGGCTGAAGGCTGCACGCGGGTCTCGGTTTCTCCTCTCTCGCGctgtaaatacagaaaaacagcgCGGTTGAAAGCAAGTCGGATTCGGACTGCGTGTGTAGGGTGGGGTTATAATCCGATTCGATTAAAGTTAAATCAGTAATGGAGGCTTTCGCGGCGCTCGGCCTGTCCGACTGGCTGATCCAGCAGTGTAAACAAATGGGCATCACCCGGCCGACTCCCGTCCAGCAGAGCTGCGTACCGGCCATTCTAGCAGGTCGGGATTGTATGGGCTGTGCGAAAACTGGAAGCGGCAAAACGGCAGCTTTTGTTTTACCAGTGCTTCAGAAACTGGCGGAGGATCCCTATGGAATCTTCTGCTTGGTGTTGACACCCACAAGgGAACTGGCCTACCAGATAGCTGAACAGTTCCGGGCACTAGGGAAACCACTGGGTTTGAGAGACTGCATCATAGTTGGGGGAATGGACATGGTGGCCCAGGGTCTGGAGCTGTCTAAAAAGCCACACATTGTTGTTGCCACTCCGGGGAGATTAGCAGATCACATTCGGAGTTCTGACACATTCAACATGAAGAGAATCAAATTTTTGATCTTGGATGAAGCAGATCGTTTGCTTGAGCAGGGATGCACAGACTTCACCAAGGACCTGGAAGTTATTCTCAGTGTTGTGCCAGCAAAACGGCAAACGCTGTTGTTCAGCGCCACACTAACGGACACACTGCAGGAGCTAAAAACCATTGCTATGAATGAGCCTTTCTTCTGGGAGAACAAGTCAGAGGTCCGAACAGTGGATGAGCTTGATCAAAGATACATCCTTACACCTGAGAAAGTCAAAGATGCTTACTTGGTGCATCTTATTCAGAAAATCCAAGATGAACATGATGACTGGTCAGTCATGATTTTCACCAACACATGCAAaaATTGCCAAATTCTTACAATGATGCTTCGTGAATTTAAATTTCCCGCAATCTCCCTGCATTCCATGATGAAACAGaGACAACGATTTGCAAACCTTGCCAAGTTCAAGTCCAATGTTTTCAAGATCCTGATAGCCACAGATGTTGCTGCCAGgggTCTGGATATTCCTACAGTGCAGGTTGTCATTAATCATAATACTCCAGGACTGCCTAAAATCTACATTCATAGAGTGGGCAGGACTGCCCGTGCCGGAAGAAATGGTGTTTCAATTACACTGGTCACACAGTATGACATTCATCTGGTCAATGCTATTGAGGAGCAGATCCagacCAAGCTAAAGGAGTACCCAGTGGAAGAGAAGGAGGTGCTAAAGATCCTTACCCAAGTGAATGTGACGCGACGACAGTGTGAAATTAAATTGGAGTCAACAGACTTTGGGGagaaaaaggaaataaacaaaaagaagaaaatgatcCTAGAAGGGAAAGATCCTGACtttgaagagaagagaaaaaatgaacttgctaaaagaaaaaagggaaaagcaGAAGGAAAGGGGAGAATTCAGGAAATTATTCATCAGAAGAAGAAAGGAAAGCTTgttaaaaagaaaggaaagaaaaccaAAGCCACACTTCCCGGACAGTCATAAATCTGCATGTTTAGCATTGACCGCTGTACATTTTTGTGCATATGTGAATAAATGGATCATTTTTTGCAAaggtttaatttgtattaaatgtatttttaattaacattttgtaaatgtttactTGTTGACACAATAAATTGCCATTAATTAAAA

Function

symbol description
ddx49 Predicted to enable several functions, including ATP binding activity; RNA helicase activity; and nucleic acid binding activity. Predicted to be involved in rRNA processing. Predicted to be active in nucleus. Is expressed in female organism. Orthologous to human DDX49 (DEAD-box helicase 49).

NR:

description
probable ATP-dependent RNA helicase DDX49

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K14778 DDX49, DBP8; ATP-dependent RNA helicase DDX49/DBP8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007233140.3 True 1892 mRNA 0.45 13 17302079 17307013

Neighbor

gene id symbol gene type direction distance location
comp comp,LOC107733073,LOC107665851,LOC107680551,LOC107747026 coding upstream 32553 17259365 ~ 17269526 (+)
tmem38a tmem38a,LOC107730482,LOC107658508,LOC107751025 coding upstream 48292 17247081 ~ 17253787 (+)
gamt gamt,LOC107747770,LOC107685360,LOC107757934,LOC107597217 coding upstream 244972 17053411 ~ 17057107 (+)
abhd8 abhd8 coding upstream 274955 17018329 ~ 17027124 (+)
ano8 ano8,ano8b,LOC107680545,LOC107747324 coding upstream 291554 16975644 ~ 17010525 (+)
lsm4 lsm4,LOC107680485 coding downstream 595 17307608 ~ 17310257 (+)
dnase2b NA coding downstream 852544 18159557 ~ 18166817 (+)
rpf1 rpf1 coding downstream 862680 18169693 ~ 18175127 (+)
ctbs ctbs coding downstream 869934 18176947 ~ 18181454 (+)
LOC111192515 NA coding downstream 892326 18199339 ~ 18203357 (+)
G43382 NA non-coding upstream 26714 17272299 ~ 17275365 (+)
G43363 pex11g non-coding upstream 99239 17200297 ~ 17202840 (+)
G43254 NA non-coding upstream 219071 17080351 ~ 17083008 (+)
G43253 NA non-coding upstream 221784 17076692 ~ 17080295 (+)
G43252 LOC108435930,LOC107597167,LOC107757917,LOC107685268 non-coding upstream 229847 17065347 ~ 17072232 (+)
LOC111192514 NA non-coding downstream 144027 17451040 ~ 17478044 (+)
G43414 NA non-coding downstream 176663 17483676 ~ 17486811 (+)
G43483 NA non-coding downstream 448295 17755308 ~ 17756157 (+)
G43561 uric,LOC103030682,LOC108430123,LOC100136464,LOC105895190,LOC103392251,LOC102300275,LOC102208991 non-coding downstream 845847 18152860 ~ 18157853 (+)
G43564 NA non-coding downstream 859870 18166883 ~ 18167890 (+)
G43360 apba3,si:ch73-40i7.5,LOC108271288,LOC105910839,LOC107750992 other upstream 105963 17193538 ~ 17196116 (+)
dda1 dda1,LOC105913185,LOC107685208,LOC105012003 other upstream 284223 17012467 ~ 17017856 (+)
LOC111192574 NA other upstream 351719 16948380 ~ 16950360 (+)
LOC103044285 NA other upstream 482828 16816601 ~ 16819251 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other upstream 855792 16440931 ~ 16446287 (+)
adgrl2 adgrl2 other downstream 326083 17633096 ~ 17768954 (+)
G43537 NA other downstream 705160 18012173 ~ 18014499 (+)
prkacb prkacb,LOC108411205,LOC108267323,LOC103034112,LOC107745335,LOC107669012 other downstream 816733 18123746 ~ 18143539 (+)
samd13 samd13,LOC107592550 other downstream 838186 18145199 ~ 18152349 (+)
G43568 LOC108270632,LOC108261872 other downstream 880026 18187039 ~ 18240232 (+)

Expression


Co-expression Network