trmt13 (trmt13)


Basic Information

Item Value
gene id trmt13
gene name trmt13
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 13666402 ~ 13673565 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240101.3
CGCAGTGTGTCAGCATGGCTGAAGCGCTGTGTGACGGTGTGGCAGCTCCTCTACCTGGAAGATGCGCTTTTTACGTTATAAAGAAGAAGCGTTACTGTAAAATGGTGATCGGACGTGGAAAGTCGTTTTGTGGGGAACACGCAGATGCAgacaaagacagtgagagaaaaaggATCCCCTGCCCTCTGGACCCCAAACACACTGTTTTTGAAGACAGTTTAGCAAAACACCTGAAAAAGTGCAACTCGAAAGAGAAGCCCAAGCCTGTTTATTATGTGAAGGACATCAATGCAGGATCTGTAAATGAAGAGGAGGATGTCATCAGTGAGGTGTCTATTGCTGAACGAACCAAAGAGGAGCTGGATGATCTTATAGGGAAACTGAAGACTGCATTAAAAGGATTAAACATCAAACCTGACAGCAGCATTCTCTCTCATCCCGCGCTCCATGAAGCTCTCAATGATCCAAAGAATGGCAACTTTGCTTTCAAACACCTCAAGCAGCAGGCCTCAATCCTGGGGAACATGGAGGCCTTGGAGCTGCTTGGTCCTGGCAGGTGTTATGTGGAGTTTGGTGCTGGTAAAGGGAAGCTTTCCCACTGGATTCATGTGGCCATTGAGCAAGCTAAGGATATCCACTTTCTACTGGTGGAAAGGTCCAGCACTCGATTTAAGGTAGATGGcaagcacaaaaacacagatgcaATATTTGACAGGCTGCAGGTTGACATTCAGCACCTTGACTTACGAAAAGTGCCATTTTTAAGAGAAAAGGGACTTCCTGTCATCGCAGTGGGTAAACACCTGTGTGGCGCAGCGACAGATCTGACTCTGAGATGTTTATTTGAGCACAATCTCAAAGACCAAGACTGTGATCCACCCACCAAACGTGTGAAGCTCAATGAGGGATCTGAGGAGGACACCAAACCTGGAGAAGAACTTAAAGTCTCGGGGGTTGCCATTGCAGTCTGCTGTCATCACCGCTGTGACTGGAGGCACTATGTGGGAAAACAGTTCTTTAGGGAACGAGGTCTTGGAGTTCGAGAGTTTGACGCCTTCCAGCGCATGTCCAGCTGGGCTACCTGTGGCATGAGTAGGGTAGGCCAAGGTCACAAGAATTTGAAGCAAGAAGAAGTCAGGAGGACAgatgaaaaacaacaaaaagaagaagatgtggaagaggaggaggatgaggcaGAACATGAAGGCAGTTCTGAAACCATACCAGATAACCTTAACAGCGCTGTATCAGCAGAAGAGCGGGAGCAGATTGGACGCCTCTGCAAGACGCTGATTGACCAGGGCAGGCTGCATTACCTCCAGCAGCGAGGGTTTAAGTCCAATCTTAGTTATTACACCAGCCGAGACGTGTCTTTGGAGAATGTTCTTCTGACTGCTGTTCCTATCTAAAAACATTAAGCCTAAAACTGGACATGGACAGTGCTGTACATACAgtactttttaattgtttaattctaATTGAGTCTTTTGACAAGCAATCAGATGAGGTTTTGATTTCCTCCACTTTCACTTTTCTATCTTAAGTTTCTTCTTTGCCATAAACAAGACACAGATAGCTGTAAGGCTATGGCGCCCTCTAGTGTTGTGACTGCAAAGGTAGAATGCAGAACAGTCTTTACAGGATGAGCAGAACAAGCAAGACAGGACTGGACGTGACAGGACAGGACCAGACAGGACAGGTCTGGCCTCTTTGGACGGAAGACAGCAGAGCAGACAGTGGCATGCAGGACATCACAGCTATGGAGCAGCAATCTCTACCACACCTTCCAGTGCCACATTCAGCACAGAGGTATAAGTCTGGGAATCTGAAAcacagtatagattataaattAGATTGAAAGCAGATCATTCTCAGGcttaaatacaattattttattgttttttacatttatttttaaatatatatattttatataaaaacattgcTATAGTTTGTGCACACAGTGCATGTTGAGTACAGCGTAACCTCTTTTGCGAGCCTCATGGATGTAGTAATTCATGAACTCTCGGCCAAACATTTCCCTGtcatcttcttcctcctccacgtCCTCTTTCACGTCCGGCAGGGTCACGTGATATGTCAGCGGATTGTCTCGGAAATTTACAAACCTGCCAAAAATCAAAGCGTCAAATTTTGTAGAATCGTTTGTGAAGGattttgttttcattaataaaatctgattttatttta

