G47079


Basic Information

Item Value
gene id G47079
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 10303952 ~ 10304186 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU53523
TATCAATATGGTGCAAGATTATCCTATTCAAATCAATTTGATTAACGAGTTGGGTCAAAAGTAATCTAAAGGTATCTTTCTAGGTGTAATCTAAAAGTATCTTTCTTAATAAAAAAGTAGTCAGATTACATTACCTTAAATGTGTAAAGTAATGGATTACGTTACTAACTACAATTTTTGTCATGTAATTTGGAATGAGTAACTGATTACAATTTGTAAGTAATCTATCCAGCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53523 True 235 lncRNA 0.28 1 10303952 10304186

Neighbor

gene id symbol gene type direction distance location
CI01000006_10177090_10192651 NA coding upstream 110433 10177090 ~ 10193519 (+)
CI01000006_09998680_10008491 LHX5 coding upstream 294904 9998680 ~ 10009048 (+)
CI01000006_09918611_09921465 MZT2B coding upstream 382159 9918611 ~ 9921793 (+)
CI01000006_09910027_09913958 NA coding upstream 389848 9909370 ~ 9914104 (+)
CI01000006_09891107_09897750 NA coding upstream 406189 9891107 ~ 9897763 (+)
CI01000006_10363884_10364804 NA coding downstream 59610 10363796 ~ 10365571 (+)
CI01000006_10518326_10566504 SFSWAP coding downstream 214140 10518326 ~ 10566504 (+)
CI01000006_10574971_10578629 NA coding downstream 270422 10574608 ~ 10578964 (+)
CI01000006_10593624_10605226 NA coding downstream 289058 10593244 ~ 10606273 (+)
CI01000006_10707037_10743311 MMP17, MMP17A coding downstream 402758 10706944 ~ 10743594 (+)
G47062 NA non-coding upstream 26584 10277124 ~ 10277368 (+)
G47054 NA non-coding upstream 35318 10264623 ~ 10268634 (+)
G47041 NA non-coding upstream 66423 10237327 ~ 10237529 (+)
G46754 NA non-coding upstream 73440 10230283 ~ 10230512 (+)
G46750 NA non-coding upstream 75826 10227913 ~ 10228126 (+)
G47102 NA non-coding downstream 39127 10343313 ~ 10360367 (+)
G47106 NA non-coding downstream 99088 10403274 ~ 10481243 (+)
G47108 NA non-coding downstream 104690 10408876 ~ 10462424 (+)
G47140 NA non-coding downstream 158276 10462462 ~ 10483165 (+)
G47148 NA non-coding downstream 189163 10493349 ~ 10495939 (+)
G46652 NA other upstream 144701 10156579 ~ 10159251 (+)
G45416 NA other upstream 1469255 8818814 ~ 8834697 (+)
G45355 NA other upstream 2091564 8209555 ~ 8212388 (+)
CI01000006_08198328_08199463 NA other upstream 2103807 8197881 ~ 8200145 (+)
G45336 NA other upstream 2282001 8019342 ~ 8021951 (+)
G47145 NA other downstream 181172 10485358 ~ 10511806 (+)
G47159 NA other downstream 1112043 11416229 ~ 11521703 (+)
G47318 NA other downstream 1320081 11624267 ~ 11638252 (+)
G48094 NA other downstream 1973434 12277620 ~ 12279541 (+)
G48081 NA other downstream 2072820 12377006 ~ 12384827 (+)

Expression


Co-expression Network