LOC103032316 (LOC108412978)


Basic Information

Item Value
gene id LOC103032316
gene name LOC108412978
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 2392115 ~ 2406388 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007238867.3
GCACCGCGGCGCTGCAGAACCGGGACTCGAGCGCGCGGGAGGCGCGTCAACTTCAATACAGCGCGATTATAAATATCtgcatttacagttttatttatattttgtatttatatttatatttgtatatatttatatatataggtatatgtatATAAGAGTAGGAGGCGCGCGCTGCCGGACGCGGAGCGCGGTGGGAGCAGGTCTCGCCCCCGGCGGGTGGATGGAGTGCGTTTGAACGCGGCGTTTCTGACTCCGCGCGCTCGTACGGAGGAGCACCGTCTAGTGCAGGAGGACCGGGAGTGCCGGAGTTGCGCGCGAAGGAGGATGCGCCCGGGTTTGGCACGAGCATGCACGCGGGGACAACTCTGCAGCTGAACTTGGACTGACTGAGCGCAGACTGGGCGAGTCCAACTGAACAGAACCAGAGATGCCCAGACCTCTCtctgccctgctgctgctgctctgcctGCATGCGGTTACATGGGGCGTGGAGCCCGGCACGACAGCAGGTCCTCAGGGATGGCGAGAGAGCGATAAGGACGAGAGCTTCTCCACGCAGGATCTTCGCTCAGCCCTCCTCAAACCCCTGCGGCTCTTCGCCCGCCCCTCGCCACCCGTCACCGTCCGGAGGAACGAAGCCCCTCAGCCTGGAGCCGTTCAGGACCCGTGGACCTGGCTGTCCAACCGCACCGATAATGAAGAGACTCTGGCCAGAGCCAAACGCCGACCCATCGTAAAGACAGGAAAGTTCAAGAAGATGTTCGGCTGGGGCGATTTCCACTCCACCATCAAAACCATCAAGCTGAACCTGCTGATCACGGGGAAGATAGTGGACCACGGGAACGGGACCTTCAGCGTCTACTTCCGACACAACTCCACGGGCCTGGGGAACGTGTCCGTGAGCCTGGTGCCACCGTCCAAGGTGGTCGACTTCGAGATCATCCAGCAGGAGACTGTGGACATTTCCAAGGACGGTAAAGCCTTTAACTGCAGGGTGGAGTACGAGAAGACGGACCGCAGCAAGAGGACGTCCCTGTGCAGCCACGACTCGGCCCGGGTCTGCTTCCAGGAGCAGACTCAGAGCCATGTCTCCTGGCTCTGCTCCAAGCCATTTAAAGTCATCTGCATCTACATAGACTTCTTCAGCGCCGACTACAAGCTGGTCCAGAAGGTCTGTCCGGACTACAACTACCACAGCGACACGCCCTACACCTCCATGGGATAGTGGTCTGCTGAGGAGCTGAGGTCCTCACTGACCACCTGCCCTCCTAACCTTTTACTACAAACAGAACGTAAACTAGCAAACTCTGAAAAGAGTCCTGAATaaatgctgctgatgcagcggGACAACGGACAGGACGATGGACGGGACGACGGACGGGGCGGCGGACGGCGCGATGGACAGGGCCAGTGCTCAGGCCCTGCTGAAGACTCGGGAATACGTTCTTGTACAGAAATTGTAAAAGCCCATCATTGTCGTTGTTCCACTCGTGATGTTTGTAGTTCTGCATGTTCTAACAGTTCTAAAAACGTTATCATAACATTTGTAAATCCGTAAATCTGCAAAcagtagggatgcactgataTGGGAACTGTGGACTGATGCTGGCTCAATATcaacaatattttgtgtggaaaTGATCTGatctgtaaacatatttaaaatattgacacttGGACTAAATCTACTTGAATGATATCAACACAGAACTACAGTACACTGATCAGCCAAAATATTAAAACCACCTTAAAACTGTTAGGCAGCGAGGAAACAGTCTTAGAGTGCTTAGAGTACTCTGATCAGGCCAAACTCAAATCGCTACACAACTGTGACAGAACGTAGAACTGAATTAAATTGAGTTGAAGTGAGTTGTTCCTCGTATTCCGTGGTCACGGTCGAGTCACATTTGGATGTGCGCAGTGGAGAttccacctcacaacttaaGATCTCAACACACTTCTTTTTGGGACGATGTTTGATTAACTTCGGTGAATAATATGACGTAATTGTGGGAAAAAGTGAACAGTGCAGACGTTTCTCAGGAGCTTTACTCACCTTGTTTCGCACGTGGAAGCTGAGGGATCTCCGTGGACGAAGGCACTTCACAACAACACCTGTGATTGGCTGGAAATGCATGTCTGGCATTGTGCAACGCTcgtttaattatttaaagcatCTGCTGTAACTTTACTATTGGTGCACCTCCAGAGGTCTTGTAGGGTTCTGGTCTCGACGGGTCGGAGCACCTACTCGGGATTAGGCaggtgttttaatgttatggctgattaggAAGCTGCAATAAATGTCTGTAAAGTTACCCTGTGTTCAGAGTGGTGATGAGGTAACAGTTCGCTGGTCACCCCGAGTTTATCTCCTGTGGGTTTAAGTTCTCTCAGGCCCGTGCATGAGAACGACGTGTATCGGCGTGGGCCGTTAGCACGCTGGCTAATCTAGTGAGCTATCTATTGAGAAACCAACCCGCCAGAGAGGCTACCCAAAACCCACTACTGTCTTTCCtgctacattttttttgtgtgaattgTTCCTGTTTATgtgtaaaaagataaaaaatcctCTCTTCCACTGCTGAGAACAGGAACCAGAATCTGGATACCTCAGAACTCAAcgtctgtgattggtccaaagaattTGCTCAGCCATCTAATCTGTTTGCTTTGGGCCAGGTCAGCTGTCGATCTGTCTCctgccagtgtgaacacagggttAGAAATACCAATACGGAACTAaggctgtgtaaaaaaaataaaaaaataattcaatacaATTAGCCTATTTTGGACAAAAGCGATgccttaatattaaaatataaaaattactgTAACTGCTTTGGATTAATTCAGATTAATGTAAACACTAAGTGGTTAGTTATTGTATCTAAAATATCCCTAAACAAATCGATGCTGAAGAAAAGTGGAAACTGAATTCTGAATTGAATCATGTGTCCAAAACCATTTCTCACCAAAAGTATCCCAATATCTTTGTGCATCCCTGTTAAATTAAGGTGGAGTTTCATCAGTGACCTGTTCACACTGACCCCAGTgatgttgtaaatgtaaatgtaatgtttaaagtGAATCCAAACTTCACCATAACTGTATCAGAACTCTGTTCCTGACGGATGTTTAAAGACGGATTCCTTATCTGTTCTTGTCCTCCGAGAAGCTTCCTTTCATGCCTTGTTGATGTTTTCATGTTTATGAGATCTGTGAGTCAGTGATGAGTTTTAAAGTCGTAACGCGTCTCCCGGATTCACTCTGTACCACTGTTTTcatcattaaacaaaataactcacgataaaaaacactgaggaATAA

