slc30a7 (slc30a7,LOC107588064)


Basic Information

Item Value
gene id slc30a7
gene name slc30a7,LOC107588064
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 13861717 ~ 13891132 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240108.3
CCTGtagtgtttatagtgtgtgtgtgtgtgtgtgtgtgtgagggtgtgtgtgtgtgagtgtgtgtctccCAGCGGAGCGGCTCCAGCAGAGATGTTACCGCTATCGATTAAAGACGATGAGTACAAACCTGCCAAATTCAACCTACTCGTCAAACTGTCCGGATGGTTCCGCTCCATTCTCGCCGACAAAACCTCTCggaatttatttttcttcctgTGTCTGAACCTGTCCTTCGCCTTTGTGGAGCTCACTTATGGAATATGGAGTAACAGTTTAGGGCTGATATCAGATTCTTTTCACATGTTCTTCGACTGCACGGCACTTTTGGCAGGCCTTGCAGCATCAGTCATCTCCAGATGGAGGTCTAATGACTCCTTCTCATACGGCTACGTCCGAGCAGAAGTGCTTGCCGGCTTTGTGAACGGCCTCTTTCTCATCTTCACCGCCTTCTTTATCTTCTCAGAGGGAGTGGAGAGGGCATTAGAACCACCTGATGTGCATCATGAGCGGTTGCTGCCTGTGTCTATAGCAGGGCTGCTCGTCAACCTCGTAGGCATCTTTGTATTCCAGCACGGAGGGCACGGACACTCTCACGGTGGAGAAGgtCATGGGCACAGCCATTCTCTGTTCAACGGCAGCGCAGGCCACGGGCACAGTCATGGAGGCCATGGGCACAGCCACGAGACCAAACACGGACACGGACATGACCACGACCACGGGCACGGGCACAGCCACGATCACGGACATGGACACGGAGGACATGGACATTCCCATGAGGAGCCACATTGCCATGatGATCAATTACATACACCAGGCAAAGGCGCCAGCAAACAGATATTGCAAGGAGTTTTTCTGCACATTGTTGCTGATACGTTAGGCAGCATAGGAGTCATCATATCTGCTTTCCTGATGCAGAGATATGACCTGATGATCGCCGATCCTATCTGCTCAATGCTCATCGCTCTTCTCATTGGAGTCAGTGTGGTTCCTCTGCTCAGGGAGTCTATAGGGATCCTCATGCAGCGCACTCCTCCTTCCCTGGACCACGCTCTTCCTGAGTGTTACCAGAGGGTGCAGCAGCTGCAGGGTGTGTACAACCTACAGGAGCCACATTTCTGGACCTTGTGCACGGACGTTTACATCGGTACCCTCAAACTCCTGGTTGCTCCAGACGCAGATTCCCGATGGATCCTCAGTCAGACGCACAACATTTTCACACAGGCGGGAGTACGGCAGCTGTACGTTCAGATTGACGTGGCGGCCATGTAGGAATCGGCGGAACGTGGGTGTCCTGGGACCAAAGCCCTCTGTGCTGCTATTGGGGAAGCTCACCGCCAAAACCCGCCCCAAAaatctcactctcactctcactctctctgcgGGTGTCGGTTGCTTCACCACCACCCCCCTCGGACCAAGCTGGAGCGGCTGCAGTACAGTACACTGACTTTAAACCAGGaaaacagcagcaaaaaaaaaaaaaagttgccaacCACACCACACCAAAATGTGACGGATCCAATGGAAGCAACATCTTATGTTATGAGCATTGCCAACTCTGGGGCCCTTgggttttccttttttttttttttttttttgttctgtatttggtgtggccctctctctctctttatctttctatgatctttttttttctttctgataTGAACCTGTATGTTTTCATGgacatatatatgaaaaaaaaagaagcctgCATCAGTATGTGCCCATCAGTACTCTCTATTTTTGTATGTGGTCTGACCTCTCGCTGCTGCAGTAGCCAGCAGGTGCGGACTTCACTCGCTTATATGCAGTCATGCACTTCAACTCAGCTCTCATCCTGGAACCAAGTGCCTTTTTTATGGTGGATCTCAAAcactctccaaaaaaaaaaaaaaaacaacatctgaaatcatcatcatcatcgtcctGCTCCCGGTCCAAACTGAGATGGGGttcatccttctctctctcttttttgatgATGTGATATCAGTTCTCAAATATCAGCTTGTGTAGACTCCAGGAAACACACCAGCTTTATTCAGCCATAAAATCCTTAAAACCTGATGGCACACGcaaacatcaattaaaaaagttCGTAATTTAATTCCCttcattcatttcttttttaaaactacCCACCTGTGCCACTGGCCAGTACATTTGTGCAATGTAATAAATGATTTTACAATcaaaa

