G47145


Basic Information

Item Value
gene id G47145
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 10485358 ~ 10511806 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU53607
TCAAAGACTACAGATTTTAGCCTAGGATTATAGGAATCTTTTAGGATTCTCAAAATTTGTCTCAGACGACCAAATCATGGCCAAAATTGCACAGTGTGAACCAGCCTTATCTCACCTTCCCCGGACTCCATTTCCCATCATCCCTCCTGTCGCTCACCTGCTCACACTCAGCAGTCACCTGGACCTGATCTCCATCACCTCATCAGCACAGCAGTATTTAAGCACACATTTCACCACAGCACTTGGTCTGGTCTCGTTCGTTCGTTGGTACATGGACTCCCTTACCTGTCAGCACTTACTTGTATGTTCCAGTGCTCCTTCGTCTCTCCCACTCCTTCGTGTCTCCAGCATCTCCTGTTCTCCAGTGTCTTCATTCCCCAGATTCCTTCCACACTCCACCATCTCCACCTAAGTGTGTGCACGGCTGCTCAGTTCTACGATCTCCTTCATCCATCTGCAAGTCAAAGAACTGTCAGTATAACCATTCAGTATTACCATCCTTCTCATTCTACATTACTCACCTGCTTGTTTGTCATACCTGCCTCGACCAATAAAGCTTCATATTCACTTTGACATTGTTGTGAGTCTGTGTTCCATAAAAGTGCCCAGCATAAGGAAACTTGTATTTACGATAGTTCCGATAGCACGTGAAGGCAGCATAACTCCTGACAAATTAAAGACTGTTGCGCCTCTTTTGCTTTTTTCAGTTTTCTCGCTTTTAAAATGTTTTAGATCGCCTTGTCAAGTTCAACTTCTCGAGTTAGGACAACATTTGGACATTTGGACCCTTTCTGCCTTTTCACTAACCGGATGCGCAGGATGGAGTTCCCATTGACAAGCATTATACGACTGACA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU53607 True 855 TUCP 0.45 4 10485358 10511806

Neighbor

gene id symbol gene type direction distance location
CI01000006_10363884_10364804 NA coding upstream 119787 10363796 ~ 10365571 (+)
CI01000006_10177090_10192651 NA coding upstream 291839 10177090 ~ 10193519 (+)
CI01000006_09998680_10008491 LHX5 coding upstream 476310 9998680 ~ 10009048 (+)
CI01000006_09918611_09921465 MZT2B coding upstream 563565 9918611 ~ 9921793 (+)
CI01000006_09910027_09913958 NA coding upstream 571254 9909370 ~ 9914104 (+)
CI01000006_10518326_10566504 SFSWAP coding downstream 6520 10518326 ~ 10566504 (+)
CI01000006_10574971_10578629 NA coding downstream 62802 10574608 ~ 10578964 (+)
CI01000006_10593624_10605226 NA coding downstream 81438 10593244 ~ 10606273 (+)
CI01000006_10707037_10743311 MMP17, MMP17A coding downstream 195138 10706944 ~ 10743594 (+)
CI01000006_10747943_10768998 ULK1B coding downstream 236137 10747943 ~ 10769038 (+)
G47140 NA non-coding upstream 2193 10462462 ~ 10483165 (+)
G47106 NA non-coding upstream 4115 10403274 ~ 10481243 (+)
G47108 NA non-coding upstream 22934 10408876 ~ 10462424 (+)
G47102 NA non-coding upstream 124991 10343313 ~ 10360367 (+)
G47079 NA non-coding upstream 181172 10303952 ~ 10304186 (+)
G47217 NA non-coding downstream 5905 10517711 ~ 10517922 (+)
G47218 NA non-coding downstream 54848 10566654 ~ 10567299 (+)
G47220 NA non-coding downstream 103519 10615325 ~ 10616018 (+)
G47213 NA non-coding downstream 153160 10664966 ~ 10672592 (+)
G47175 NA non-coding downstream 289780 10801586 ~ 10805053 (+)
G46652 NA other upstream 326107 10156579 ~ 10159251 (+)
G45416 NA other upstream 1650661 8818814 ~ 8834697 (+)
G45355 NA other upstream 2272970 8209555 ~ 8212388 (+)
CI01000006_08198328_08199463 NA other upstream 2285213 8197881 ~ 8200145 (+)
G45336 NA other upstream 2463407 8019342 ~ 8021951 (+)
G47159 NA other downstream 904423 11416229 ~ 11521703 (+)
G47318 NA other downstream 1112461 11624267 ~ 11638252 (+)
G48094 NA other downstream 1765814 12277620 ~ 12279541 (+)
G48081 NA other downstream 1865200 12377006 ~ 12384827 (+)

Expression


Co-expression Network