LOC103031990


Basic Information

Item Value
gene id LOC103031990
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 2382053 ~ 2388088 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007238866.3
CGGTCTCCGCTATGGAGTCTCTGTGGCGGGTCCGGAATGGCGGGTTTTTCGTGAGGCGCCGCTTCAGTTTAGACTTTCTTCCACTTTAAACAGATTTAGGGATTAAACTCAGATTTTCGGCGCGCTAACAGGGATGGACCTGCGGGACCCGAGGAAACAGCCGGAGCGCCGCCGCTTCCAGAGAAAGTTAAGGTCTTAATTCTGAGAAAGTTAACATCCACCAACCTGTGTTCTCCTGTATCATGAGGAGGTCTGGGGCTTCAGTCCCACCTCGTCTCCGACGACAAAAACCTGATCAAAGCGACGTCAAAACTTCTCCCGAAAAAGATGTGAGAACTAAAACTAGCAGACGGATGAGGAAAGTGAAGGCGGGTCCACTGAGAAATAAATTCAATCCGGACTCGTTCTGCTCGGACAGTGAGGGTTCTGGAGTGAGTGATGGCGTGGACCGGGCCGTGACCTCGCCCGTACCTGTGCTTGTTGATCTCACTGGTGAACCTGAACGTCTGGTTGAGGTTGGTGGAGCTCAGAATCAGCAGGATGTTGTTCTGCTCTCGTCTGGTGAGGAGGGTCAGATCAGACGGTTGGAGTTGGTGAAGTTTGGGCGGAGCTCGGAGGATCCGGTGGGTAAAGTTGTCTTGCCGCCGCAGTCTCTGGCAGAAGACACACTGAAAACAATCCGACTGAAAAACGAAGCTTCAGGACGAAACCCGCTCTCTGATAGTATCGGTACGATTCTGATTGAGAGGTGGGACAGTCAGTCGGACGAGGCGAGCGCTGAGGGATCGGTGGTGTCAGGTCCCGGCTCCCCTCACAGTGTCCTAAGCTCACTGAGGTGCAGAGACTGCAGGACACTCTTCACCAAAATCAGGAGACAAAGACCTCCGAAAACTAGGAAACGGGACTATGATCCAGCCTCTTTATCATGTGATGAATGGCTGCTTATTAAGACTTGGCATCCAAAGCGACGGAGGCaagagagaggaaagttgtgGACGCATCTGAAGCGGATCAGAAAGCTGGTGCTGGAGCTTTCGGGTTGTGCCATGAAAAACACAGTCACCTGTTCTAGACCTCACGTCTTCCTGCAGAGGAATTTGCGTCGCTGCAGGAGAATGACCTCTGACAGCAAAGCCAAGCCACGACAGCGCCGCCGACCCAGGAAGAAAATCCTGTGGCCTCCTCTGGGTTCCAGAAGAAGAGTAAAGAGAAAAACGTTTGAAAGAGATGATTCCTTAGATCAGCTTTTCCCTTTAGACCTCACCGCCTCCAACAACGCCCGCCAGGACCAGCCTGCGAGCCGCGATGATCGCTCTGAACCACAAGAGCAGGAGAGAGTTCTTAAACACGTCGTCCGGGACTTTACCGGCGTTCCGGACCTACCGGAGGGAACACGCAGGGAACTGAGATTTGAGGATCTGCTCAGTGCCCTGCCTATAGAGTCACAGAAACCACAGCAGGGGATcctacagagaaacagaggaagaagaaaaaccAATACAAGTCAAACAGATCTCCCAGCAAATGAACTGGATTATTCCAGAGCCAAAAATCTGCTGTGTGGGGATTCAGACGAGTTCAGAACCCCTACAGATCTCTCCACTTTGGATTCGAAGGTTGTCAGAAAGAGTCACTCATCATCGTTCTTTTCGTCTGGAAACTCGTTCAGTGCGGAACAGCGGGGCAGCTTCAGGTCCATGTTAGCGGCGGTGGAGAAGAGTCACAACCGGATTATTAAAGAATCTCACAGTTGAGGCTCTCGCCCGGTTCTGGTTTTGGTTCTGTTTGTTTAAGGTTGTTGAGTTTCTCTGTTCTGTTTTAGGCTGGAGAAATATAGGCTGTTACCTACACGTTCACGTTTAAACGATAGGGGGCAGTGCAGCTCTCAGCAGCATCAAATACACATCAATCAAATACACAGGACGTTTAATGGAAGATTAAAAGCTGTAAGAACGGTATTGCCGCGCTGGTAAAGGGGCCGCATCTGTTATGTTTATGATGCAGCCGGTTGACTGCATTTATACGCAGCCAAACATCAAGTTTTTCTCCAGCTTTAGAGCTTAATAGTTAGAAACTGGCATCTAATTGGTGCACTCTCttagtgaaacatttaaaagccTGAAAAAAGATCTTCTGATCAAACAGTTTGCTGTTTGTTGTGATTTTGAATACCTACCTGTTCAGGTGATTAGACCTGGATAGTTGACAAATCGTTTTTCATATTTCCGGTCCTTTATTGTTATTgtatagtgttttatttttgtttttttgttagttaAATTATTAGCATAgacttaataacttaaaaagagGCCAAGAAGTAACCacactgctgtttttttgttctgttgctGAAACGTTCTCTCTTACTCAGGAGTAAATTTTCagagtaaataaatgtataaagtgTAATTAACATGTATGTAGTTCagttcctttttttctgtgttctgttttataattattaattataaatgtcTACAGTGGGATTGTTGCTGGTAACAAATAAACACGGCTTCTGTTGACTA
