psmd14 (psmd14,psde,LOC107563735)


Basic Information

Item Value
gene id psmd14
gene name psmd14,psde,LOC107563735
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 10281508 ~ 10289616 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007237334.3
ATTCGGTTGCTTTCACCCACTTCACTGCGGTGATTCGGGCTGATTCATTGTAGCCCCGCTGGAGCTTCAGCTCAGATTCAGAGGACTGTGCTCAGGTTTAACAGagagacaaaatgGACCGGCTGCTCAGGCTTGGTGGTGGGATGCCCGGACTCGGACAGGGTCCCCCCACAGATGCCCCCGCTGTGGACACGGCCGAACAGGTGTACATCTCCTCTCTGGCCCTGCTGAAGATGTTGAAGCACGGGCGAGCTGGTGTGCCCATGGAGGTTATGGGGCTGATGTTGGGCGAGTTTGTGGACGACTACACTGTGCGGGTTATTGATGTATTTGCCATGCCACAGTCAGGCACAGGTGTGAGTGTGGAGGCTGTGGATCCTGTTTTTCAAGCCAAAATGTTGGACATGTTAAAGCAGACTGGAAGGCCTGAGATGGTTGTAGGCTGGTACCACAGTCATCCAGGTTTTGGCTGCTGGTTGTCTGGTGTGGATATTAACACACAGCAGAGCTTTGAGGCGCTGTCCGAAAGAGCCGTCGCAGTGGTGGTCGACCCCATTCAGAGCGTCAAGGGAAAGgtTGTGATCGATGCTTTCAGACTCATTAATACTAATATGATGGTATTGGGACACGAGCCAAGGCAGACCACCTCTAACCTGGGGCACCTCAACAAACCTTCAATTCAGGCCCTGATTCACGGACTAAACAGACATTACTACTCCATCACCATCAACTACAGGAAGAACGAACTTGAACAGAAGATGCTGTTGAACCTCCATAAGAAGAGCTGGATGGAGGGTCTGACTCTGCAGGACTACAGCGAACACTGTAAGCTTAATGAGACCATCGTAAAGGAGATGCTGGAGCTGGCCAAGAATTACAACAAGGctgtagaagaagaagacaagATGACCCCAGAACAGCTGGCCATTAAGAATGTTGGAAAGCAGGATCCAAAAAGGCATTTGGAAGAGCATGTTGATGTCTTGATGACGTCTAATATTGTACAGTGCCTCGCCGCCATGTTAGATACCGTCGTCTTCCAGTAATATTGTTCGCTGTGCTTCATTGTTCATAATTAATCtctgttttgtctttttaagaaataaacctataaaaaaacCAAA

Function

symbol description
psmd14 Predicted to enable metallopeptidase activity; proteasome binding activity; and thiol-dependent deubiquitinase. Acts upstream of or within response to yeast. Predicted to be part of proteasome regulatory particle, lid subcomplex. Orthologous to human PSMD14 (proteasome 26S subunit, non-ATPase 14).

NR:

description
PREDICTED: 26S proteasome non-ATPase regulatory subunit 14

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0001878 response to yeast biological_process
GO:0000502 proteasome complex cellular_component
GO:0003984 acetolactate synthase activity molecular_function

KEGG:

id description
K03030 PSMD14, RPN11, POH1; 26S proteasome regulatory subunit N11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007237334.3 True 1124 mRNA 0.49 11 10281508 10289616

Neighbor

gene id symbol gene type direction distance location
lgsn NA coding upstream 246265 10029657 ~ 10035243 (+)
mrpl4 mrpl4,LOC107680457,LOC107597183,LOC107680460,LOC107753863 coding upstream 301924 9973553 ~ 9979584 (+)
c5h6orf120 cunh6orf120,c10h6orf120,cf120,LOC103038725,LOC105905813 coding upstream 310760 9968411 ~ 9970748 (+)
LOC103039038 NA coding upstream 313348 9959457 ~ 9968160 (+)
LOC103039853 fth1,LOC103039853,LOC100692258,LOC103365615,LOC101464185,LOC102297335 coding upstream 328227 9946192 ~ 9953281 (+)
trnar-ucg_1 NA coding downstream 2721 10292337 ~ 10292409 (+)
LOC103033216 LOC108428499 coding downstream 429124 10718740 ~ 10730389 (+)
LOC103033538 rlbp1,rlbp1a,LOC107737004,LOC107685234,LOC107600717,LOC107594728 coding downstream 443678 10733294 ~ 10743346 (+)
trnam-cau_21 NA coding downstream 465593 10755209 ~ 10755281 (+)
LOC103034920 NA coding downstream 466753 10756369 ~ 10861101 (+)
G41511 LOC108438683,LOC108270806 non-coding upstream 49560 10228851 ~ 10231948 (+)
G41507 NA non-coding upstream 54545 10218352 ~ 10226963 (+)
G41477 NA non-coding upstream 150763 10128552 ~ 10130745 (+)
G41465 NA non-coding upstream 193424 10083990 ~ 10088084 (+)
G41436 NA non-coding upstream 288286 9989714 ~ 9993222 (+)
LOC107197699 NA non-coding downstream 14122 10303738 ~ 10329108 (+)
G41597 NA non-coding downstream 173274 10462890 ~ 10491901 (+)
G41604 LOC108270701,LOC108428498,LOC107737005,LOC107685214 non-coding downstream 246149 10535765 ~ 10585949 (+)
G41682 NA non-coding downstream 575097 10864713 ~ 10864960 (+)
G41684 NA non-coding downstream 577368 10866984 ~ 10867501 (+)
LOC103037553 LOC107753862,LOC107597184 other upstream 258544 9995709 ~ 10022964 (+)
LOC103022991 NA other upstream 1346022 8921928 ~ 8935486 (+)
LOC103027717 LOC108428455 other upstream 1518716 8718560 ~ 8762792 (+)
LOC103028988 tdo2b,tdo2,LOC108428450,LOC107551803,LOC107718213,LOC107685956,LOC107715811 other upstream 1757195 8512104 ~ 8524313 (+)
LOC107197696 NA other upstream 2454594 7826523 ~ 7826914 (+)
G41828 LOC108429549,LOC108271147 other downstream 1281610 11571226 ~ 11580329 (+)
tmem161a tmem161a,LOC107728546,LOC107687722,LOC107554814,LOC107599454,LOC107719614 other downstream 1379831 11669447 ~ 11709683 (+)
tmem221 tmem221 other downstream 1464271 11753887 ~ 11758708 (+)
LOC103047294 gpx4,gpx4a,LOC108429535 other downstream 2044728 12334344 ~ 12340913 (+)
G42068 NA other downstream 2343200 12632816 ~ 12633429 (+)

Expression


Co-expression Network