G47106


Basic Information

Item Value
gene id G47106
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 10403274 ~ 10481243 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU53564
ATGTTACAGGGATCTTACCACAATACTGACTTTCAGTGAAAGAAAACTAAATATGTACATATAAAAAAGAAAACTTCAATTGGAATGTCTTACCATCATAGCAGACAAATGTGTAAGAATTGTCACATGACAAATCATACCAGTTTCCATTATAATCCATGTAAACACACAGTTCATTCCCAAGATAATTGTTTGGTTCATGATAAAAGTTCCTGAAATCTCTTTCTTCTTCCTGATAGAAATCATTGTCCTCCAATGACCATCTCCAGCTGTTCACATCATCATACTGTCCAATCCAGGCTGAACCATTGTAACTCCCATTAACTGTGTTGATCAGACTGTTCATTTCCTCCATGTTATCAATGGTGGCCAGATCAGTGTAATTCTGTCTGCAGTATCTCTGAGCTTCAGTCCAGGTCTTTGACTCATTCACAAAATGATACTCCCAGGATAATGCACTGTAGCAAATGAAAGGTAAGGCAGTATTACAGTTTTCGTCTGTCCAGTTCCCAGAGTCACTAAATGACACTGCAGTGCAGTATTCTCTGTTTCCAGCATTATCTGGCTGTCCTGTCCTCCAGTTACTGAATGAAGAGTTGCTCTGATCTGACCAAGATCTGGTTCTGTACAGTCCAATCCAAACAACTGAATAATAATATTGTATTAATGACTGAACCCTGTAGTTTTCAATCTCATTCCTGATACTGATGAGGTCTGTGTGATGTTCTCTGCAGTAACTCTGAGCTTCAGTCCAGGTTTTGGACTGGTAAACCAACACATAACTTGTACTAGCATTCACTCTTCCATCATAGCAAACAAAGGGAAGTGTACTGGAGCAAGAGATTTCACTCCATGTTCCCCAATTATATGAACGCATGTACGCACACAGACTCTGTCCGCCTGAGTTTACTGGTGTCTGGATATACCAGCTTTTAAAACCTTTCTCTAAAGCTGCATCCTCCAGTGACCATCTCCAGCTGTTCAGATCATCATATAATCCAATCCAAGCTTTGCCATAGTAAGAGCCACGTGCTGTTTTAAAGAGCCTGTTCATTTCCTCCATGTTATCAATGGTGGCCAGATCAGTGTAATTCTGTCTGCAGTATCTCTGAGCTTCAGTCCAGGTCTTGGATTCATTCACAAAGTGATACTGACGGGTGCATGAAGATTGTGTGCAGGTTCTGCTGTAGCAGAAGAAAGGCATGCTGGATACACAGACCTCATCTGTCCATCGACCTGAATACTGGAATGATACTGCAGTGCAGTGCTGGTATCCATATTCATTAGCTTGATTATTTCCATTATCTGGTTGCGCCTGTGACCAAGGAATTTGCGGCCTCCAGTTTTGATAACTGGTAGTCTTATTGTTTGACCAAACCCTGTTTCTGTACAGTCCGATCCAGACTTGTCCACCTGATACCTGAAAGATCATCTGGTTCTCAGTCTGATTTCTCACATTGGCGAGATCTGTGTAATGCTGTCTGCAGTATCTACGAGCCTCTGACCAGGTTTTCCAGTTATAGACTCTGATGTAACTCTGTGTGGCATTTGCTCTACCATCATAGCAAACAAATGTGAGCATGTTGTCACATGACATATCATACCATTTTCCATCATAACTCATGTAAACACACAGCTGGTTCCCCCCATCATTGTTCGGTTCATGATACCAGTTCCTGAAATCTCTCTCACCATCCTGATAAAAAT
>TU53560
ATTAGGATCCATGTAAACACACAGTTCATTCCCAACATTATTGTTTGGTTCATGATACCAATTCCTGAAATCTCTCTCTCCTTCCTGATAGAAATCATTGTCTTCCAATGACCATCTCCAGCTGTTCACATCATCATACAGTCCAATCCAGGCTGAACCATTGTAACTCCCATTAACTGTGTTGATCAGACTGTTCATTTCCTCCATGTTATCAATGGTGGCCAGATCAGTGTAATTCTGTCTGCAGTATCTCTGAGCTTCAGTCCAGGTCTTTGACTCATTCACAAAATGATACTCCCAGGATAATGCTAA
>TU53558
TTCCCTTTCAAAGTTTCAAACTTTAACCAACTTTATTGACAACATGTAGTACTGTTATGCAAAACTTCAAATAAAACAAAATCATCATCTCACATTTATCAATCATATTCAGATCAAAATATCATGTCAAAAATTAGTGTAACAAGTATATTGTACTGTACTATACATTATAATTTTCCAAAATTCTGACACTGAAAATCAAGCTATATTCATTGTTAGTATTTTATAAACTCCTTCACTGATTTAATAGATCCATTAAACAACACATGCCAATGACAAAGTTTTGAGAAAAAAAAAAAAAAAAATCTGGATCATTGATTTGTAAAAGTCAAGAGATTATTGTATAATTTCATGCTTGATTAAGTATTGAGCCCACAACTGTATTTATTGGAAACTGCAAAGCGTTGTCCTCCTCCATCAGGGTTTGATCTTACGATAGTCTCTCAAATGCATGGTGGCGTTGCTGGGAAGTCCGAGTCTGATCAGCTTCTCTTGCAACTGAAAATATATGAGCTTTATGACAAACCTATCATGTGCTGATATGTTATTCAGTCATATCATTTAATTATCATTCATTTATATTTATTTTCATTGGAGGTTTCTATAGGACGTTATGTACCAATCAATTCAATGAAGTATAAAATACAATGTTTATGTAAAAATAAATAAATATAAATTTTCATTGCTGTAGGTTAATGAATGATTGTGACTGTTGAGTTACTTACCTGTAAAATCACAAGCTTTTCAATCTGAGACTCTGACAAATTTTCTAGACTTGTAACTTCTATTCGCATTCCCATAACTTGCTCACCACTGTAACAGAAGAAAGGCAAACTGGCAAAGCAGCTCTCATCTGTCCACTGGCCAAAGTATTTTAAAGACACAGCTGTGCAGTGTTGAGCTCCCTGCTGTCCTGGGACATATGCACCATTATCTGGTTGTGCAACATCACCTTGAATATATGGCAGCCAATATGTGAAGGAAGAGCTGCTCTGATCTGACCACAGTCTGTTTCTGTGTAGACCAATCCATACATTATAACTATAATAATAATAATAAGGTGCAATGCTCAGTATCTGTTGACGCTCCGTCTCATTTCTCACACTGGCCAGGTCTGTGTACATCTCTCTGCAGTAGCTCTGAGCTCCAGCCCAGGTCCTTCCAGTACTTACCCAGATATACTTCTGAGAGGCGTTTTCTCTACCATCATAGCAGACAAATGTGTAATAGTTGTCACATGATGAATCAAACCAGTTTCCATTATTATCCATGTAAACACACAGTTCATTCCCAGCGTTGTTGTTTGGTTCATGATACCAGTTCCTGAAATCTCTCTCTCCTTCCTGATAGAAATCATTGTCGTCCAGTGACCATCTCCAGCTGTTCACATCGTCATACAGTCCAATCCAGGCTGAACCATTGTAACTCCCATTAACTGTGTTGATCAGCCTGTTCATTTCCTCCATGTTATCAATGGTGGCCAGATCAGTGTAATTCTGTCTGCAGTATCTCTGAGCTTCAGTCCAGGTCTTTGACTCATTCACAAAATGATACTCCCAGGATAATGCACTGTAGCAAATGAAAGGTAAGGCAGTATTACAGTTTTCGTCTGTCCAGTTCCCAGAGTCACTAAATGACACTGCAGTGCAGTATTCTCTGTTTCCAGCATTATCTGGCTGTCCTGTCCTCCAGTTACTGAATGAAGAGTTGCTCTGATCTGACCAAGATCTGGTTCTGTACAGTCCAATCCAAACAACTGAATAATAATATTGTATTAATGACTGAACCCTGTAGTTTTCAATCTCATTCCTGATACTGATGAGGTCTGTGTGATGTTCTCTGCAGTAACTCTGAGCTTCAGTCCAGGTTTTGGACTGGTAAACCAACACATAACTTGTACTAGCATTCACTCTTCCATCATAGCAAACAAAGGGAAGTGTACTGGAGCAAGAGATTTCACTCCATGTTCCCCAATTATATGAACGCATGTACGCACACAGACTCTGTCCGCCTGAGTTTACTGGTGTCTGGATATACCAGCTTTTAAAACCTTTCTCTAAAGCTGCATCCTCCAGTGACCATCTCCAGCTGTTCAGATCATCATATAATCCAATCCAAGCTTTGCCATAGTAAGAGCCACGTGCTGTTTTAAAGAGCCTGTTCATTTCCTCCATGTTATCAATGGTGGCCAGATCAGTGTAATTCTGTCTGCAGTATCTCTGAGCTTCAGTCCAGGTCTTGGATTCATTCACAAAGTGATACTGACGGGTGCATGAAGATTGTGTGCAGGTTCTGCTGTAGCAGAAGAAAGGCATGCTGGATACACAGACCTCATCTGTCCATCGACCTGAATACTGGAATGATACTGCAGTGCAGTGCTGGTATCCATATTCATTAGCTTGATTATTTCCATTATCTGGTTGCGCCTGTGACCAAGGAATTTGCGGCCTCCAGTTTTGATAACTGGTAGTCTTATTGTTTGACCAAACCCTGTTTCTGTACAGTCCGATCCAGACTTGTCCACCTGATACCTGAAAGATCATCTGGTTCTCAGTCTGATTTCTCACATTGGCGAGATCTGTGTAATGCTGTCTGCAGTATCTACGAGCCTCTGACCAGGTTTTCCAGTTATAGACTCTGATGTAACTCTGTGTGGCATTTGCTCTACCATCATAGCAAACAAATGTGAGCATGTTGTCACATGACATATCATACCATTTTCCATCATAACTCATGTAAACACACAGCTGGTTCCCCCCATCATTGTTCGGTTCATGATACCAGTTCCTGAAATCTCTCTCACCATCCTGATAAAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53564 False 1707 lncRNA 0.38 6 10403274 10481243
TU53560 False 312 lncRNA 0.35 3 10447507 10478800
TU53558 True 2818 lncRNA 0.51 7 10472740 10481243

