mrpl4 (mrpl4,LOC107680457,LOC107597183,LOC107680460,LOC107753863)


Basic Information

Item Value
gene id mrpl4
gene name mrpl4,LOC107680457,LOC107597183,LOC107680460,LOC107753863
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 9973553 ~ 9979584 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007237346.3
CACTCGGCCTCACGTCAGATGTAGGGGACGGCGTGTTTCCTGCGCGCGACCTCTCCGCTGTGATTGGCAGGTCGCTGCAGCTCGTGCGGCTCATTAATCACTGGATCAGAGATTAGTATAGATATtagtattgttattatataGTAGCGATGTTCCGGGCCGCGCTGAGCGCGAGCAGAGGTGGGATCTGTAACCGGcttctctcatctctctctggAGAAAGCAATGTGCCATCCAATCTAAGAATCCCACCCAATCTGATCGGAGTTCCGAGAGAAAaaaaagTCCTTCCATCTGCTTCTGACCTGCCTGTCCTGCGAAGGTGTGAGGAGAACATTCCAGCTCACCTCTCACCTGTTCAAACCTGGCTACATTCTTTAGAGAGTCAAGACAGTGAACCGCTCGGTATTGTTGACCTACACCCTGACGTTTTCGCTGTACCTGTCAGGTTGGATATACTTCATGCTGTGGAGGTCTGGCAAAGAAATTTCAAGAGAATTAGCTATGCCAAAGTTAAGAGCAGAGCTGAAGTTAGTGGTGGAGGCAAAAAGCCCTGGAGACAGAAGGGCAGTGGACGAGCTCGCCACGGCAGCATCCGGTCACCCATCTGGAGAGGAGGCGGCGTCGCTCACGGTCCGAGAGGTCCAACTAGCTATTATTACATGCTGCCAATGAAGGTGCGAGTACAAGGCCTGAAAGTCGCACTGACCTCCAAACTGACTCAGGATTGTCTCCATATTGTTGACTCGTTGGAGATTCCTACTCCAGACCCACATTATCTACAGGACCTGGTCAAACACAGACAGTGGGGGAATTCAGTCCTCATTGTTGATGTAGGGGAGGAGTTTCCTCAGAACGTTCTTCAGGCCACAGAAACCCTGAAGACTATCAGTATCATTCCAGCAATCGGTCTGAATGTTCACAGCATGCTGAAATATGAAACTCTGGTTCTTACTCTGGACACAGTTAAGTTTCTGGAGAAGAAGCTGCTGTGGCATGACTCTCGATTTACAGCTCTGTACCCATTCAAACTCCCCTACAGTGACTGGCTGTGAACTCTCAGTgcattaaaaagacatttatttcCAATGCA
>XM_022669577.1
CAGTTAAACTGGACTCAGAGACTGGAGTCTGATATTTAGGCTGGACTGAGGCCGGACTCTGGAATAAGATTTAGGATGGAATGGCGCTGGATTTTGGAATAAGATTTAGGCAGcttctctcatctctctctggAGAAAGCAATGTGCCATCCAATCTAAGAATCCCACCCAATCTGATCGGAGTTCCGAGAGAAAaaaaagTCCTTCCATCTGCTTCTGACCTGCCTGTCCTGCGAAGGTGTGAGGAGAACATTCCAGCTCACCTCTCACCTGTTCAAACCTGGCTACATTCTTTAGAGAGTCAAGACAGTGAACCGCTCGGTATTGTTGACCTACACCCTGACGTTTTCGCTGTACCTGTCAGGTTGGATATACTTCATGCTGTGGAGGTCTGGCAAAGAAATTTCAAGAGAATTAGCTATGCCAAAGTTAAGAGCAGAGCTGAAGTTAGTGGTGGAGGCAAAAAGCCCTGGAGACAGAAGGGCAGTGGACGAGCTCGCCACGGCAGCATCCGGTCACCCATCTGGAGAGGAGGCGGCGTCGCTCACGGTCCGAGAGGTCCAACTAGCTATTATTACATGCTGCCAATGAAGGTGCGAGTACAAGGCCTGAAAGTCGCACTGACCTCCAAACTGACTCAGGATTGTCTCCATATTGTTGACTCGTTGGAGATTCCTACTCCAGACCCACATTATCTACAGGACCTGGTCAAACACAGACAGTGGGGGAATTCAGTCCTCATTGTTGATGTAGGGGAGGAGTTTCCTCAGAACGTTCTTCAGGCCACAGAAACCCTGAAGACTATCAGTATCATTCCAGCAATCGGTCTGAATGTTCACAGCATGCTGAAATATGAAACTCTGGTTCTTACTCTGGACACAGTTAAGTTTCTGGAGAAGAAGCTGCTGTGGCATGACTCTCGATTTACAGCTCTGTACCCATTCAAACTCCCCTACAGTGACTGGCTGTGAACTCTCAGTgcattaaaaagacatttatttcCAA

