LOC103033790 (LOC103033790,LOC108429474)


Basic Information

Item Value
gene id LOC103033790
gene name LOC103033790,LOC108429474
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 13552912 ~ 13559630 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240096.3
gcataactcaaCGGAAAACTGGTccaaaatgaaatttaaaaggCAAAAGGAGAAGCTACAACTTGACTACATCTGGAACAATATTACCACAGAACCTGTAGAGCGGAGAAAACCCAGTTAAGAATATCGTCTGGGTTTGTTGGACCACCTAAAGGCGCTCCAGAACACTCGCCGAGTCCACTGGGTGGAGCTGTTCAGCAGGACGGTGCTGCTTGGCCTGTTTTTGTGTGCACCACTCAGAGCAGCCACAGAGTCTGAGGAAGATTCACCCACAGAGTGGACACTGTGGAAGAAAGCCAACGGAGTGTCGTATGAAGAAGAGGCTGATGACATGGAAAGAAAAGCCATCTGGGAGAACAATAAAAGAGTGATTGAGGATAACAACAGAAAATTCAGTAGGGGCCTTTCAAAATTCACCATGGCAATGAACAAATATGGTGATTTGGACAAAATGGAGTATAAGCAGTTACAGGgagctaacatcaatgctaggTTGAAACGGACAGGGAAGATTGCCTCTGCAAAGAAGCTGCACTTCCATGCTAAGAAATTGAGGTCACTCAAAGTGGACTACAGGACATTGGGATACGTCACAGAGGTCAAAGATCAGGGCTACTGTGGGTCATGCTGGGCTTTCAGCACTACAGGTGCCATCGAGGGACAAATGTACAAGCAGTCAGGTCAGCTGGTGTCTCTTAGTGAGCAGCATCTGGTAGACTGCTCCAGATCTTATGGAACGCACGGCTGCAGCGGCGCCTGGATGGCGAACGCATATGACTACATAATCAGCAACGGGCTTCAGGCCACCAACACTTACCCTTACACCTCAGCGGACACACAGCCATGTTTCTATGACCCCAGCCTAGTCGTAGCCCAAATCAGCGACTACAGATTCATTCCCAAAGGAGATGAACAGGCATTGGCTGATGCCTTGGCAGTTATTGGGCCAATCACTGTTGCAGTAGATGCTGATCACTCCAGCTTTATGTTCTATAGCTCAGGGATCTATGAAGAGCCTAACTGCAATCCAAACAACCTCAGCCATGCTGTGCTTCTGGTTGGCCATGGCTCTGAAGGCGGCAGGGATTACTGGATCATCAAAAACAGCTGGGGCACCGGCTGGGGTGAAGGAGGTTACATGCGCATGATTCGAAATGGCAGCAACACCTGTGGCATCGCCAGCTATGCTCTTTACCCCATCCTATAAGGGTTTTGTATATCTCATTAAAGagtgttgtttgtgttttaa
>XM_015603311.2
AAACACACCTATCACACAGTATATAAACAGGGAACGTACCCGGCTGTAGTGACAGTGACCTCCGGACAGTGCACAGGACCCTCACTACCCAATTCTACCTCTAGACAGAGCTTTGCAGTAACATGCCGGACACTCGCCGAGTCCACTGGGTGGAGCTGTTCAGCAGGACGGTGCTGCTTGGCCTGTTTTTGTGTGCACCACTCAGAGCAGCCACAGAGTCTGAGGAAGATTCACCCACAGAGTGGACACTGTGGAAGAAAGCCAACGGAGTGTCGTATGAAGAAGAGGCTGATGACATGGAAAGAAAAGCCATCTGGGAGAACAATAAAAGAGTGATTGAGGATAACAACAGAAAATTCAGTAGGGGCCTTTCAAAATTCACCATGGCAATGAACAAATATGGTGATTTGGACAAAATGGAGTATAAGCAGTTACAGGgagctaacatcaatgctaggTTGAAACGGACAGGGAAGATTGCCTCTGCAAAGAAGCTGCACTTCCATGCTAAGAAATTGAGGTCACTCAAAGTGGACTACAGGACATTGGGATACGTCACAGAGGTCAAAGATCAGGGCTACTGTGGGTCATGCTGGGCTTTCAGCACTACAGGTGCCATCGAGGGACAAATGTACAAGCAGTCAGGTCAGCTGGTGTCTCTTAGTGAGCAGCATCTGGTAGACTGCTCCAGATCTTATGGAACGCACGGCTGCAGCGGCGCCTGGATGGCGAACGCATATGACTACATAATCAGCAACGGGCTTCAGGCCACCAACACTTACCCTTACACCTCAGCGGACACACAGCCATGTTTCTATGACCCCAGCCTAGTCGTAGCCCAAATCAGCGACTACAGATTCATTCCCAAAGGAGATGAACAGGCATTGGCTGATGCCTTGGCAGTTATTGGGCCAATCACTGTTGCAGTAGATGCTGATCACTCCAGCTTTATGTTCTATAGCTCAGGGATCTATGAAGAGCCTAACTGCAATCCAAACAACCTCAGCCATGCTGTGCTTCTGGTTGGCCATGGCTCTGAAGGCGGCAGGGATTACTGGATCATCAAAAACAGCTGGGGCACCGGCTGGGGTGAAGGAGGTTACATGCGCATGATTCGAAATGGCAGCAACACCTGTGGCATCGCCAGCTATGCTCTTTACCCCATCCTATAAGGGTTTTGTATATCTCATTAAAGagtgttgtttgtgttttaa

