LOC103034113 (ttc39c,LOC108429509,LOC108270684,LOC107653643,LOC107669847,LOC105898295)


Basic Information

Item Value
gene id LOC103034113
gene name ttc39c,LOC108429509,LOC108270684,LOC107653643,LOC107669847,LOC105898295
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 13592628 ~ 13612412 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240097.3
agagagagagagactacagGGGCTGCTGGAGTGTGTTTGCTGTGGGTGTTTGCTGTGTGTCCCTGCAGCTCCACAGCTCTACACTGAAAACGCACACATAGGAGACACAGGAGGACTGACTGAAGCCTGAGCctccattattattatcatcatcaggATGataagagcagcagcagcaggtccaGCCCTGCACTGAGCAGCAGATTCACCCCTAAACACCATGAGGAACCTCCAGCAGAAGCTGCCTGAGGTGTGAACATCACGACATGCCATCTGAGCATCTCCGGGCTGGGCTGTGTTTCTTCCTGCTTGCCGGGTGAAGGAAGGAGCTGAGGGGGCagtagatagacagataaataaacagacagacagatagatagatagagaaagggtagagagagagagagagagatagatgcaGTGCTGGATGGTAAAGAGCGGTTTTAGCTCCAGCTGCGCGGTTCCTCGCTCTTAATTCGGCGGTATCGTTGCTCGGTGGATGCGCGGCGGGCGCTGCGGTGGTCGTGCCGAGGCCTGAGGGAGCGGGAGCCGGGTAGGAGCGCAGTAATGGCGGGTCcggaggagcagcagcagcagcagagagtggaggaggagaaggcgGATCAGATAGAGGATGCAGAGCTCGCCTTTCAGGGCATCAACATGCTGCTCAACAACGGCTTCAAGGAGAGCGACGAGCTCTTCAGGAGATACAGGACCCAAAGTCCACTGATGAGCTTTGGAGCCAGTTTTGTTTCCTTCTTgAATGCCATGATGACGTTTGAGGAGGAGAAGATGCAGATGGCTTGTGATGACCTGCGAACCACAGAGAAGCTGTGCGAGAGTGATAACGTTGGCGTCATCGAGACCATCCGTAAAAAGATTAAGaacagtATGGACTCTCAGAGGTCGGGGATGGCGGTAGTGGACCGGCTCCAAAGGCAGATCATTGTGGCTGACTGCCAGGTCTACCTCGCTGTACTCTCCTTCGTCAAACAGGAACTATCAGCTTACATTAAAGGAGGCTGGATCCTCCGCAAGGCTTGGAAGATGTACAACAAATGCTACAGCGACATCAGCCATCTTCAGGAAGTCTGCCGTCGACGCTCCTCCAGCCAGCAGGGGGACCTTTCCCCTGATCAGGCCAACCACAACACCCCTGAGGCGGAAAGTAGCGGAGGGGTAACGGAGGAGGCCCTGGGTCGCCTGAAGGGGTCAGTCAGCTTCGGCTATGGCCTCTTCCACCTCTGTATCTCTATGGTGCCTCCACACCTGCTGAAGATTGTCAACCTGCTGGGATTCCCCGGAGACCGTCACCAAGGCCTGGCTTCTTCCTACGCAAGCGAGAGCAAAGACATGAAGGCACCTCTGGCTACGCTGGCCCTCCTGTGGTACCACACTGTAGTCCAGCCATTCTTCGCCCTGGATGGCTCTGACTCCAGGGCTGGGCTTTTGGAAGCCAAGGCCATCCTGCAGAAGAAAGCAGTGATCTACCCCAActcatctctctttatcttcttcAGAGGACGTGTGCAGAGGTTAGAGTGCCAGATCAACAGTGCACTGACATCCTTCAATGATGCTCTGGAGTTTGCCTCAGACCAAAGAGAGATTCAACACGTGTGTCTATATGAGATCGGTTGGTGCAGCATGATTGAGATGAATTTTGAAGATGCATACAAGGCTTTTGAAAGGCTGAAGAATGAGTCCAGATGGTCACAGTGTTACTATGCTTACCTAACTGGAATATGTCAGGGTGCATCTGGTGACCTAGAGGGGGCGAAAGGAATTTTCAGAGATGTTCATAAGCTCTTCAAACGCAAGAACAATCAGATCGAGCAGTTTGCCTTCAAGAGGGCTGAGCGGCTGAGGAAGATATCTGCCTCACAGGAGCTTTGTATTCTGGGAGTTGTGGAGGTGCTGTACCTGTGGAAGGCCCTTCAGAACTGCTCGTCCTCCAAACTCCAACTTATGAGCCAAGTGCTGCAGGGTCTGGATGACCCGTCTTGCCAGGGCTTAAAACACCTGCTTCTCGGTGCTATTCAGAAATGTCTTGGAAACATTAAGGATGCCGTTCAGTCTTGTCAGATGGCAGTCAGGGATGAACTGGGCCGACAGACCAACTCGTACGTGCAGCCGTATTCCTGCTATGAGCTGGGATGTGTGTTATTGGCAAAACCTGAGACTGTGAGTAAAGGGAGATCATTACTGCTTCAGGCAAAGGAGAACTATGCAGGATACGACTTTGAGAACAGACTGCATGTGCGAATCCACGCAGCCCTGGCCTCCCTGAAGGACGTGGTCCCCCAGTAACCCTGCCGAGCCCAGGACACGCATTGTAAAGTGACCACTCCTGTCTAGCACTTTTAAAGATGCAAGCCATTGGAAACAACAGTGTATTTCTCTCACTTGGTTCTTCATGTTTGGATGAACACAAAGAAGGACACTTCAGTTTTGAAGAACTGACGTTGAAACCCTGTAGTGTTTATTTTCGTCATTGCTCATTGCTCAGAGTGACTCACATAACAGTAGCTGTTAAGTTGTTTAGTATTCGTCATTACGTGGTAGTCTGTGCCTAAAGATGTAGAAAAATTTTGGTTAATTTTGAACAAGTTCTGTTTTGAGATGAATTAAACCCATCAGCACGCCCATTAA

