s1pr1 (s1pr1,LOC107715096,LOC107592715,LOC107669844)


Basic Information

Item Value
gene id s1pr1
gene name s1pr1,LOC107715096,LOC107592715,LOC107669844
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 13981191 ~ 13984481 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240109.3
GAGCTCTGGGTCAGTTCTTCAGTTAGAAGCtgagtggagtgtgtggaggagCTGCTGCCTCTGTGGAGAACTGAGTTGAAGGGCTTTTTTTTCCTCGATAAGTGAAGTTTTTCCACAATGCCGTCCCTGGACTTGCTTCCAATATTCATCCAAACTGAGGATTTTTACCTTACTTAGGAGACTGTACATGACATCACACCAACAGTGAATTGGATACTAATCTGCCCTGGTCCACCAGCACCACCCAGTGGATTGTAAGGTGGACTGCACAGGCTGTGGATTATTTGTGGATAAAGCCCTCAGCTGGATTGGGACCATGGCTGACTCAATGTACTCAGACTTGATAGCCAGGCACTACAACTTCACGGGGAAGTTACGTAAAACAGACAGGGATCCCGGTCTTAAAGCCGACTCTGTGGTGTTCATAATCGTGTGCTGCTTCATCATCATGGAGAACGTGCTGGTTCTCCTCACCATCTGGAGAACCAAGAAGTTTCACAAGCCTATGTACTACTTTATTGGGAATTTGGCCCTGTCAGACTTGCTGGCAGGCGTGGTATACACTGCCAACATCTTGCTCTCAGGACCCAACACTTACAGACTGAGCCCCACACAGTGGTTCTTCAGGGAGGGCAGCATGTTTGTGGCCTTGGCTGCTTCGGTTTTTAGCCTCCTGGCTATCGCAATCGAGCGGCACCTCACCATGCTAAAGATGAAACTCCACAACAATGGCAACACCTGCCGGGTCTTCATGCTGATCAGCACCGTGTGGTTCATCGCTGCTATACTGGGCGGCCTGCCCGTCATGGGCTGGAACTGCATCCAGAGCATGGAGAACTGCTCAACGGTGCTGCCACTCTACCACAAGACCTACATCCTGTTCTGCACTACCGTCTTCAGCGTCATCCTCATGGCCATCGTGGTGCTCTATGCCCGCATCTACACCCTGGTGCGCACTCGCAGCCGCAAGCTGGTCTTCCGCAAGGTCTCCAATGGCCGTGGTGGCAATAAGAGCTCTGAGAAGTCCATGGCCCTGCTCAAGACCGTCATCATCGTGCTGAGCTGCTTTATCGCCTGTTGGGCGCCACTCTTCATTCTCCTGCTGCTGGACGTGGCTTGCGAGATCGGCGCCTGCCGGATCCTCTACAAGGCCGAGTGGTTCCTGGCCCTGGCCGTACTCAACTCGGCCATGAACCCGCTCATCTACACGCTGACCAGCAACGAGATGCGCCGTGCCTTCATCAAAATGCTGCTGTGCAGCAAAGTGTGCAGCCAGCCTTCAGGCAAGTTCTCCAGGCCCATCATGGGGGCCGAGTTCAGCCGGAGCAAGTCAGACAACTCCTCCCATCCCAACAAGGACGAACCAGAATACTCGCCCAGGGAAACCATTGTGTCTTCGGGGAACATCACCTCTTCTTCTTAAAATGGGGGTCATCCAGCTCTGGTTTTGGAGGGCCTTGGAGGTTGGGTTCACATTAGAGGCTCAATATTTGTGGTCTGATCTGATTTATCTGGATTGTTGGATAAAATACCAATTTGTCATGAGTTCGCCTATGGATCAGGTTTTGTATTCAAGTTAAAGCCACTGCTGccactgatgttttttctgaCATCCAACAAATGGCTAAGAACTGAACCTCAGTGATGTCGGATCAAGCAAAATATCTCTAATAAAGTTGTAGAACTTGTAAAAGCCCTTTTATAGaagccaatgttttttttataaaattatgaaaTGATTTCATAATAATTTATGAAATTTACAAAAATGGAATTTCTGACAGCAACAATCAGAATCTAAGACCTGAGTAAGATTTTGTGTTCACAtttaggtgaaaaaaaaaaatagaatcaaTCCATTTTCAAGCTTATAATGTGAACGTAATCcagaacagtttttttaattacttcagTTCCCACTAAAGCTAAATCATGACCCTCCAGAACCAAAGCTGGACACCGTCTTAAAGGGACTCTGTACAGTACTCCCCCTCCCCTATGTAGTCtatgaatgtgtatgtgtgtggaaggtgtgtgtgtaaatctgtCTGttagtgtgtacagtgtgtacagtatgtgtgtgtaaatgtgtggtttgttttttagtgttACAAGTGCTTGAACTATTTCTAtgacttttttaattttgttgaacGGCATGAAAATGCCATCTGAAAAAGGGCTGAACTGGGAGAAACAGAGACTGAATGAAGAAATCCAGAAGCCCTTTACTTGTGAACTGGAAAGTGCTGCATATTTACAagactctttttttctttctttttttttcgccCACTTTTGAAGGACGTCCAGCACTAAAAGTCCGTCTTCCTCCGATGCCAGAGCGGAACGTAGGGAAGCACTTAACAAACTGAGCTGTGTAAACTTGATTAATCAGTATTACCCGTCGTCCTGTTCTTCATGTCCGCGGAAACGCGAGCATGTTCCGCTGTGAGGAACATTTAGATTAGCACTTGTTGTAAAAGTGCTCTTTGAGAGCCATCAATAGGCCTTACTGACTCTTCTTATGGATTGATTAAAGTGATTAAAAGTGACATTAGTTTGTTTTGCTCATTTGTACCATTCCatggaaattaaattaaagaattacagtaaaaaaa