Function

symbol description
mrpl4 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in mitochondrion and ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human MRPL4 (mitochondrial ribosomal protein L4).

NR:

description
39S ribosomal protein L4, mitochondrial-like

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0005739 mitochondrion cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02926 RP-L4, MRPL4, rplD; large subunit ribosomal protein L4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007237346.3 True 1093 mRNA 0.49 9 9973553 9979584
XM_022669577.1 False 1005 mRNA 0.48 9 9973814 9979580

Neighbor

gene id symbol gene type direction distance location
c5h6orf120 cunh6orf120,c10h6orf120,cf120,LOC103038725,LOC105905813 coding upstream 2805 9968411 ~ 9970748 (+)
LOC103039038 NA coding upstream 5393 9959457 ~ 9968160 (+)
LOC103039853 fth1,LOC103039853,LOC100692258,LOC103365615,LOC101464185,LOC102297335 coding upstream 20272 9946192 ~ 9953281 (+)
LOC111192504 nlgn1,LOC107593140,LOC107563764,LOC107674505,LOC106584306,LOC107718905 coding upstream 260045 9426169 ~ 9713508 (+)
ect2 ect2,LOC107674529,LOC107718889 coding upstream 717656 9194185 ~ 9255897 (+)
lgsn NA coding downstream 50073 10029657 ~ 10035243 (+)
psmd14 psmd14,psde,LOC107563735 coding downstream 301924 10281508 ~ 10289616 (+)
trnar-ucg_1 NA coding downstream 312753 10292337 ~ 10292409 (+)
LOC103033216 LOC108428499 coding downstream 739156 10718740 ~ 10730389 (+)
LOC103033538 rlbp1,rlbp1a,LOC107737004,LOC107685234,LOC107600717,LOC107594728 coding downstream 753710 10733294 ~ 10743346 (+)
G41410 NA non-coding upstream 92263 9881055 ~ 9881290 (+)
G41401 NA non-coding upstream 98276 9875060 ~ 9875277 (+)
G41334 NA non-coding upstream 201782 9771540 ~ 9771771 (+)
G41328 NA non-coding upstream 210686 9762466 ~ 9762867 (+)
G41310 NA non-coding upstream 236723 9736303 ~ 9736830 (+)
G41436 NA non-coding downstream 10130 9989714 ~ 9993222 (+)
G41465 NA non-coding downstream 104406 10083990 ~ 10088084 (+)
G41477 NA non-coding downstream 148968 10128552 ~ 10130745 (+)
G41507 NA non-coding downstream 238768 10218352 ~ 10226963 (+)
G41511 LOC108438683,LOC108270806 non-coding downstream 249267 10228851 ~ 10231948 (+)
LOC103022991 NA other upstream 1038067 8921928 ~ 8935486 (+)
LOC103027717 LOC108428455 other upstream 1210761 8718560 ~ 8762792 (+)
LOC103028988 tdo2b,tdo2,LOC108428450,LOC107551803,LOC107718213,LOC107685956,LOC107715811 other upstream 1449240 8512104 ~ 8524313 (+)
LOC107197696 NA other upstream 2146639 7826523 ~ 7826914 (+)
G40756 NA other upstream 3439879 6533365 ~ 6533674 (+)
LOC103037553 LOC107753862,LOC107597184 other downstream 16125 9995709 ~ 10022964 (+)
G41828 LOC108429549,LOC108271147 other downstream 1591642 11571226 ~ 11580329 (+)
tmem161a tmem161a,LOC107728546,LOC107687722,LOC107554814,LOC107599454,LOC107719614 other downstream 1689863 11669447 ~ 11709683 (+)
tmem221 tmem221 other downstream 1774303 11753887 ~ 11758708 (+)
LOC103047294 gpx4,gpx4a,LOC108429535 other downstream 2354760 12334344 ~ 12340913 (+)

Expression


Co-expression Network