stx6 (stx6,LOC107731540,LOC107669815,LOC107715114,LOC107653648)


Basic Information

Item Value
gene id stx6
gene name stx6,LOC107731540,LOC107669815,LOC107715114,LOC107653648
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 13453618 ~ 13465045 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240087.3
ACAGATCTGCTGACCTCTGCCCCGGATTGAGTAGAGGGAGTGATGGCGGAGGGCGCAGCTCAGTCCCGCACATAAACAAACCTTAAACCCTCAGCGCTCTCACAGCGGCCACAGACACGGGCACAGCCGCCGGGGTCTGGAGCATGACTTTATACCAGAGGAGCCATTTACTGTGAGCAGCACCATGTCGATGGAAGACCCGTTTTTCGTTGTGAAAGGAGAGGTCCAGAAGGCTGTGAACACTGCACAAGGTCTACACCAGAGATGGAGTGAGCTTCTTCAGGATCCTGGTGGTGCCTCCAAGGAGGAGGTAGACTGGACCACCAATGAGTTGAGGAACAGCCTGAGGTCTATAGAATGGGACCTGGAAGACTTGGATGAGACTATTAGTATTGTAGAAGCAAATCCAAGAAAGTTCAATCTTGATGCGGTAGAGTTGAGTAAAAGGAAAGCTTTCATCACCAGCACAAGACAGACTGTCAGGgaGATGAAAGACCACATGGCTAGCCCAATGGCTGTCACCATAACGGACAAGAAAAGCAGACAGACTCTGTTGGCAGAGGGAGGCTCTCATGGTCCAATTTGGCAaccaggaggaggaagaggagccggaggaggaggaggagtagcaGGAGGAGGAGACAGGTACACCCGGCTGGACCGAGAGCTCCAGACAGCCAACTCCCAGTTTATTGAAGAGCAACAGACCCAGCAGCAGCTCATAGCAGACCAGCAGGATGAACAGTTGGAGTTGGTGTCTGGGACCATCGGTGTGTTGAAGAACATGTCACAAAGGATTGGACAGGAGCTGGATGAACAGGCAGTCATGCTTGATGATTTCTCTCATGAGATGGACAACACTCAGTCCAGACTAGACAATGTGATGAAGAAGTTGGCCAAAGTCTCCCACATGACTAGTGACCGACGGCAGTGGTGTGCTATTGGCATTCTGTTGGCCATCCTGTTTGTTGTGATCATCCTGCTTATTGTTCTGTGAACGGCACTCGTCCCCCAAACACTACAGCTTTCCTCACCTGCACGGAAggatggacaaaaaaaaacaaacaaggtgCTTTTGGGGAAAGGAAACCACCTTCTTCTCCAGTTCTTATTCTGTCACACTGTCTGCTGTTGAGTATTACGCTTCTTTTGCAACTTTTTAGGCAACTCCAAAATGCCACAGGTGTGGTACTTTTGCTTATTTTGATTATCTGTAAATAtccattattttttctattgttttattttctgttttgttcatttttgaaGCCTAAACCCAAGAGGCTTGAACTAGAGTGGTCTGCATCACTTACTTTCTCTGTAAGTGTGTTACTGCAACATGTCACATTAGGTCTTTGTGTGTCAGTGAAGCTCTAAAGTGCTTTTTCTACTTTCTGCGTTTAGGACCCATCATGTTATTAATAGACGGTGATTTATTGAAGTAATAACCGGTTTATTCTTTCACAAATCTAGGGCTACCGTTTTATTAACTAATCATTTCGCTTCCTGTTCTGTGTACTTGTTCACTAAAATAGCAGTATGTTTGCTATGGTTATTAAGTACTGACTAATTGaagtaaacataaaaagctATACTAAACACTGGAGTTCCATGCTATGGAACTGGACTATTTTCTAACCacactaatattattttaaccacttattatattaattaatattttattttatgcttttcttctgaatttattaatcattttttcgTTCATTCATTCGTGTTCTTATTTTTGCAGTTGGTTGAAGTATAGAAATCTCCTAATGTACTTTAGGCTGAGTGAGCTTGATTATCCCtgactgaaaactgtttactgAAGTGTTTTGAAGATGGGAGCTTGTTTGGGTTACTGTTAACCGATATGGACTTGCAAGATTAGTGTGGGATTTCATTTAAAGAGTCTTAGCAGGAGATGGAGCTCCTGCTGCACAAAAAATGTTCAATAACTTCAACCTAGAGGTTTAGACATAGCATGTAAAAGGTGCATATTGCAGATTTTGTCCTAATTGGCTGTTGAATTACATGGAAGTGTTCTAATTAGGCAGGTTAAGCTCAAGCTTAGTTTGAAACCTGCTTGGCTAAGGAGTCCCACTTTCGAAATCTATCAAAACTAGCAGTGGATTCTGGTTAGTTTTTACCGTTTCTGAGCTGTTATCAAGTACATCAACAATAATCTAATAGCCACAATCGCAAATTGCGTCTTGTTTTTGCACTCCAGTGAgtactattgttttatttatttagtgtttccGAATGTCTTCCATGTTGTTTGAGTTCTTTTTGTTTAACTTTTGTTTATCTATGTTTACGAACAAAGTGTAAAATGATCAGTCATGACACTAAAACTAACTACATGAATTTTTGATGTTGGAGCATCTGTGTGAGCACCTGTAAGCCGTGACCCTGTAGCACGCCTCTTCACGGGTTGTCCTTTCCTGTAGCTCTTTGGTTGGTACTGACCACTACATATCAGGAACATCTCCAAGACCTGCATGAAGTATTTAATGACTCGTTTGATTGGGTTAGTAatcattttcaatttggttcTTGTCAAAGTATCCACTGAAGTATTTACTTTGCttaagttgttttaatgttatggctaatcaCTAGCTCTCcacatttaacataaatatagaatatatttaaatcttttttctcttccttatTTCAGTTGTCGACGTTAACAACCAAAAATagtacaaattaaaataaaaactaaattttccCGCTCTCATAAATTAGCTGGGCATCTTTCCCTGCTAAAAGGCTACTAAATGGATTGCTAACGTGTCGCCAGGAGCATCCAAGATTCTTTTTTGAGActtgattttgttttctttattcagTGCTCCACACATCGGCACAGACAGACAAGTGTAGATTGTGTAGCATTTCACAACATTGATCTGGCAATTCATGTGCCACTTTAATGTTTAACATTAATGCAAACACTTTCCAGTTTAATTAAACTTGTCTCCGTTTATATTTTGATGCATATGCATAcgggaatgtttttttttatcaaaaagtATTCATATCAGTATTGATATCATCACTGTAGTATTACTTACTGAATTGGATTGAATACTAGCTAAGGCTCGCTCAACTTTCTGGTATCAGTAGTAACTTCAGTACAGATTCATTTCTGTGCCAGGGTTTCTCTCTATGGCACCACACAACAACCTCAAAACCAAAGCTGTGTCCAAAACCGTGCCCTATTTACTATGTAGTGCACTACTTTACGGTTCTACAAAGTTGTATTGGTGTCTGAAAACAGTACAGAATTTTCAGTCCACTGTAACAATCCATAAATTGATTGAGATACATAGTTTAGAAACAGTGTACCCCAACTGACATGAAAGACCCATACTCTATTGCATTGCTTAAAGATCACCCTCTGTTTCCTATGATAAAGAAATGCTCTTTACTGTAAAGTGATCAGGATTTTTACATGTATGTGATAGTGATTAGGGCACATTTTTAGACACAGCTCAAgctataatattacataaaatgtGAAAGTTTATGTGAAATGTTGAtgtgtaaaaacacattttaggaGCAATAATAAGATATTTCTATTTCGAACAGATTATGAAATGATAACAAATAGAGATGTGTTGGTTTAAGGCAGCTGAAGGCCTGTTTTACTCGTGTTTCCTCAGAAGTTCCTTCCTGTTCATTGTGACTAACCATGTGATCAGCACACACATGAGTCTTTCATTTCATGTGCTGTGATGTGGAACTGAAGATCACTGCTAATAGCTCTGTTAAGATGATGTGTGAGTAGTCTTTACAATGGCCTGGATAGATCACTGTTAAAATCCACCTAGATTTTGTGGATTTAAGCCTACTGGAAAGCATATCAACCAGAGAATCAACCAGAAGCTGCTGTGAAGTATAGAAAACTTTGGAGATAGTGCCTTAGTATGATGTACAGTCAATTATTTCAGTCATGCAAGCTTAACAAATTCATGAAGTTTATTTTTTAGGGAGTTTTGCATAACACTTAAAGAGCCAATATCATAAACACCTCCTCACTTTTTAAGTAAATGATTGATGTAGTATGTATACATTGCGTACATGGCAGTCCATACACTCCATATATATCAAAATTTTTGCAAATATCTGCCTATCACTCTAAAGTTATACGAAGTGTTTCATTTGGACTGCTTTAAGGAGTGTAAAAAAATCCTGCCAACTTAATGGTCTGTTCAACCAAAAAAAGATTGTTGAcccaaatttttttttctatgatgTCACTTAAAATAAAGGTGATCCAAATGGTTCTTTAAGTGTGTATGGGATTAAGAGAGGTtggaaaaataatattttttggtaGAAGAATCCACACAGATTATTAATGAACCTCTGATGGaaaaatgtagtttatagaggTTTTCACATAAAATCTCTGGAAATTGTTCATGAAATTCGGTCTGAACGTTATTCGGATATGAATGGagatttttagatgttttaaatgcattctTATTTTAGGAAatgtaacataacaggaaatgtaacataaatgatTAAGGCAAGAGTGGGCCCATGGATCCTTTCCAGCAGTGTATTTTTCAAAAGATTACCttctgtattaaaatattatataaacttTGTACAAGGGAGCTGGCTGGATAAAATCACACCTCCACCAGGTAATGTCCAGAAATATTCTGGAATACTGAacatgagttaaaaaaaaaaaaaaacagataaatgcCTGGAATGAGCTCTTTAAACAGATGTGgaaacagtttaaacagtttatgGTGCattcatttctgcaaatatcCTTTTTCAggtttctttttgtttacacAATAACATACATACTTTTAGCATATTCTAATGGAACGGTTTTAATGTTTGTTAGtctttaatgtttgtttttatacagtttttggcAGTCCTAGCATTTCACTACGAGATAAGAGCAGAAGGTCTTGCAGGACATTTCAGAGAAATGTAGTGGTCTGATTTTTGGACAAGTTGGTCGATTTGTcccaaaatatacagaaatagtctcttgttttggtttgttttcacagttAAAGGATTACTTTGTTACCTAGTTATCACGAAGTTCGAGTATTCATACCGTTATGCAAGGTAATGATACAAAGAACAATAACCAAGAAAATCATGATCTTAAATTGCACAATCAAGTCACGGCTTATGAGGACCGGTGACAGGGTGGAGAGAATATGGTAGCGAATGGGCTTTTGTTATTCCATGTATTCAGAGTGTCATTTCTGTGTTAGTTTGACTTGTTTGTTTGAGAGAATGAACTGATGTCCCCTTGTTTCCCTTTAACTCCCAGACTCCCTCCCTAACCCTCTTTTCAGATTCAATCCTGTGTTTCATTCACTGTGTGGAAAACTGTGAGTCCCATTGAGTCCATTAAATGCTGAACTTTGCTGAA