Function

symbol description
s1pr1 Enables lysophosphatidic acid receptor activity. Involved in G protein-coupled receptor signaling pathway. Acts upstream of or within several processes, including ameboidal-type cell migration; circulatory system development; and negative regulation of angiogenesis. Predicted to be intrinsic component of plasma membrane. Predicted to be active in cytoplasm and plasma membrane. Is expressed in several structures, including cardiovascular system; fin bud; nervous system; neural tube; and pleuroperitoneal region. Orthologous to human S1PR1 (sphingosine-1-phosphate receptor 1).

NR:

description
PREDICTED: sphingosine 1-phosphate receptor 1

GO:

id name namespace
GO:0003376 sphingosine-1-phosphate receptor signaling pathway biological_process
GO:0030335 positive regulation of cell migration biological_process
GO:0001944 vasculature development biological_process
GO:0008078 mesodermal cell migration biological_process
GO:0031226 intrinsic component of plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038036 sphingosine-1-phosphate receptor activity molecular_function

KEGG:

id description
K04288 S1PR1, EDG1, CD363; sphingosine 1-phosphate receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240109.3 True 2621 mRNA 0.46 2 13981191 13984481

Neighbor

gene id symbol gene type direction distance location
slc30a7 slc30a7,LOC107588064 coding upstream 90059 13861717 ~ 13891132 (+)
gpr88 gpr88 coding upstream 176085 13801468 ~ 13805106 (+)
cdc14a cdc14a coding upstream 187472 13710046 ~ 13793719 (+)
rtca rtca,LOC107715104,LOC107669846,LOC107653637 coding upstream 280308 13694856 ~ 13700883 (+)
trmt13 trmt13 coding upstream 307626 13666402 ~ 13673565 (+)
zbtb37 zbtb37,LOC107592717,LOC107669813,LOC107715094,LOC107588062,LOC107757485 coding downstream 5359 13989840 ~ 13998425 (+)
mrpl54 mrpl54,LOC102788358 coding downstream 322242 14306723 ~ 14309631 (+)
LOC103040508 LOC108414270 coding downstream 328017 14312498 ~ 14333039 (+)
LOC103042131 LOC108424984 coding downstream 349614 14334095 ~ 14345180 (+)
LOC103041829 NA coding downstream 374728 14359209 ~ 14412035 (+)
G42220 LOC108429511,LOC100711005,LOC101481666,LOC102215641,LOC107731533,LOC103137085,LOC107715111 non-coding upstream 445165 13530352 ~ 13536026 (+)
G42209 NA non-coding upstream 505355 13472627 ~ 13475836 (+)
G42195 NA non-coding upstream 609386 13369304 ~ 13371805 (+)
G42182 NA non-coding upstream 614331 13366004 ~ 13366860 (+)
G42193 NA non-coding upstream 623961 13356659 ~ 13357230 (+)
G42389 NA non-coding downstream 14439 13998920 ~ 14002697 (+)
G42386 NA non-coding downstream 37162 14021643 ~ 14025396 (+)
G42442 NA non-coding downstream 72117 14056598 ~ 14073336 (+)
G42446 NA non-coding downstream 102428 14086909 ~ 14146357 (+)
G42469 NA non-coding downstream 175924 14160405 ~ 14160711 (+)
LOC103037142 LOC108429501 other upstream 123830 13810833 ~ 13857361 (+)
LOC103034435 NA other upstream 359149 13617083 ~ 13622042 (+)
LOC103032215 NA other upstream 458934 13509020 ~ 13522257 (+)
G42208 ier5 other upstream 530714 13448592 ~ 13450477 (+)
G42096 LOC108429524,LOC108271269,LOC103369106,LOC106613566,LOC106574586 other upstream 1266163 12705559 ~ 12715028 (+)
eps15l1 eps15l1 other downstream 85942 14070423 ~ 14134546 (+)
G42605 NA other downstream 910581 14895062 ~ 14899248 (+)
LOC103036127 cunh19orf24 other downstream 1994005 15978486 ~ 15984632 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other downstream 2456450 16440931 ~ 16446287 (+)
LOC103044285 NA other downstream 2832120 16816601 ~ 16819251 (+)

Expression


Co-expression Network