>XM_015602896.2
GCTATGGAGTCTCTGTGGCGGGTCCGGAATGGCGGGTTTTTCGTGAGGCGCCGCTTCAGTTTAGACTTTCTTCCACTTTAAACAGATTTAGGGATTAAACTCAGATTTTCGGCGCGCTAACAGGGATGGACCTGCGGGACCCGAGGAAACAGCCGGAGCGCCGCCGCTTCCAGAGAAAGTGAGATTTATTCgGTTAAGGTCTTAATTCTGAGAAAGTTAACATCCACCAACCTGTGTTCTCCTGTATCATGAGGAGGTCTGGGGCTTCAGTCCCACCTCGTCTCCGACGACAAAAACCTGATCAAAGCGACGTCAAAACTTCTCCCGAAAAAGATGTGAGAACTAAAACTAGCAGACGGATGAGGAAAGTGAAGGCGGGTCCACTGAGAAATAAATTCAATCCGGACTCGTTCTGCTCGGACAGTGAGGGTTCTGGAGTGAGTGATGGCGTGGACCGGGCCGTGACCTCGCCCGTACCTGTGCTTGTTGATCTCACTGGTGAACCTGAACGTCTGGTTGAGGTTGGTGGAGCTCAGAATCAGCAGGATGTTGTTCTGCTCTCGTCTGGTGAGGAGGGTCAGATCAGACGGTTGGAGTTGGTGAAGTTTGGGCGGAGCTCGGAGGATCCGGTGGGTAAAGTTGTCTTGCCGCCGCAGTCTCTGGCAGAAGACACACTGAAAACAATCCGACTGAAAAACGAAGCTTCAGGACGAAACCCGCTCTCTGATAGTATCGGTACGATTCTGATTGAGAGGTGGGACAGTCAGTCGGACGAGGCGAGCGCTGAGGGATCGGTGGTGTCAGGTCCCGGCTCCCCTCACAGTGTCCTAAGCTCACTGAGGTGCAGAGACTGCAGGACACTCTTCACCAAAATCAGGAGACAAAGACCTCCGAAAACTAGGAAACGGGACTATGATCCAGCCTCTTTATCATGTGATGAATGGCTGCTTATTAAGACTTGGCATCCAAAGCGACGGAGGCaagagagaggaaagttgtgGACGCATCTGAAGCGGATCAGAAAGCTGGTGCTGGAGCTTTCGGGTTGTGCCATGAAAAACACAGTCACCTGTTCTAGACCTCACGTCTTCCTGCAGAGGAATTTGCGTCGCTGCAGGAGAATGACCTCTGACAGCAAAGCCAAGCCACGACAGCGCCGCCGACCCAGGAAGAAAATCCTGTGGCCTCCTCTGGGTTCCAGAAGAAGAGTAAAGAGAAAAACGTTTGAAAGAGATGATTCCTTAGATCAGCTTTTCCCTTTAGACCTCACCGCCTCCAACAACGCCCGCCAGGACCAGCCTGCGAGCCGCGATGATCGCTCTGAACCACAAGAGCAGGAGAGAGTTCTTAAACACGTCGTCCGGGACTTTACCGGCGTTCCGGACCTACCGGAGGGAACACGCAGGGAACTGAGATTTGAGGATCTGCTCAGTGCCCTGCCTATAGAGTCACAGAAACCACAGCAGGGGATcctacagagaaacagaggaagaagaaaaaccAATACAAGTCAAACAGATCTCCCAGCAAATGAACTGGATTATTCCAGAGCCAAAAATCTGCTGTGTGGGGATTCAGACGAGTTCAGAACCCCTACAGATCTCTCCACTTTGGATTCGAAGGTTGTCAGAAAGAGTCACTCATCATCGTTCTTTTCGTCTGGAAACTCGTTCAGTGCGGAACAGCGGGGCAGCTTCAGGTCCATGTTAGCGGCGGTGGAGAAGAGTCACAACCGGATTATTAAAGAATCTCACAGTTGAGGCTCTCGCCCGGTTCTGGTTTTGGTTCTGTTTGTTTAAGGTTGTTGAGTTTCTCTGTTCTGTTTTAGGCTGGAGAAATATAGGCTGTTACCTACACGTTCACGTTTAAACGATAGGGGGCAGTGCAGCTCTCAGCAGCATCAAATACACATCAATCAAATACACAGGACGTTTAATGGAAGATTAAAAGCTGTAAGAACGGTATTGCCGCGCTGGTAAAGGGGCCGCATCTGTTATGTTTATGATGCAGCCGGTTGACTGCATTTATACGCAGCCAAACATCAAGTTTTTCTCCAGCTTTAGAGCTTAATAGTTAGAAACTGGCATCTAATTGGTGCACTCTCttagtgaaacatttaaaagccTGAAAAAAGATCTTCTGATCAAACAGTTTGCTGTTTGTTGTGATTTTGAATACCTACCTGTTCAGGTGATTAGACCTGGATAGTTGACAAATCGTTTTTCATATTTCCGGTCCTTTATTGTTATTgtatagtgttttatttttgtttttttgttagttaAATTATTAGCATAgacttaataacttaaaaagagGCCAAGAAGTAACCacactgctgtttttttgttctgttgctGAAACGTTCTCTCTTACTCAGGAGTAAATTTTCagagtaaataaatgtataaagtgTAATTAACATGTATGTAGTTCagttcctttttttctgtgttctgttttataattattaattataaatgtcTACAGTGGGATTGTTGCTGGTAACAAATAAACACGGCTTCTGTTGACTA