Function

symbol description
ttc39c Acts upstream of or within cilium assembly; determination of heart left/right asymmetry; and otolith morphogenesis. Is expressed in nervous system and trigeminal placode. Orthologous to human TTC39C (tetratricopeptide repeat domain 39C).

NR:

description
PREDICTED: tetratricopeptide repeat protein 39C isoform X1

GO: NA

KEGG:

id description
K24943 TTC39; tetratricopeptide repeat protein 39

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240097.3 True 2655 mRNA 0.51 15 13592628 13612412

Neighbor

gene id symbol gene type direction distance location
LOC103024927 NA coding upstream 2211 13562232 ~ 13590417 (+)
LOC103033790 LOC103033790,LOC108429474 coding upstream 32998 13552912 ~ 13559630 (+)
stx6 stx6,LOC107731540,LOC107669815,LOC107715114,LOC107653648 coding upstream 127583 13453618 ~ 13465045 (+)
patj patj,LOC107715056,LOC108245549 coding upstream 227307 13162062 ~ 13365321 (+)
nfia nfia,LOC107592693,LOC107599440 coding upstream 498011 12860134 ~ 13094617 (+)
trmt13 trmt13 coding downstream 53990 13666402 ~ 13673565 (+)
rtca rtca,LOC107715104,LOC107669846,LOC107653637 coding downstream 82444 13694856 ~ 13700883 (+)
cdc14a cdc14a coding downstream 97634 13710046 ~ 13793719 (+)
gpr88 gpr88 coding downstream 189056 13801468 ~ 13805106 (+)
slc30a7 slc30a7,LOC107588064 coding downstream 249305 13861717 ~ 13891132 (+)
G42220 LOC108429511,LOC100711005,LOC101481666,LOC102215641,LOC107731533,LOC103137085,LOC107715111 non-coding upstream 56602 13530352 ~ 13536026 (+)
G42209 NA non-coding upstream 116792 13472627 ~ 13475836 (+)
G42195 NA non-coding upstream 220823 13369304 ~ 13371805 (+)
G42182 NA non-coding upstream 225768 13366004 ~ 13366860 (+)
G42193 NA non-coding upstream 235398 13356659 ~ 13357230 (+)
G42389 NA non-coding downstream 386508 13998920 ~ 14002697 (+)
G42386 NA non-coding downstream 409231 14021643 ~ 14025396 (+)
G42442 NA non-coding downstream 444186 14056598 ~ 14073336 (+)
G42446 NA non-coding downstream 474497 14086909 ~ 14146357 (+)
G42469 NA non-coding downstream 547993 14160405 ~ 14160711 (+)
LOC103032215 NA other upstream 70371 13509020 ~ 13522257 (+)
G42208 ier5 other upstream 142151 13448592 ~ 13450477 (+)
G42096 LOC108429524,LOC108271269,LOC103369106,LOC106613566,LOC106574586 other upstream 877600 12705559 ~ 12715028 (+)
G42068 NA other upstream 959199 12632816 ~ 12633429 (+)
LOC103047294 gpx4,gpx4a,LOC108429535 other upstream 1251715 12334344 ~ 12340913 (+)
LOC103034435 NA other downstream 4671 13617083 ~ 13622042 (+)
LOC103037142 LOC108429501 other downstream 198421 13810833 ~ 13857361 (+)
eps15l1 eps15l1 other downstream 458011 14070423 ~ 14134546 (+)
G42605 NA other downstream 1282650 14895062 ~ 14899248 (+)
LOC103036127 cunh19orf24 other downstream 2366074 15978486 ~ 15984632 (+)

Expression


Co-expression Network