gpr88 (gpr88)


Basic Information

Item Value
gene id gpr88
gene name gpr88
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 13801468 ~ 13805106 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240105.3
tctctctctcccccccccccccctctctcttcctcctcctgttgTAAGTGAGGATGAGCTCTGTATCCTGACGCGTGTCTCCTCCGCCGCGCGCTGCTGCTGTGAGTCGCGCGCTCCGCTGCGCTGCCATGCGGAACcactcctcctccctctctccggAAGACTGTCTGCACGGGCGCGCGGCGCGTCTCTCTCTGGCGGCCGCGTACGCGCTGCTGTGCGCCGGCGGGCTCGCGCTCAACCTGTCGGTGGTGTGCGTGGTGGGGGGATTCCGCAAGCTGCGCACCGCGAGCAACGCCTTCATCGTAAACGGCTGCGTGGCGGACCTGCTGGTGTGCGCCGTGTGGATGCCGCAGGAGGCGGTGGCCGTGTCCACCGGGGGCGGGGTGGGTCCGCCGGCGCTGCGGGCGCTCCGGgaggcgctgctgctgctgggcatCACGGTCTCGCTGCTGTCCCACTCGCTGATCGCCGTCAACCGCTACGTGCTGATCACCAAGAGCCCTGGCACCTACCAGGCGCTCTACCAGAAGCGGCACACGGAGTGGATGATAGCGGGGTCCTGGCTCATCTCCCTGGCGTCCCTGCTGCCCTGGATCACCGGCTTCGGCTCCAGGCTGGAGGGATGCTCAGCATCTCTATCACTTTCctcatcagcatcagcatccgCATCTCCCTCCCCACTTCCATCAGCGCTGGCATCAGCAGTACTCTCAGCATCAGCATCTCCATCACTTCCACCACCAACATCATCTGCATCAGTATCCCCAGCATCAGGACCACTTTCAGCATCAGCAACATCAGCATCACCAACACCTGCAGCATCAGGACCACCACCAGCATCCTCAACAACCATTACAGCATCCTCCGCATCCTTCACCATGGGCATTCCCCTTCTTACCCACCCCCCTTCAGCCGGCACCCTAGCCCTCACCATCCTGGGTCAGACAGCCGTGGTCCTCTACTGCTACTTCAAGATCTTCCGCCGCGTCCAAAGCAGCGTGAAGCGGGTGAGCGTCCTGAACTTCCAGCTGGTCAACAGCCTCCCCTGCGCCTTTCCCCGCAAGGACCGGCGCCTGGGCCTCTGCGTCCTGGCCGTGTGCTTCGTGTTCCTGCTGACCACGCAGCCCCTCTGCTGGACGCTGGCGGCCGCCGTCTTCACTCGGGTGCCCGGCCCGCTCTGGACCTTCTCCTGGCTCCTGTTCTGCACCGTGTTCGTGTCCAACCCGTTCCTCTACACCTGGAAGAACGAGGAGTTCCGGAGGTCTCTGAGGTGTGTGGTGCGGGGAGAGCTGTGGAGGGGGTCCACGGTGGGAGTGGAGCCCAGCACGGTCAGCAGCATCTCACACCTTCTGCCCCGACAGAGCAGCCGCAGGGCTTTCCTGAGCCAGGCGAACTGAACCCATCCTGTCTGTACTGTTAAACATAATCAGAGTcattttgatgatgatgatgatgaggatgatgaagatTGTAATGTGACTTTAATGATGGTGGTGATTGTGGTAATGGTAGTAATGATAAAGATGGTGTTGGCAGTGGTGATGATagttgaatttttttaaatcatgacaCAGATGAAGATAAAGTAGATAAAGTTGTGTGAATGAACATGATGGtaaagataatgatgataataatagcaaattattttaatgatgatgatggtgatgatgataagTTCCTTATTGCTATGATACTTAAGATGATCATAGATTTTATAAGAGTTGATAATGGTAAAGATCCTtctgatgatgataatgatgagtaTTTCATGTTCATGTGGTGATGAGAAAGTTGATGATGGTAGATTAAACAGTATTTTCATTTATGATGAAGATTCTACTGATGGTCATTTGTATGagaataattataaaattataaaataattatctgaaatataatattttgatGGTACTGATGAAGATACTGGTGATGAGGATGATAGATAATAATTTAAGAGATAATAAAGATTGTACCaatgataaaaatgttgacaGTTGTTAGGATGGTGGTGACAATGACAATGAGGATAATGAAGATTATAGATGATAATTATTCTAATGATAATGGACAGCAATAGCAATTATGTTTATGATGGAAGATAATAATTGTTGATAATGATACAGATCCTGCCAATAGTGATGATAATGATGTTAATGCATCATTAAAATCATTGGTAATGTGGTGGCTTATTAGGATGATGAGGAGTATGATGATTATCATGATGGAAATTGTTGAAAATAATGTAATGATGATTGattatgtggaaatgataaTGATGGTAAAGATGGTAGACAATCATTTTTGGGGATGATGCTATGctggtgataaaaaaaaatatgaaaatgaagaTTATAGATGACGATTATGTTGATGATAATGAATAGCTATCGTAACTACATTGATGATGGGAGATAATAATTGTTGATAATGATAAAGATCATGCCAGTAGTGATGATAAAGATGTTTAATGCATCATTAAAATCATTGTTAATGTGGTGATGATGaggatgttgatgatgatgctgaagatgGTTGATAATCATTTTGGTgatgaaaattctaaaatatgaTAACGGttatgatggtgatggtgatgataaaGATGTTAATGAAGATTATAGATTATGACTGTTAAGGATGCTAATAGACATCAGTAATTatgttaataatgatgatgctgatgaagACTGTGCTGATGAATGTGACGATAATAATATTGATGAAGATGATCCTACTGATCGTGAcactgatgatgataatgataatgatgatgatgatgttttagaaatgttattttagtacatatatttaagtaaatcaaaATGAAATTGAACCAAATGCTGAAGATGATTATAAAACAACActgaacaaacaaaaacagcaagaaATGATTGTAGTTTTAACAGTGAGTGATCCATACagcctacactgtaaaaacaaagaacagaCAGTCAACACTTTATTGTGTTCttgtaacttttgtaacacCACTTTTGTAAAGTCGTCTCTGTCCGTGTCGTAAGCAGTGCGTTTACTTCTCGAAGATTcagtcattttaacattttaaagagcCTGAAGAGCCCGTTCtgattttacagtgtagtggTAAATTggactatttttatacaaaacaaacataaaactagACATTCCTGTTTAAAACCCTGTATGTAAGCTCACACTTCCCATAACAACAATACTGTTGTAATTAACACCAAGTTTATATGCCCCAAAATTGAACCCTGTGGGATGCAGCACAATTGTGTCTGAACTGGTGTTAATAGCTGAATAATAAAGACGTGGTTCCAGGAGTTAAAGGGGGTTAAATTTCCCAGGGAAATGGAAAagaatgtataaataaatctacTGAGGTATTAATTCATATTAACTTGAGGAGGTCAAGAGGTCACAATGGGCCTAATCACTGTCAGTTTCACCTGCATGCGGTTTGACAATGGAAATGTGTCTGAAATCAGCCAGtggttttaaatattgttttcgCAAACACTGTGTACGATTTGTGAGAGTTTTCTTGTGAGGATTTTTGCTAAACACTTGCTGCTGTTCGCTGCTGCTTTTTCACGTAAAAATGGACTTTGTATGaacctgctgaaaaataaaatgtaaattgtc

