LOC103044493 (hcn2,LOC108429559,LOC107569045,LOC107569931,LOC107719599,LOC107655221)


Basic Information

Item Value
gene id LOC103044493
gene name hcn2,LOC108429559,LOC107569045,LOC107569931,LOC107719599,LOC107655221
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 14483941 ~ 14534170 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240131.3
ATGGATGAAGGTGAGGATGGTGAAGAAGACCACGGGGGGATGAAGAGTGTAACAGGAGGGGGGGTGGCGGCGAGCAGGACCCCAAGTAGCGTCGAGCTCGAGCAAGGAAACGTCGAGTCTCGCGCGGCGGCGGCGGACGCGCCCGTTTCCTCTGGTGTGTCGCGCGGTAAAGCTGAGCGGGACTCGGGCGGGGAGGAGGCCGGCATGAGGCGCGTGCTGAACGGAGACTGCCGGAGAGACCCCCCCTCCTCCGTCTCCTCCACcacacaacagcagcagcagccgccgCACGCGCCTGACCACGACCTCCACGCGCACCAGGACATGGATGGCGCCTCTGAACTCGCGCCCAACACCACCCCCTCCACCCCCGCGAGCGCTCCGGACCGGAGGGACCCGCGCGTGTCCTTCTCCACCGCGCCCGGACCCACCAAGACGCCCGAGGACGCGCAGCTCGCGGGGGACGATGGAGAGGCGCGCGACGCTCAGACCTTCATGCAGCGACAGTTTAGCTCGATGCTGCAACCAGGGGTCAACAAGTTCTCACTGCGTATGTTCGGCAGCCAGAAGGCGGTGGAGAAGGAGCAGGAGCGCGTGAAGAGCGCGGGAAACTGGATCATCCACCCATACAGCGACTTCAGGTTCTACTGGGACTTCACAATGCTAATGTTTATGGTGGGCAATCTAATCATCATTCCTGTGGGCATCACCTTCTTCAAAGACGAGACCACCACGCCCTGGATTATCTTCAACGTGGTGTCGGACACATTCTTCCTCATGGACCTGGTGCTCAACTTCCGCACGGGCATTGTCTATGAGGACAATACAGAGATCATTCTGGATCCAAAACAGATCAAAAAGAAGTACCTGCGGACCTGGTTTGTGGTGGACTTCATCTCATCCATCCCAGTGGATTATATTTTTCTCATTGTGGAGAAAGGGATCGACTCGGAGGTTTACAAGACGGCGAGGGCTCTGCGCATCGTCCGCTTCACCAAAATCCTCAGTCTGCTCAGACTTCTCAGACTGTCCAGACTGATCCGCTACATCCACCAGTGGGAGGAGATCTTTCATATGACGTATGACCTGGCCAGTGCGGTGATGAGGATCATTAACCTGATCGggatgatgctgctgctgtgtcACTGGGACGGCTGCCTGCAGTTCCTGGTGCCCATGCTGCAGGACTTCCCCTCCGACTGCTGGGTGTCCCTCAACAAGATGGTGAATGACTCGTGGAGTGAGTTGTACTCCTTTGCCCTGTTCAAGGCCATGAGCCATATGCTGTGTATCGGGTACGGACGCCAGGCCCCGGAGAGCATGTCTGATATCTGGCTCACTATGCTCAGCATGATCGTAGGAGCCACCTGTTACGCCATGTTCATCGGCCATGCCACCGCCCTCATCCAATCCCTGGACTCCTCACGCCGCCAGTACCAGGAAAAGTATAAACAAGTGGAACAGTACATGTCCTTTCACAAACTTCCAGCAGACTTTCGGCAGAAGATTCACGATTACTACGAGCACAGGTATCAGGGCAAGATGTTTGATGAGGAGAGTATTTTGGAGGAGCTGAACGAGCCACTGAGAGAGGAAATTGTCAACTTCAACTGTCGCAAGTTGGTCGCCTCCATGCCACTGTTCGCAAATGCTGATCCCAACTTTGTGACGGCCATGTTGACAAAACTTCGATTTGAGGTCTTCCAGCCACTGGATTACATCATTCGCGAGGGAACCATTGGCAAGAAGATGTACTTCATCCAGCATGGTGTTGTGAGCGTCCTTACCAAAGGCAGCATAGGCATGAAGCTATCTGATGGATCTTACTTTGgagAGATCTGCCTGTTGACCCGTGGGAGGCGTACAGCCAGCGTTCGAGCAGACACCTACTGTCGCCTCTACTCACTGTCTGTGGACAACTTCAATGAAGTCTTGGAGGAGTATCCTATGATGAGGAGAGCCTTTGAGACGGTGGCCATTGACAGACTGGACCGGTTAGGCAAGAAGAACTCCATCCTGATGCACAAAGTCCAGCACGACCTAAACTCTGGAGTCTTCAACAACCACGAGAACGAGTTGATTCAGGAGATTGTAAAGTACGACAGAGAGATGGTAAAGCTGGTGGACCTCCAGAGGCCCCGCGCCATGTCCACTACTCTCTCCACCCACGGGACCATGTTCCCTTCTTCCAGCCAGCCTCCTACCAGCTCTGCCATTGCCTCCCTCCAGCAGGCTGTGGCCATGAACTTCTGCCCCCAGATGGCCAATCCTCTGCAAGGTCACAGCGCTCTCCAGTCCCCTCGTATGGTGCGACGCTTCCAGGTAGTCCAGAGTCTCTCCAGTCCAGGGACCCAGCAGACCCCTCCAGGCTCCCAGTTTACTGCTGGAGCTCTCGTTTCCGCCCTTGCTGCTGGCACGCCCATTCAGAGCCCCTTGGCAACAGCCGGACGAACATTCCAGTACAGTTCCAGCCCCATGGGTGCCCTCTCAGGGTCCCAGCTGTCTTTGGTGCAGCAACATGTCCCCAGCCCTACACATCGAGCAGTCGGGCCCAGGAGCACAATAACGCAGGACGCCCGGGCCCTCTCAGCATCCCAACCGTCTCTGCCCCACGACGGGGTGCAGCCGGCCGCCCCCAGTCCGCCCCAGTCCACCAGAGTATCTTCCACTTCTATCGGACCTCCTCAGAACCTCTCGGGACCCTCTGGCTTTCGAGCCGCCATCCCTCCCAGAATGACTCTCCCACATCAGATGTCAGTAGGAGCGTTCCCACCCGCTTCCCTTCCCCAAATGAGGCCGAGCCACGGCCCGGGACTGCCCAAGAAGGATTCAGTAATCAGCCTTCCGGACACAGACTTTCACATCAGATCTAGATTATCTTCCAATTTGTGACCTTGTGACAGAGTTGGGGGGTGCTGGGTATTCTTCCATTAGTAAGTACGTTTCCCCACTCCTTGCCACTCTTTGGGTCTTAGTCTAAGAATGTAAACAGTGTGACATAAGTGACAAAAAGGGGCGGAGTGACTAGAACTACCCAACTTGACAAATATTAACCATAAAAGTCTGTAAAACGAAAGATTCCAACATCACTTGATATTTCTGTTCTACCCACGAGCATAAACATCAACGTAGCTTCCTCCCACACAGTTTGCCTCTCTTTGTAATCCTTATTTATTGTGGTTGTACTCAAACtttgtataaaagaaaaaaaactgctccCTCTCTTCTACTCTAGTCCAAATGATGCAATGTAAACTGGGCTGGAACGCAGGGGGGATAAAAGTAACGTGCTTCTATTTACAATACAGGAGCGAGAACTGTTTGCGAAAGTGTTTAATGATGCAATGTAGCGGGAGTTTTTTGTGAGTTTAACAGGGTTGGTTAGACAACAGCCTTTTCAGCAATATTAAAACTGCTATCCACCTTATTTTCCATTACAACCAtctttgtttactttgtgttaAAACTTCCGGTGAGACAAAGGATCCGTTGATGTAGATTACATccacagcaataataataatacagaatgAGTAAATATAACTGGATATAGCATATAACAGTTAGAGGATGTCACAGTGATTGGATGATTTTTTCTTGAACAATAGTATTACGaacacagcacaaaaaaaattgcGTTGTTGTGGgaaaccattttatttatttattagtgtatGTAGTGACGCAACAAAATTTATTTGTCTTGCCAAAACCCTAAGCCAAACAAAACACATTTGCAagaggttttcatttattttgacacCTTTTCAccattgcaaacaaaaaaaaaaaattggataatttattttagatttttttccccaattcgGAAGGCCACCGACTTATTATGAAGAAAAGGCAAATGCAAAACTACAATTctaaaatattactattaaataACACTTAACATTTTGAACACCAGCAAAGcacaatacagtgtttttatttcatatattttgcaATGCTGGACCACCGCTGCAAAACGATTGCCAACAAACATCATAAACTGCCAATTACTAAAACGTTGAATAggggttttaatttaaaacaaggGATGCTTCACACTGCCATGTAGCTTTACGCTAATGCTACATTCAAGTGCCTAGCCACATTGGAAAGCGTATATATGTCACAACTCTCTTAGATCATGCTGCATTAAAAGGACTTCAGGATCCCACTGCTGTGCCACCACTGCTGAGAGAAATCCTAAATGAATCattgttcagtataaattaCTGTGCTTTTTCACTTATTCGGCTAAAAATACTGTGGGTATAAGTATAAGCTATCTGGTGCTCCGCTATCTTAGTTTGCTATGCTCTAAACCTCTCCAAATGATGTTAAATAGCCTTTATAACCAGTGTTCACAGCAGTAAGCACTTCAAACTCCATTTACTCTGAATACAATGTGACCATTGATACAAAATGCCCGGAAATTCTAACACAAAGTGGGCGTGGCAGAGAATAAGGTGGATAGAACAGGGGCTTGGGGAGGGGGGTGATAATACACAGATAGCACACGGTTCTAGGTCAAATCCAGAAGAGTTACTGGTCAGTTCTAGAAATGGCCCAGCTGTAGAACCCACATTTCGGTTCTGTCTGGCATTTGAACTGTAATTTATCGCTGCTGTCTGTCTGGGCAGGATTAAAGTGGTAAGTGTGGGCTGAGCTGGGCCGGGACTCGTTTGCTATCTGGGTAGCGTGTTTGACAGGTAATCGATCTGGAAGCCGACACATTCTCACTGAGGGGAACGGctttgattttttcttttttccagacCAAAGTTGGGCCAAAAAtaatgttgtgttgttttttttaaaatgaaacaaatgaaatgaaacaaataCAACTTCATTTGCCTTGATTTT