Function

GO:

id name namespace
GO:0006950 response to stress biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0033554 cellular response to stress biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0006281 DNA repair biological_process

KEGG:

id description
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007238866.3 False 2528 mRNA 0.47 5 2382053 2388088
XM_015602896.2 True 2534 mRNA 0.47 5 2382061 2388088

Neighbor

gene id symbol gene type direction distance location
LOC111192498 lrp4 coding upstream 146295 2118643 ~ 2235758 (+)
mapk8ip1 mapk8ip1 coding upstream 433631 1882803 ~ 1948422 (+)
slc35c1 slc35c1 coding upstream 510123 1865392 ~ 1871930 (+)
LOC103030943 NA coding upstream 545669 1809602 ~ 1836384 (+)
rplp2 rplp2,rplp2l,LOC107662341,LOC107591317,LOC100691806,LOC102784189,LOC101463883 coding upstream 676055 1700837 ~ 1705998 (+)
LOC103032316 LOC108412978 coding downstream 4027 2392115 ~ 2406388 (+)
kiaa1024 kiaa1024,si:cabz01029535.1,LOC107662343,LOC107742309,LOC107692337,LOC107719677 coding downstream 412930 2801018 ~ 2861383 (+)
zfand6 NA coding downstream 598277 2986365 ~ 3006325 (+)
fah fah,LOC107662319,LOC107691923,LOC107742310 coding downstream 620246 3008334 ~ 3042100 (+)
arnt2 arnt2 coding downstream 734504 3122592 ~ 3277613 (+)
G39942 NA non-coding upstream 4231 2377506 ~ 2377822 (+)
G39930 NA non-coding upstream 165390 2215968 ~ 2216663 (+)
G39929 NA non-coding upstream 177095 2204523 ~ 2204958 (+)
G39928 NA non-coding upstream 250118 2130974 ~ 2131935 (+)
G39927 NA non-coding upstream 250535 2128910 ~ 2131518 (+)
G39945 NA non-coding downstream 950 2389038 ~ 2390639 (+)
G39946 NA non-coding downstream 1828 2389916 ~ 2391562 (+)
G39952 spoplb,LOC108412981,LOC103032629,LOC108270802,LOC107715774,LOC107718234,LOC107573035,LOC107551807 non-coding downstream 26684 2414772 ~ 2419056 (+)
G39943 NA non-coding downstream 31062 2419150 ~ 2425105 (+)
G39965 NA non-coding downstream 110781 2498869 ~ 2499291 (+)
muc2 LOC108439647 other upstream 587121 1761227 ~ 1794932 (+)
polr2l NA other upstream 954936 1420391 ~ 1427117 (+)
LOC111192494 NA other upstream 968254 1410430 ~ 1413799 (+)
LOC111192492 NA other upstream 1113668 1265857 ~ 1268385 (+)
G39626 NA other upstream 1161567 1219806 ~ 1220486 (+)
LOC103029230 adamts17,LOC107662259,LOC107553817,LOC107742308,LOC107719674,LOC107563246 other downstream 209604 2597692 ~ 2811496 (+)
LOC103025846 abhd17c,LOC107591289,LOC107737205,LOC107662262,LOC107691706 other downstream 994554 3382642 ~ 3401938 (+)
tlnrd1 mesdc1,LOC107591291,LOC107691577,LOC107709503,LOC107553753,LOC107662264 other downstream 1273587 3661675 ~ 3683184 (+)
LOC103044341 nlgn1,LOC107564928 other downstream 1449419 3837507 ~ 3856474 (+)
G40318 NA other downstream 1746422 4134510 ~ 4135585 (+)

Expression


Co-expression Network