mrpl54 (mrpl54,LOC102788358)


Basic Information

Item Value
gene id mrpl54
gene name mrpl54,LOC102788358
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 14306723 ~ 14309631 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240118.3
CGCATGCTCAGTGCTGGGCGGAAGCTGCTGTACAGCATGGTGGCAGGCTGCTGTATGAACCATGGCGCTGAGGAGTTTAACGAATCCTGTAAAAGCTGCTCTAaatctctgtgtttttaattcaCACGCAGAAACCTGTGCTCTAGCGGGTCTGAGAGGTTCAGTGGGTGTTCGCGGATACGCTAAGAAAGTCGCAGCTGCTAAAGGGAAGGGAAAAGGCATGATGAAGGATGTGCAGAAGGGTCCAGAGGTGTGCAAAGATCCAGAGAAACTCGTATCACATGCTGTAGGAGTAAACATCTTCAAACAGGGTGAAGATCCGCCAATTAAACCCAAAGATGAATATCCAGAATGGCTGTTTCAGCTGAACCTTGGCCCTGCCAAAAAACTGGAAGAAATGGATTCAGAGAGTCACGAATACTGGAAACGTCTACGAAAGGAGAACATATGGCGGTTTAACAGATTACACAAGGGTAAAAAGTTCTGAGAGACAAAGAGCTACACGCCCTGATAAGACCAGGATTTAAGTGACTCTTGGTGGAAAGGAACTGGCTGATTTTAGGAATTTGGTTCCTCGTTGAGCGTTCCACTACTTTCCCCAAAACATGTCTGGATTTCAGCTTCCTGTAAATCTGCAATGTCAAGACCACAAGTACCTGTGATAGCGTGCAGTATTTGGTAGTGCACTGGTTGTATTTCACAATGGTGGATTTTTCACTAAGCTGTATAAACTTGGACAGAAGTGGAAGCTTGTCCAGCAGGAACTTTAGTTGTCCTTTATTGGACAGGCCTGGACTTTTGAACTGTTTATGAAGCTCAGTTACACAAGCCAGGATTGATCAACATTTgctctcttaaaaataaatattcctAAAAAGA
>XM_007240119.3
TCAGTGCTGGGCGGAAGCTGCTGTACAGCATGGTGGCAGGCTGCTGTATGAACCATGGCGCTGAGGAGTTTAACGAATCCTGTAAAAGCTGCTCTAaatctctgtgtttttaattcaCACGCAGAAACCTGTGCTCTAGCGGGTCTGAGAGGTTCAGTGGGTGTTCGCGGATACGCTAAGAAAGTCGCTGCTAAAGGGAAGGGAAAAGGCATGATGAAGGATGTGCAGAAGGGTCCAGAGGTGTGCAAAGATCCAGAGAAACTCGTATCACATGCTGTAGGAGTAAACATCTTCAAACAGGGTGAAGATCCGCCAATTAAACCCAAAGATGAATATCCAGAATGGCTGTTTCAGCTGAACCTTGGCCCTGCCAAAAAACTGGAAGAAATGGATTCAGAGAGTCACGAATACTGGAAACGTCTACGAAAGGAGAACATATGGCGGTTTAACAGATTACACAAGGGTAAAAAGTTCTGAGAGACAAAGAGCTACACGCCCTGATAAGACCAGGATTTAAGTGACTCTTGGTGGAAAGGAACTGGCTGATTTTAGGAATTTGGTTCCTCGTTGAGCGTTCCACTACTTTCCCCAAAACATGTCTGGATTTCAGCTTCCTGTAAATCTGCAATGTCAAGACCACAAGTACCTGTGATAGCGTGCAGTATTTGGTAGTGCACTGGTTGTATTTCACAATGGTGGATTTTTCACTAAGCTGTATAAACTTGGACAGAAGTGGAAGCTTGTCCAGCAGGAACTTTAGTTGTCCTTTATTGGACAGGCCTGGACTTTTGAACTGTTTATGAAGCTCAGTTACACAAGCCAGGATTGATCAACATTTgctctcttaaaaataaatattcctAAAAAGA

Function

symbol description
mrpl54 Predicted to be a structural constituent of ribosome. Predicted to be located in mitochondrion and ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human MRPL54 (mitochondrial ribosomal protein L54).

NR:

description
39S ribosomal protein L54, mitochondrial-like

GO: NA

KEGG:

id description
K17435 MRPL54; large subunit ribosomal protein L54

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240118.3 True 879 mRNA 0.44 3 14306723 14309631
XM_007240119.3 False 869 mRNA 0.44 3 14306730 14309631

Neighbor

gene id symbol gene type direction distance location
zbtb37 zbtb37,LOC107592717,LOC107669813,LOC107715094,LOC107588062,LOC107757485 coding upstream 308298 13989840 ~ 13998425 (+)
s1pr1 s1pr1,LOC107715096,LOC107592715,LOC107669844 coding upstream 322242 13981191 ~ 13984481 (+)
slc30a7 slc30a7,LOC107588064 coding upstream 415591 13861717 ~ 13891132 (+)
gpr88 gpr88 coding upstream 501617 13801468 ~ 13805106 (+)
cdc14a cdc14a coding upstream 513004 13710046 ~ 13793719 (+)
LOC103040508 LOC108414270 coding downstream 2867 14312498 ~ 14333039 (+)
LOC103042131 LOC108424984 coding downstream 24464 14334095 ~ 14345180 (+)
LOC103041829 NA coding downstream 49578 14359209 ~ 14412035 (+)
bsg NA coding downstream 153019 14462650 ~ 14480454 (+)
LOC103044493 hcn2,LOC108429559,LOC107569045,LOC107569931,LOC107719599,LOC107655221 coding downstream 174310 14483941 ~ 14534170 (+)
G42469 NA non-coding upstream 146012 14160405 ~ 14160711 (+)
G42446 NA non-coding upstream 160366 14086909 ~ 14146357 (+)
G42442 NA non-coding upstream 233387 14056598 ~ 14073336 (+)
G42386 NA non-coding upstream 281327 14021643 ~ 14025396 (+)
G42389 NA non-coding upstream 304026 13998920 ~ 14002697 (+)
G42527 NA non-coding downstream 67847 14377478 ~ 14378030 (+)
G42521 NA non-coding downstream 102658 14412289 ~ 14413746 (+)
LOC111192557 NA non-coding downstream 228690 14538321 ~ 14560369 (+)
G42564 NA non-coding downstream 318226 14627857 ~ 14669283 (+)
G42571 LOC103031381 non-coding downstream 375668 14685299 ~ 14688753 (+)
eps15l1 eps15l1 other upstream 172177 14070423 ~ 14134546 (+)
LOC103037142 LOC108429501 other upstream 449362 13810833 ~ 13857361 (+)
LOC103034435 NA other upstream 684681 13617083 ~ 13622042 (+)
LOC103032215 NA other upstream 784466 13509020 ~ 13522257 (+)
G42208 ier5 other upstream 856246 13448592 ~ 13450477 (+)
G42605 NA other downstream 585431 14895062 ~ 14899248 (+)
LOC103036127 cunh19orf24 other downstream 1668855 15978486 ~ 15984632 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other downstream 2131300 16440931 ~ 16446287 (+)
LOC103044285 NA other downstream 2506970 16816601 ~ 16819251 (+)
LOC111192574 NA other downstream 2638749 16948380 ~ 16950360 (+)

Expression


Co-expression Network