Function

symbol description
hcn2 Enables cation channel activity and identical protein binding activity. Involved in inorganic cation import across plasma membrane; regulation of membrane potential; and response to purine-containing compound. Located in plasma membrane. Is integral component of plasma membrane. Part of HCN channel complex.

NR:

description
PREDICTED: potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2-like

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0051049 regulation of transport biological_process
GO:0006813 potassium ion transport biological_process
GO:0016020 membrane cellular_component
GO:0005216 ion channel activity molecular_function

KEGG:

id description
K04955 HCN2; hyperpolarization activated cyclic nucleotide-gated potassium channel 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240131.3 True 4869 mRNA 0.49 8 14483941 14534170

Neighbor

gene id symbol gene type direction distance location
bsg NA coding upstream 3487 14462650 ~ 14480454 (+)
LOC103041829 NA coding upstream 71906 14359209 ~ 14412035 (+)
LOC103042131 LOC108424984 coding upstream 138761 14334095 ~ 14345180 (+)
LOC103040508 LOC108414270 coding upstream 150902 14312498 ~ 14333039 (+)
mrpl54 mrpl54,LOC102788358 coding upstream 174310 14306723 ~ 14309631 (+)
LOC103026177 fgf22,LOC106613753,LOC106584266 coding downstream 88008 14622178 ~ 14660025 (+)
LOC103026778 NA coding downstream 177204 14711374 ~ 14725957 (+)
LOC103045821 plak,LOC108438667,LOC108270763,LOC107562072,LOC107680531,LOC107753847 coding downstream 300054 14834224 ~ 14868739 (+)
LOC103022023 NA coding downstream 438091 14972261 ~ 14994616 (+)
LOC103023991 rbbp7,rbb4l,LOC103023991,LOC108438657,LOC105893332 coding downstream 511104 15045274 ~ 15051775 (+)
G42521 NA non-coding upstream 70195 14412289 ~ 14413746 (+)
G42527 NA non-coding upstream 105911 14377478 ~ 14378030 (+)
G42496 fam32a,LOC107757479 non-coding upstream 177000 14303418 ~ 14306941 (+)
G42469 NA non-coding upstream 323230 14160405 ~ 14160711 (+)
G42446 NA non-coding upstream 337584 14086909 ~ 14146357 (+)
LOC111192557 NA non-coding downstream 4151 14538321 ~ 14560369 (+)
G42564 NA non-coding downstream 93687 14627857 ~ 14669283 (+)
G42571 LOC103031381 non-coding downstream 151129 14685299 ~ 14688753 (+)
G42583 NA non-coding downstream 194290 14728460 ~ 14733285 (+)
G42579 NA non-coding downstream 207104 14741274 ~ 14749183 (+)
eps15l1 eps15l1 other upstream 349395 14070423 ~ 14134546 (+)
LOC103037142 LOC108429501 other upstream 626580 13810833 ~ 13857361 (+)
LOC103034435 NA other upstream 861899 13617083 ~ 13622042 (+)
LOC103032215 NA other upstream 961684 13509020 ~ 13522257 (+)
G42208 ier5 other upstream 1033464 13448592 ~ 13450477 (+)
G42605 NA other downstream 360892 14895062 ~ 14899248 (+)
LOC103036127 cunh19orf24 other downstream 1444316 15978486 ~ 15984632 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other downstream 1906761 16440931 ~ 16446287 (+)
LOC103044285 NA other downstream 2282431 16816601 ~ 16819251 (+)
LOC111192574 NA other downstream 2414210 16948380 ~ 16950360 (+)

Expression


Co-expression Network