Function

symbol description
slc30a7 Predicted to enable zinc ion transmembrane transporter activity. Predicted to act upstream of or within zinc ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Is expressed in several structures, including blastoderm; notochord; prechordal plate; pronephric duct; and yolk. Orthologous to human SLC30A7 (solute carrier family 30 member 7).

NR:

description
zinc transporter 7 isoform X1

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG:

id description
K14692 SLC30A5_7, ZNT5_7, MTP, MSC2; solute carrier family 30 (zinc transporter), member 5/7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240108.3 True 2201 mRNA 0.48 11 13861717 13891132

Neighbor

gene id symbol gene type direction distance location
gpr88 gpr88 coding upstream 56611 13801468 ~ 13805106 (+)
cdc14a cdc14a coding upstream 67998 13710046 ~ 13793719 (+)
rtca rtca,LOC107715104,LOC107669846,LOC107653637 coding upstream 160834 13694856 ~ 13700883 (+)
trmt13 trmt13 coding upstream 188152 13666402 ~ 13673565 (+)
LOC103034113 ttc39c,LOC108429509,LOC108270684,LOC107653643,LOC107669847,LOC105898295 coding upstream 249305 13592628 ~ 13612412 (+)
s1pr1 s1pr1,LOC107715096,LOC107592715,LOC107669844 coding downstream 90059 13981191 ~ 13984481 (+)
zbtb37 zbtb37,LOC107592717,LOC107669813,LOC107715094,LOC107588062,LOC107757485 coding downstream 98708 13989840 ~ 13998425 (+)
mrpl54 mrpl54,LOC102788358 coding downstream 415591 14306723 ~ 14309631 (+)
LOC103040508 LOC108414270 coding downstream 421366 14312498 ~ 14333039 (+)
LOC103042131 LOC108424984 coding downstream 442963 14334095 ~ 14345180 (+)
G42220 LOC108429511,LOC100711005,LOC101481666,LOC102215641,LOC107731533,LOC103137085,LOC107715111 non-coding upstream 325691 13530352 ~ 13536026 (+)
G42209 NA non-coding upstream 385881 13472627 ~ 13475836 (+)
G42195 NA non-coding upstream 489912 13369304 ~ 13371805 (+)
G42182 NA non-coding upstream 494857 13366004 ~ 13366860 (+)
G42193 NA non-coding upstream 504487 13356659 ~ 13357230 (+)
G42389 NA non-coding downstream 107788 13998920 ~ 14002697 (+)
G42386 NA non-coding downstream 130511 14021643 ~ 14025396 (+)
G42442 NA non-coding downstream 165466 14056598 ~ 14073336 (+)
G42446 NA non-coding downstream 195777 14086909 ~ 14146357 (+)
G42469 NA non-coding downstream 269273 14160405 ~ 14160711 (+)
LOC103037142 LOC108429501 other upstream 4356 13810833 ~ 13857361 (+)
LOC103034435 NA other upstream 239675 13617083 ~ 13622042 (+)
LOC103032215 NA other upstream 339460 13509020 ~ 13522257 (+)
G42208 ier5 other upstream 411240 13448592 ~ 13450477 (+)
G42096 LOC108429524,LOC108271269,LOC103369106,LOC106613566,LOC106574586 other upstream 1146689 12705559 ~ 12715028 (+)
eps15l1 eps15l1 other downstream 179291 14070423 ~ 14134546 (+)
G42605 NA other downstream 1003930 14895062 ~ 14899248 (+)
LOC103036127 cunh19orf24 other downstream 2087354 15978486 ~ 15984632 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other downstream 2549799 16440931 ~ 16446287 (+)
LOC103044285 NA other downstream 2925469 16816601 ~ 16819251 (+)

Expression


Co-expression Network