Function

NR:

description
PREDICTED: neurexophilin-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007238867.3 True 3336 mRNA 0.48 3 2392115 2406388

Neighbor

gene id symbol gene type direction distance location
LOC103031990 NA coding upstream 4027 2382053 ~ 2388088 (+)
LOC111192498 lrp4 coding upstream 156357 2118643 ~ 2235758 (+)
mapk8ip1 mapk8ip1 coding upstream 443693 1882803 ~ 1948422 (+)
slc35c1 slc35c1 coding upstream 520185 1865392 ~ 1871930 (+)
LOC103030943 NA coding upstream 555731 1809602 ~ 1836384 (+)
kiaa1024 kiaa1024,si:cabz01029535.1,LOC107662343,LOC107742309,LOC107692337,LOC107719677 coding downstream 394630 2801018 ~ 2861383 (+)
zfand6 NA coding downstream 579977 2986365 ~ 3006325 (+)
fah fah,LOC107662319,LOC107691923,LOC107742310 coding downstream 601946 3008334 ~ 3042100 (+)
arnt2 arnt2 coding downstream 716204 3122592 ~ 3277613 (+)
cemip cemip,LOC107591290,LOC107691638,LOC107662322,LOC107553744 coding downstream 1023094 3429482 ~ 3645688 (+)
G39946 NA non-coding upstream 553 2389916 ~ 2391562 (+)
G39945 NA non-coding upstream 1476 2389038 ~ 2390639 (+)
G39942 NA non-coding upstream 14293 2377506 ~ 2377822 (+)
G39930 NA non-coding upstream 175452 2215968 ~ 2216663 (+)
G39929 NA non-coding upstream 187157 2204523 ~ 2204958 (+)
G39952 spoplb,LOC108412981,LOC103032629,LOC108270802,LOC107715774,LOC107718234,LOC107573035,LOC107551807 non-coding downstream 8384 2414772 ~ 2419056 (+)
G39943 NA non-coding downstream 12762 2419150 ~ 2425105 (+)
G39965 NA non-coding downstream 92481 2498869 ~ 2499291 (+)
LOC111192560 NA non-coding downstream 386146 2792534 ~ 2793815 (+)
G40014 NA non-coding downstream 400762 2807150 ~ 2810533 (+)
muc2 LOC108439647 other upstream 597183 1761227 ~ 1794932 (+)
polr2l NA other upstream 964998 1420391 ~ 1427117 (+)
LOC111192494 NA other upstream 978316 1410430 ~ 1413799 (+)
LOC111192492 NA other upstream 1123730 1265857 ~ 1268385 (+)
G39626 NA other upstream 1171629 1219806 ~ 1220486 (+)
LOC103029230 adamts17,LOC107662259,LOC107553817,LOC107742308,LOC107719674,LOC107563246 other downstream 191304 2597692 ~ 2811496 (+)
LOC103025846 abhd17c,LOC107591289,LOC107737205,LOC107662262,LOC107691706 other downstream 976254 3382642 ~ 3401938 (+)
tlnrd1 mesdc1,LOC107591291,LOC107691577,LOC107709503,LOC107553753,LOC107662264 other downstream 1255287 3661675 ~ 3683184 (+)
LOC103044341 nlgn1,LOC107564928 other downstream 1431119 3837507 ~ 3856474 (+)
G40318 NA other downstream 1728122 4134510 ~ 4135585 (+)

Expression


Co-expression Network