slc35c1 (slc35c1)


Basic Information

Item Value
gene id slc35c1
gene name slc35c1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 1865392 ~ 1871930 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007236234.3
TCTAGGCCCCATGTGTAGAGTACAACCCAGAAACCCACAAACTAAACTTTCTGGTTTCTAGTTCCGCGTGATCATGTGCTCTTTGGGAAAGCATTGCACTGTAACTGTATGAAGGTACATGTCCTCCTAGTCCTTgtctgtttaattaattaattagtttacTCCGTGCACAGTCTATTACACGAGTCTTTATGCAGGCTTCTGATGTTTAAAACAGctgaatgttttaaatatgttcaaCGCAGTCGAGCCTGTTGTGGTGACGTAGGGGGCCTCTTGGCTATCCAATCAGCTGCTTGTGCGTTTCATCCACTAACCAATCAGATGCGTTGGCTAGCATATTAGCTTTAGCATCGCTGCTAGTTTAGCCGGGATTTCAATGCAGACAGTATGTTAGCAGCAGCATTTTGTTGTTCTGCTCTGTTCACTGTTCCTAAATCAGTACAACGGAAAGGCTTAGTATTGTTATATGTGCCTCAGCGCGGATATAGGCTCGCTATCCCCGCTGCTCTGCTCTGATAGCTACAATAGCTTTAGCATCGCTGCTAACGCGAGCCTGTTAGCTTAGCTGGTTAGCATTGTGTCGCAGGTCAGAGTTCAGAGTTGATATGAGCTCAGCGTCACTCTGAGCCGCTCAGCGCGGGGGAGAGGCTAGCGGATACCGGCGGCGTTAGGCTGGAGCTAGGCTAGCTGAACCAGATATGGAAGGTCTACCAGAGATCTGAGCTGTTTTACCTACAGTAGATCAGGTTTATCTGCTGTGGGCGATATACCGAGCCTGGGAGCGGTTTAATGGATCGGTTTGTTGGATCCGTTTAACTTAACGTTAGATGATAAGTGTGAGGAACAGTTTAGAGGATCAGTGAAATGGAGTAGTTTAGAGGAGCAGTGTGAAGATCAGTTTAGAGGAACAGTTTAATGGAtctgtttagatgatcagttcaGGGGAGCAGTGTGAGCATCAGCGAGTGAGGGCATCTGAGGTGTGGAATGGCTGGGCTGTGTGAAGTTTAGAATTTAGTCTTCTGCTTATGCTCTCCTGGTCTCTcaacatgaacaggattcagcTGAAACGCTCCAGGATCTTGAGGATGGCTCTGAATGACTCGGGTCCTGCGGATCAGGAGGGCAGGGAGCCTTTCTTGGTCCGGGCGGTGAAGATAGCCCTGGTGGTGGCTCTCTACTGGTTCGTGTCCATCACGATGGTGTTCCTCAACAACTACCTGCTGGACAGTAAGGACCTGGACGCCCCGCTCTTCGTCACCTTCTTCCAGTGCAtggtgtctgtctgcctgtgcGGGGTCATGAACGTGCTCTCCATCATGTACCCATCCTGCGTGGACTTCCCCTCCATCAAAGTGGACCTGAAGGTGTCCCGGGAGATCATGCCCCTGTCCGTGGTCTTCATCTCCATGATCACCTTCAATAACCTGTGCCTGAAGAACGTGGGGGTCGCCTTCTACACCGTGGGTCGGTCCCTGAGCACGGTCTTCAACGTGCTGCTGTCCTACGTGATCCTGAAGCAGACCACCTCCATGTACGCGATGCTGTGCTGTGGGGTCATCCTTGGTGGTTTCTGGCTCGGTGTGGATCAGGAAGGTGAAGCGGGCTCCCTCTCGTGGTCCggtgtgttttttggtgttcTTGCCAGTGCCTGCGTCTCCCTAAACGCCATCTACACAAAGAAGGTGATGCCAGTTGTGGACGGAAGCATCTGGAAGCTGTCCTACTACAACAACCTAAACGCCTGCGCCCTGTTCCTACCTCTTATGATCGTGTTCGGGGAGTTTGGACGCCTGGCTTCGTTCTCCCAGCTATTGAACATGAACTTTTGGGGTATGATGGTGGTGGGTGGAGTCTTTGGCTTTGCCATTGGTTATGTTACAGGCCTGCAGATAAAGTACACCAGTCCGTTAACGCACAATGTGTCTGGCACAGCCAAGGCGTGTGCTCAGACTGTGCTGGCAGTGATGTATTACCACACCAGCAAAAGCGGACTGTGGTGGACCAGTAACCTAATGGTGCTGGGAGGATCTTCTGCATACACGTGGGTCAAAGGCCTGGAGATGAAGAaaccttctcctcctcctcgggAATCTTCAGAAGATGAAGAGAAGCTGTTAAAAGGGGACTCTGGagtgtaaaagaaagaaaaactctCTCTTTCGTGCtggaatgtaaaaaagaaacataatgTTGTCAtcaagatgatgatgaagatgaactTCGCTGTTTGGCGAAAAGGGACCAGTGGGGAAAAACAGTCCATTTGGAAAAGAAATTAgaatcatatatttttaagaaaagcTCCAGCATTTTTCAACCTATGTCAATGTCTTTTCCTgcttctgtactgtactgttgaAACACAGACAATTGTTTCAGcacattttacaatatatagaGCTGCAAGAACTAAAAGCTTGTTTACTTTAAACACATATGTATGATGGAAGTCAATGAGCAGTTAGTCgatattttacacaaattaacCTGAGGAATATTGTGGCTGTGAAGTGAAGTACACAATATTAACAGCTGTTACTCTCAAAATGACCGAATGCAGTTTTGGAACAGTCACTGTGTTAGTGGTGTACTATATCATCACTGTTATGCAACAACCATGtgtctctatttttttgttttacacttaTAAATCTTGTAGgtgttctttatattgtattcaagttttatgtttaatggaccaataatcattttttttttttttttttacattttggagACGACAACAAAATAAGGGCCAACTTTTATGTAAAAATTCATGAATCAGTACTTTCCCATTATTAGCTTGCGTCAGCCTTCGCCAGTCACATAAACAGACCATAGCATTGGTGTTTGTGCGAGACAACATGCAAAAacaggggaaaaaaaggaaaactgaCTAGGCAAGATGCTAGATCCAGTGTCTGAACCTGCAGTTAGTGTTTCTGCTGGATaatgagcagcagcagcaaacaCAATACAGTcttgtttttaactgtacagggCTGCTGCTATTTCCTCATTCAGTTGCTGTAGTGACATACAGTATCTAACAAATGAGCACACCCCTCACacttttgtaattattttattaaatactttcatgggacaacactgaagatatgacactttgatacagtgTGAAGTAACAGTGTAAATATACTGCTCCTTCagaataactcaacacacacaaccattaatgtctaaaccccGACAACAAAACTGAGTGAAAATAGCCAAATTATGGCCAGTTTGCCTCTTTCCTTCCCTGGGCTCATGTAACTTGTTAGTGTTACAAGGTCTAAGTTGTACATGGGGCACACGTGTGTTAAATTTGGTGTGATcactttatttcacattttaatctgGACGCTAACTTAGGCTGTGcaattaactgtatttttaacgTTGCAATATTTGTTTGCAACAACAGAGGGAGATTGTAAGATTGTAATCATGTGACATAACTAGACTgaaggtagagcgaggtagaggttTATAGTGAACACACAAACCAGACTTCCTCATTCctaatgctgaaaaaaatcagatctaaaATTGATATCAAGAAATCTTAACGGTATTATCACACCACACATTTTTTCGATATTGTGCACCCCTATTGCCAACATGCTCAGAAACCTGTAATAACCCTGCGCACAACACTGTGCTCGTCAcgatttactgttttctttcctgAAAAAACACTTCCTCCTCTGTTGCACACATTCCAGCTTTATTTACAGGCATTTTTTTTCACACGGATGTGTACTGACTCAGCATCTAgccattgacttccattaatcTATGGCTTTTTTGTGggatttctcagtgttttcagtgAAACATGTTGATGTTATTGTCTGTGGGAATCAACTGTATATTACAAGTGCAATAGATAGAAGTTCCGTTGGTTGATAAACAAACTTTtgggtttatttgtttataataaaCCAGGAAGATCCAGTACTGGTGCAAACTTTAGTGAGACTAATGTCTCATATACTGGGTGTTAATGTTATCTTTAAGTTAGTCTATATGGGTTTTGCACtacatgtgcgtgtgtgtatgtgtgtgtttgtgtgtatattatttGACCACACTTGAACTGAAAACCTTATTTTTTCTTAGTAAAGTAACTTGATTTAAAATGCCTTGtaataagtataattattaaataattttttgggAGA
>XM_007236235.3
TATACCTGTTTCAGTGTTATTGATGCGGTCCTGCAGGTAAGTCCGGGTCTGTGCTACCTGCCTGCCTGCTTTCTGAAGGAGgagttttaatacatttacttcCTCATCTGACAGCAGCGGGTCCGGAAGGCAGCTATTCATGACTGTATGATACAATAAGgattcagcTGAAACGCTCCAGGATCTTGAGGATGGCTCTGAATGACTCGGGTCCTGCGGATCAGGAGGGCAGGGAGCCTTTCTTGGTCCGGGCGGTGAAGATAGCCCTGGTGGTGGCTCTCTACTGGTTCGTGTCCATCACGATGGTGTTCCTCAACAACTACCTGCTGGACAGTAAGGACCTGGACGCCCCGCTCTTCGTCACCTTCTTCCAGTGCAtggtgtctgtctgcctgtgcGGGGTCATGAACGTGCTCTCCATCATGTACCCATCCTGCGTGGACTTCCCCTCCATCAAAGTGGACCTGAAGGTGTCCCGGGAGATCATGCCCCTGTCCGTGGTCTTCATCTCCATGATCACCTTCAATAACCTGTGCCTGAAGAACGTGGGGGTCGCCTTCTACACCGTGGGTCGGTCCCTGAGCACGGTCTTCAACGTGCTGCTGTCCTACGTGATCCTGAAGCAGACCACCTCCATGTACGCGATGCTGTGCTGTGGGGTCATCCTTGGTGGTTTCTGGCTCGGTGTGGATCAGGAAGGTGAAGCGGGCTCCCTCTCGTGGTCCggtgtgttttttggtgttcTTGCCAGTGCCTGCGTCTCCCTAAACGCCATCTACACAAAGAAGGTGATGCCAGTTGTGGACGGAAGCATCTGGAAGCTGTCCTACTACAACAACCTAAACGCCTGCGCCCTGTTCCTACCTCTTATGATCGTGTTCGGGGAGTTTGGACGCCTGGCTTCGTTCTCCCAGCTATTGAACATGAACTTTTGGGGTATGATGGTGGTGGGTGGAGTCTTTGGCTTTGCCATTGGTTATGTTACAGGCCTGCAGATAAAGTACACCAGTCCGTTAACGCACAATGTGTCTGGCACAGCCAAGGCGTGTGCTCAGACTGTGCTGGCAGTGATGTATTACCACACCAGCAAAAGCGGACTGTGGTGGACCAGTAACCTAATGGTGCTGGGAGGATCTTCTGCATACACGTGGGTCAAAGGCCTGGAGATGAAGAaaccttctcctcctcctcgggAATCTTCAGAAGATGAAGAGAAGCTGTTAAAAGGGGACTCTGGagtgtaaaagaaagaaaaactctCTCTTTCGTGCtggaatgtaaaaaagaaacataatgTTGTCAtcaagatgatgatgaagatgaactTCGCTGTTTGGCGAAAAGGGACCAGTGGGGAAAAACAGTCCATTTGGAAAAGAAATTAgaatcatatatttttaagaaaagcTCCAGCATTTTTCAACCTATGTCAATGTCTTTTCCTgcttctgtactgtactgttgaAACACAGACAATTGTTTCAGcacattttacaatatatagaGCTGCAAGAACTAAAAGCTTGTTTACTTTAAACACATATGTATGATGGAAGTCAATGAGCAGTTAGTCgatattttacacaaattaacCTGAGGAATATTGTGGCTGTGAAGTGAAGTACACAATATTAACAGCTGTTACTCTCAAAATGACCGAATGCAGTTTTGGAACAGTCACTGTGTTAGTGGTGTACTATATCATCACTGTTATGCAACAACCATGtgtctctatttttttgttttacacttaTAAATCTTGTAGgtgttctttatattgtattcaagttttatgtttaatggaccaataatcattttttttttttttttttacattttggagACGACAACAAAATAAGGGCCAACTTTTATGTAAAAATTCATGAATCAGTACTTTCCCATTATTAGCTTGCGTCAGCCTTCGCCAGTCACATAAACAGACCATAGCATTGGTGTTTGTGCGAGACAACATGCAAAAacaggggaaaaaaaggaaaactgaCTAGGCAAGATGCTAGATCCAGTGTCTGAACCTGCAGTTAGTGTTTCTGCTGGATaatgagcagcagcagcaaacaCAATACAGTcttgtttttaactgtacagggCTGCTGCTATTTCCTCATTCAGTTGCTGTAGTGACATACAGTATCTAACAAATGAGCACACCCCTCACacttttgtaattattttattaaatactttcatgggacaacactgaagatatgacactttgatacagtgTGAAGTAACAGTGTAAATATACTGCTCCTTCagaataactcaacacacacaaccattaatgtctaaaccccGACAACAAAACTGAGTGAAAATAGCCAAATTATGGCCAGTTTGCCTCTTTCCTTCCCTGGGCTCATGTAACTTGTTAGTGTTACAAGGTCTAAGTTGTACATGGGGCACACGTGTGTTAAATTTGGTGTGATcactttatttcacattttaatctgGACGCTAACTTAGGCTGTGcaattaactgtatttttaacgTTGCAATATTTGTTTGCAACAACAGAGGGAGATTGTAAGATTGTAATCATGTGACATAACTAGACTgaaggtagagcgaggtagaggttTATAGTGAACACACAAACCAGACTTCCTCATTCctaatgctgaaaaaaatcagatctaaaATTGATATCAAGAAATCTTAACGGTATTATCACACCACACATTTTTTCGATATTGTGCACCCCTATTGCCAACATGCTCAGAAACCTGTAATAACCCTGCGCACAACACTGTGCTCGTCAcgatttactgttttctttcctgAAAAAACACTTCCTCCTCTGTTGCACACATTCCAGCTTTATTTACAGGCATTTTTTTTCACACGGATGTGTACTGACTCAGCATCTAgccattgacttccattaatcTATGGCTTTTTTGTGggatttctcagtgttttcagtgAAACATGTTGATGTTATTGTCTGTGGGAATCAACTGTATATTACAAGTGCAATAGATAGAAGTTCCGTTGGTTGATAAACAAACTTTtgggtttatttgtttataataaaCCAGGAAGATCCAGTACTGGTGCAAACTTTAGTGAGACTAATGTCTCATATACTGGGTGTTAATGTTATCTTTAAGTTAGTCTATATGGGTTTTGCACtacatgtgcgtgtgtgtatgtgtgtgtttgtgtgtatattatttGACCACACTTGAACTGAAAACCTTATTTTTTCTTAGTAAAGTAACTTGATTTAAAATGCCTTGtaataagtataattattaaataattttttgggAGA