Neighbor

gene id symbol gene type direction distance location
CI01000006_10363884_10364804 NA coding upstream 37703 10363796 ~ 10365571 (+)
CI01000006_10177090_10192651 NA coding upstream 209755 10177090 ~ 10193519 (+)
CI01000006_09998680_10008491 LHX5 coding upstream 394226 9998680 ~ 10009048 (+)
CI01000006_09918611_09921465 MZT2B coding upstream 481481 9918611 ~ 9921793 (+)
CI01000006_09910027_09913958 NA coding upstream 489170 9909370 ~ 9914104 (+)
CI01000006_10518326_10566504 SFSWAP coding downstream 37083 10518326 ~ 10566504 (+)
CI01000006_10574971_10578629 NA coding downstream 93365 10574608 ~ 10578964 (+)
CI01000006_10593624_10605226 NA coding downstream 112001 10593244 ~ 10606273 (+)
CI01000006_10707037_10743311 MMP17, MMP17A coding downstream 225701 10706944 ~ 10743594 (+)
CI01000006_10747943_10768998 ULK1B coding downstream 266700 10747943 ~ 10769038 (+)
G47102 NA non-coding upstream 42907 10343313 ~ 10360367 (+)
G47079 NA non-coding upstream 99088 10303952 ~ 10304186 (+)
G47062 NA non-coding upstream 125906 10277124 ~ 10277368 (+)
G47054 NA non-coding upstream 134640 10264623 ~ 10268634 (+)
G47041 NA non-coding upstream 165745 10237327 ~ 10237529 (+)
G47148 NA non-coding downstream 12106 10493349 ~ 10495939 (+)
G47109 NA non-coding downstream 26707 10507950 ~ 10508752 (+)
G47217 NA non-coding downstream 36468 10517711 ~ 10517922 (+)
G47218 NA non-coding downstream 85411 10566654 ~ 10567299 (+)
G47220 NA non-coding downstream 134082 10615325 ~ 10616018 (+)
G46652 NA other upstream 244023 10156579 ~ 10159251 (+)
G45416 NA other upstream 1568577 8818814 ~ 8834697 (+)
G45355 NA other upstream 2190886 8209555 ~ 8212388 (+)
CI01000006_08198328_08199463 NA other upstream 2203129 8197881 ~ 8200145 (+)
G45336 NA other upstream 2381323 8019342 ~ 8021951 (+)
G47145 NA other downstream 4115 10485358 ~ 10511806 (+)
G47159 NA other downstream 934986 11416229 ~ 11521703 (+)
G47318 NA other downstream 1143024 11624267 ~ 11638252 (+)
G48094 NA other downstream 1796377 12277620 ~ 12279541 (+)
G48081 NA other downstream 1895763 12377006 ~ 12384827 (+)

Expression


Co-expression Network