Function

symbol description
gpr88 Orthologous to human GPR88 (G protein-coupled receptor 88).

NR:

description
probable G-protein coupled receptor 88

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K08422 GPR88; G protein-coupled receptor 88

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240105.3 True 3639 mRNA 0.44 1 13801468 13805106

Neighbor

gene id symbol gene type direction distance location
cdc14a cdc14a coding upstream 7749 13710046 ~ 13793719 (+)
rtca rtca,LOC107715104,LOC107669846,LOC107653637 coding upstream 100585 13694856 ~ 13700883 (+)
trmt13 trmt13 coding upstream 127903 13666402 ~ 13673565 (+)
LOC103034113 ttc39c,LOC108429509,LOC108270684,LOC107653643,LOC107669847,LOC105898295 coding upstream 189056 13592628 ~ 13612412 (+)
LOC103024927 NA coding upstream 211051 13562232 ~ 13590417 (+)
slc30a7 slc30a7,LOC107588064 coding downstream 56611 13861717 ~ 13891132 (+)
s1pr1 s1pr1,LOC107715096,LOC107592715,LOC107669844 coding downstream 176085 13981191 ~ 13984481 (+)
zbtb37 zbtb37,LOC107592717,LOC107669813,LOC107715094,LOC107588062,LOC107757485 coding downstream 184734 13989840 ~ 13998425 (+)
mrpl54 mrpl54,LOC102788358 coding downstream 501617 14306723 ~ 14309631 (+)
LOC103040508 LOC108414270 coding downstream 507392 14312498 ~ 14333039 (+)
G42220 LOC108429511,LOC100711005,LOC101481666,LOC102215641,LOC107731533,LOC103137085,LOC107715111 non-coding upstream 265442 13530352 ~ 13536026 (+)
G42209 NA non-coding upstream 325632 13472627 ~ 13475836 (+)
G42195 NA non-coding upstream 429663 13369304 ~ 13371805 (+)
G42182 NA non-coding upstream 434608 13366004 ~ 13366860 (+)
G42193 NA non-coding upstream 444238 13356659 ~ 13357230 (+)
G42389 NA non-coding downstream 193814 13998920 ~ 14002697 (+)
G42386 NA non-coding downstream 216537 14021643 ~ 14025396 (+)
G42442 NA non-coding downstream 251492 14056598 ~ 14073336 (+)
G42446 NA non-coding downstream 281803 14086909 ~ 14146357 (+)
G42469 NA non-coding downstream 355299 14160405 ~ 14160711 (+)
LOC103034435 NA other upstream 179426 13617083 ~ 13622042 (+)
LOC103032215 NA other upstream 279211 13509020 ~ 13522257 (+)
G42208 ier5 other upstream 350991 13448592 ~ 13450477 (+)
G42096 LOC108429524,LOC108271269,LOC103369106,LOC106613566,LOC106574586 other upstream 1086440 12705559 ~ 12715028 (+)
G42068 NA other upstream 1168039 12632816 ~ 12633429 (+)
LOC103037142 LOC108429501 other downstream 5727 13810833 ~ 13857361 (+)
eps15l1 eps15l1 other downstream 265317 14070423 ~ 14134546 (+)
G42605 NA other downstream 1089956 14895062 ~ 14899248 (+)
LOC103036127 cunh19orf24 other downstream 2173380 15978486 ~ 15984632 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other downstream 2635825 16440931 ~ 16446287 (+)

Expression


Co-expression Network