Function

symbol description
trmt13 Predicted to enable tRNA methyltransferase activity. Predicted to be involved in tRNA methylation. Predicted to act upstream of or within methylation and tRNA processing. Orthologous to human TRMT13 (tRNA methyltransferase 13 homolog).

NR:

description
tRNA:m(4)X modification enzyme TRM13 homolog

GO: NA

KEGG:

id description
K15446 TRM13, CCDC76; tRNA:m4X modification enzyme

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240101.3 True 2211 mRNA 0.45 11 13666402 13673565

Neighbor

gene id symbol gene type direction distance location
LOC103034113 ttc39c,LOC108429509,LOC108270684,LOC107653643,LOC107669847,LOC105898295 coding upstream 53990 13592628 ~ 13612412 (+)
LOC103024927 NA coding upstream 75985 13562232 ~ 13590417 (+)
LOC103033790 LOC103033790,LOC108429474 coding upstream 106772 13552912 ~ 13559630 (+)
stx6 stx6,LOC107731540,LOC107669815,LOC107715114,LOC107653648 coding upstream 201357 13453618 ~ 13465045 (+)
patj patj,LOC107715056,LOC108245549 coding upstream 301081 13162062 ~ 13365321 (+)
rtca rtca,LOC107715104,LOC107669846,LOC107653637 coding downstream 21291 13694856 ~ 13700883 (+)
cdc14a cdc14a coding downstream 36481 13710046 ~ 13793719 (+)
gpr88 gpr88 coding downstream 127903 13801468 ~ 13805106 (+)
slc30a7 slc30a7,LOC107588064 coding downstream 188152 13861717 ~ 13891132 (+)
s1pr1 s1pr1,LOC107715096,LOC107592715,LOC107669844 coding downstream 307626 13981191 ~ 13984481 (+)
G42220 LOC108429511,LOC100711005,LOC101481666,LOC102215641,LOC107731533,LOC103137085,LOC107715111 non-coding upstream 130376 13530352 ~ 13536026 (+)
G42209 NA non-coding upstream 190566 13472627 ~ 13475836 (+)
G42195 NA non-coding upstream 294597 13369304 ~ 13371805 (+)
G42182 NA non-coding upstream 299542 13366004 ~ 13366860 (+)
G42193 NA non-coding upstream 309172 13356659 ~ 13357230 (+)
G42389 NA non-coding downstream 325355 13998920 ~ 14002697 (+)
G42386 NA non-coding downstream 348078 14021643 ~ 14025396 (+)
G42442 NA non-coding downstream 383033 14056598 ~ 14073336 (+)
G42446 NA non-coding downstream 413344 14086909 ~ 14146357 (+)
G42469 NA non-coding downstream 486840 14160405 ~ 14160711 (+)
LOC103034435 NA other upstream 44360 13617083 ~ 13622042 (+)
LOC103032215 NA other upstream 144145 13509020 ~ 13522257 (+)
G42208 ier5 other upstream 215925 13448592 ~ 13450477 (+)
G42096 LOC108429524,LOC108271269,LOC103369106,LOC106613566,LOC106574586 other upstream 951374 12705559 ~ 12715028 (+)
G42068 NA other upstream 1032973 12632816 ~ 12633429 (+)
LOC103037142 LOC108429501 other downstream 137268 13810833 ~ 13857361 (+)
eps15l1 eps15l1 other downstream 396858 14070423 ~ 14134546 (+)
G42605 NA other downstream 1221497 14895062 ~ 14899248 (+)
LOC103036127 cunh19orf24 other downstream 2304921 15978486 ~ 15984632 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other downstream 2767366 16440931 ~ 16446287 (+)

Expression


Co-expression Network