Function

NR:

description
cathepsin L1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240096.3 True 1249 mRNA 0.48 8 13554570 13559630
XM_015603311.2 False 1214 mRNA 0.49 8 13552912 13559630

Neighbor

gene id symbol gene type direction distance location
stx6 stx6,LOC107731540,LOC107669815,LOC107715114,LOC107653648 coding upstream 87867 13453618 ~ 13465045 (+)
patj patj,LOC107715056,LOC108245549 coding upstream 187591 13162062 ~ 13365321 (+)
nfia nfia,LOC107592693,LOC107599440 coding upstream 458295 12860134 ~ 13094617 (+)
LOC103025446 nphs2 coding upstream 895798 12649751 ~ 12657114 (+)
hnrnpm hnrnpm,hnrpm coding upstream 1123066 12420587 ~ 12429846 (+)
LOC103024927 NA coding downstream 2602 13562232 ~ 13590417 (+)
LOC103034113 ttc39c,LOC108429509,LOC108270684,LOC107653643,LOC107669847,LOC105898295 coding downstream 32998 13592628 ~ 13612412 (+)
trmt13 trmt13 coding downstream 106772 13666402 ~ 13673565 (+)
rtca rtca,LOC107715104,LOC107669846,LOC107653637 coding downstream 135226 13694856 ~ 13700883 (+)
cdc14a cdc14a coding downstream 150416 13710046 ~ 13793719 (+)
G42220 LOC108429511,LOC100711005,LOC101481666,LOC102215641,LOC107731533,LOC103137085,LOC107715111 non-coding upstream 16886 13530352 ~ 13536026 (+)
G42209 NA non-coding upstream 77076 13472627 ~ 13475836 (+)
G42195 NA non-coding upstream 181107 13369304 ~ 13371805 (+)
G42182 NA non-coding upstream 186052 13366004 ~ 13366860 (+)
G42193 NA non-coding upstream 195682 13356659 ~ 13357230 (+)
G42389 NA non-coding downstream 439290 13998920 ~ 14002697 (+)
G42386 NA non-coding downstream 462013 14021643 ~ 14025396 (+)
G42442 NA non-coding downstream 496968 14056598 ~ 14073336 (+)
G42446 NA non-coding downstream 527279 14086909 ~ 14146357 (+)
G42469 NA non-coding downstream 600775 14160405 ~ 14160711 (+)
LOC103032215 NA other upstream 30655 13509020 ~ 13522257 (+)
G42208 ier5 other upstream 102435 13448592 ~ 13450477 (+)
G42096 LOC108429524,LOC108271269,LOC103369106,LOC106613566,LOC106574586 other upstream 837884 12705559 ~ 12715028 (+)
G42068 NA other upstream 919483 12632816 ~ 12633429 (+)
LOC103047294 gpx4,gpx4a,LOC108429535 other upstream 1211999 12334344 ~ 12340913 (+)
LOC103034435 NA other downstream 57453 13617083 ~ 13622042 (+)
LOC103037142 LOC108429501 other downstream 251203 13810833 ~ 13857361 (+)
eps15l1 eps15l1 other downstream 510793 14070423 ~ 14134546 (+)
G42605 NA other downstream 1335432 14895062 ~ 14899248 (+)
LOC103036127 cunh19orf24 other downstream 2418856 15978486 ~ 15984632 (+)

Expression


Co-expression Network