Function

symbol description
slc35c1 Predicted to enable GDP-fucose transmembrane transporter activity and antiporter activity. Predicted to be involved in GDP-fucose import into Golgi lumen and protein O-linked fucosylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIc. Orthologous to human SLC35C1 (solute carrier family 35 member C1).

NR:

description
PREDICTED: GDP-fucose transporter 1

GO: NA

KEGG:

id description
K15279 SLC35C1, FUCT1; solute carrier family 35 (GDP-fucose transporter), member C1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007236234.3 True 4196 mRNA 0.43 2 1866416 1871930
XM_007236235.3 False 3296 mRNA 0.42 3 1865392 1871930

Neighbor

gene id symbol gene type direction distance location
LOC103030943 NA coding upstream 29008 1809602 ~ 1836384 (+)
rplp2 rplp2,rplp2l,LOC107662341,LOC107591317,LOC100691806,LOC102784189,LOC101463883 coding upstream 159394 1700837 ~ 1705998 (+)
sdhaf2 sdhaf2,LOC107685224 coding upstream 420169 1440755 ~ 1445223 (+)
LOC103026058 NA coding upstream 559151 1292789 ~ 1306241 (+)
ap2a2 ap2a2,LOC106562310,LOC106587467 coding upstream 670646 1159772 ~ 1194746 (+)
mapk8ip1 mapk8ip1 coding downstream 10873 1882803 ~ 1948422 (+)
LOC111192498 lrp4 coding downstream 246713 2118643 ~ 2235758 (+)
LOC103031990 NA coding downstream 510123 2382053 ~ 2388088 (+)
LOC103032316 LOC108412978 coding downstream 520185 2392115 ~ 2406388 (+)
kiaa1024 kiaa1024,si:cabz01029535.1,LOC107662343,LOC107742309,LOC107692337,LOC107719677 coding downstream 929088 2801018 ~ 2861383 (+)
G39825 tollip,LOC107675413,LOC107550182 non-coding upstream 23743 1839503 ~ 1841649 (+)
LOC111192496 NA non-coding upstream 58451 1803667 ~ 1806941 (+)
LOC111192493 NA non-coding upstream 137737 1727164 ~ 1727655 (+)
G39816 NA non-coding upstream 143462 1719869 ~ 1721930 (+)
G39718 NA non-coding upstream 180927 1596420 ~ 1684465 (+)
G39826 NA non-coding downstream 39036 1910966 ~ 1952906 (+)
G39846 NA non-coding downstream 57020 1928950 ~ 1970208 (+)
G39847 NA non-coding downstream 59263 1931193 ~ 1932060 (+)
G39848 NA non-coding downstream 60216 1932146 ~ 1932812 (+)
G39914 NA non-coding downstream 150253 2022183 ~ 2022598 (+)
muc2 LOC108439647 other upstream 70460 1761227 ~ 1794932 (+)
polr2l NA other upstream 438275 1420391 ~ 1427117 (+)
LOC111192494 NA other upstream 451593 1410430 ~ 1413799 (+)
LOC111192492 NA other upstream 597007 1265857 ~ 1268385 (+)
G39626 NA other upstream 644906 1219806 ~ 1220486 (+)
LOC103029230 adamts17,LOC107662259,LOC107553817,LOC107742308,LOC107719674,LOC107563246 other downstream 725762 2597692 ~ 2811496 (+)
LOC103025846 abhd17c,LOC107591289,LOC107737205,LOC107662262,LOC107691706 other downstream 1510712 3382642 ~ 3401938 (+)
tlnrd1 mesdc1,LOC107591291,LOC107691577,LOC107709503,LOC107553753,LOC107662264 other downstream 1789745 3661675 ~ 3683184 (+)
LOC103044341 nlgn1,LOC107564928 other downstream 1965577 3837507 ~ 3856474 (+)
G40318 NA other downstream 2262580 4134510 ~ 4135585 (+)

Expression


Co-expression Network