Function

symbol description
stx6 Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in several processes, including retrograde transport, endosome to Golgi; vesicle docking; and vesicle fusion. Predicted to act upstream of or within Golgi vesicle transport. Predicted to be located in Golgi membrane. Predicted to be part of SNARE complex. Predicted to be active in endomembrane system. Predicted to be integral component of synaptic vesicle membrane. Orthologous to human STX6 (syntaxin 6).

NR:

description
PREDICTED: syntaxin-6

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006906 vesicle fusion biological_process
GO:0048193 Golgi vesicle transport biological_process
GO:0042147 retrograde transport, endosome to Golgi biological_process
GO:0016021 integral component of membrane cellular_component
GO:0031201 SNARE complex cellular_component
GO:0005484 SNAP receptor activity molecular_function

KEGG:

id description
K08498 STX6; syntaxin 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240087.3 True 5446 mRNA 0.38 8 13453618 13465045

Neighbor

gene id symbol gene type direction distance location
patj patj,LOC107715056,LOC108245549 coding upstream 88297 13162062 ~ 13365321 (+)
nfia nfia,LOC107592693,LOC107599440 coding upstream 359001 12860134 ~ 13094617 (+)
LOC103025446 nphs2 coding upstream 796504 12649751 ~ 12657114 (+)
hnrnpm hnrnpm,hnrpm coding upstream 1023772 12420587 ~ 12429846 (+)
march2 march2,LOC106613717,LOC107592682,LOC107655247 coding upstream 1033975 12407546 ~ 12419643 (+)
LOC103033790 LOC103033790,LOC108429474 coding downstream 87867 13552912 ~ 13559630 (+)
LOC103024927 NA coding downstream 97187 13562232 ~ 13590417 (+)
LOC103034113 ttc39c,LOC108429509,LOC108270684,LOC107653643,LOC107669847,LOC105898295 coding downstream 127583 13592628 ~ 13612412 (+)
trmt13 trmt13 coding downstream 201357 13666402 ~ 13673565 (+)
rtca rtca,LOC107715104,LOC107669846,LOC107653637 coding downstream 229811 13694856 ~ 13700883 (+)
G42195 NA non-coding upstream 81813 13369304 ~ 13371805 (+)
G42182 NA non-coding upstream 86758 13366004 ~ 13366860 (+)
G42193 NA non-coding upstream 96388 13356659 ~ 13357230 (+)
G42181 NA non-coding upstream 169068 13256435 ~ 13284550 (+)
G42178 NA non-coding upstream 313451 13139789 ~ 13140167 (+)
G42209 NA non-coding downstream 7582 13472627 ~ 13475836 (+)
G42220 LOC108429511,LOC100711005,LOC101481666,LOC102215641,LOC107731533,LOC103137085,LOC107715111 non-coding downstream 65307 13530352 ~ 13536026 (+)
G42389 NA non-coding downstream 533875 13998920 ~ 14002697 (+)
G42386 NA non-coding downstream 556598 14021643 ~ 14025396 (+)
G42442 NA non-coding downstream 591553 14056598 ~ 14073336 (+)
G42208 ier5 other upstream 3141 13448592 ~ 13450477 (+)
G42096 LOC108429524,LOC108271269,LOC103369106,LOC106613566,LOC106574586 other upstream 738590 12705559 ~ 12715028 (+)
G42068 NA other upstream 820189 12632816 ~ 12633429 (+)
LOC103047294 gpx4,gpx4a,LOC108429535 other upstream 1112705 12334344 ~ 12340913 (+)
tmem221 tmem221 other upstream 1694910 11753887 ~ 11758708 (+)
LOC103032215 NA other downstream 43975 13509020 ~ 13522257 (+)
LOC103034435 NA other downstream 152038 13617083 ~ 13622042 (+)
LOC103037142 LOC108429501 other downstream 345788 13810833 ~ 13857361 (+)
eps15l1 eps15l1 other downstream 605378 14070423 ~ 14134546 (+)
G42605 NA other downstream 1430017 14895062 ~ 14899248 (+)

Expression


Co-expression Network