LOC103023991 (rbbp7,rbb4l,LOC103023991,LOC108438657,LOC105893332)


Basic Information

Item Value
gene id LOC103023991
gene name rbbp7,rbb4l,LOC103023991,LOC108438657,LOC105893332
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 15045274 ~ 15051775 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240152.3
TCGCTCAGTAGTGACGTAGTTCTCAGGCGGGCGTTTCTGCGCAGTTGGGATTGGAGCGGTGAGGAGGGAGAGCCGCGCTGAGCTCAAATTAAAACAGATAAACTGCTTCAGGTAGCGCAGAGCTCGAGCTTCGGCCTTTATACTCAGAGTTCTGCAGCTCCCGGCCTGCGGAGGACCCTCAGACATGGCGGATAAAGAAGTGTACGACGATGCTGTAGAGGAGCGGGTCATAAacgaagaatataaaatatggaAGAAAAACACACCCTTTCTCTATGACTTAGTCATGACACATGCACTTGAATGGCCAAGTTTAACAGTGCAGTGGTTGCCCGATGTGAACAGGCCAGAGGGCAAGGACTATGCAGTTCACAGACTGGTATTGGGGACACACACTTCTGATGAGCAGAACCACTTGGTGATTGCCAGTGTTCAGATCCCAAATGATGATGCTCAGTTTGACGCATCGCATTATGACAGTGAAAAAGGAGCAGAGTTTGGTGGATTTGGGTCTGTGAGTGGCAAGATTGAAATTGAGATTAAGATCAATCATGAAGGAGAGGTGAACCGAGCCAGGTACATGCCACAGAACCCCTGCATTATTGCCACAAAGACCCCTACTTCAGACGTGCTGGTGTTTGACTACACTAAACACCCTTCCAAACCAGACCCCAGCGGTGAGTGCAGCCCAGACTTGAGACTCAGGGGACACCAGAAGGAAGGCTATGGTTTGTCCTGGAACCCCAACCTAAGTGGAAACCTGCTCAGTGCATCAGATGACCATACAATTTGTCTATGGGACATCAGTGGATCTCCTAAGGAAGGAAAGATTGTAGATGCCAAGACTATCTTCACAGGCCATACTGCAGTGGTGGAGGACGTGTCTTGGCACCTTCTCCATGAATCACTTTTTGGCTCGGTTGCTGATGACCAGAAACTCATGATTTGGGACACAAGATCCAATAATACAGCCAAGCCTAGCCACGCAGTGGATGCCCACACCGCTGAGGTGAACTGCTTGTCCTTCAACCCCTACAGTGAGTTCATCCTGGCCACTGGTTCTGCAGATAAGACTGTGGCGCTTTGGGATCTACGTAATCTGAAGCTAAAGCTTCACTCCTTCGAGTCGCACAAAGATGAAATCTTTCAGGTTCAGTGGTCGCCCCATAATGAGACCATTCTGGCTTCTAGTGGGACAGACAGGCGACTTAACGTGTGGGACTTGAGCAAAATTGGAGAGGAACAGTCTGCTGAGGATGCTGAAGATGGGCCTCCTGAATTGCTGTTTATTCATGGAGGGCACACAGCAAAAATATCTGATTTCTCATGGAATCCCAATGAACCCTGGGTGATCTGCTCTGTGTCTGAGGACAACATCATGCAAGTTTGGCAAATGgCTGAGAACATCTACAACGATGAGGAACCCGACACTCCTGCCTCAGAGCTCGAGAGTCAAGCTTCGTAAACTTTGAATCCACCATGGAATAGCAGGGTTCACATCTCCCAAGACTGAAGTACCAACCAGGATTCATCCTTTGTCAATCGATTTGGATGGATtaaatgaaacaataaaaatggcTGTATTTCAGGTCTTCATCCAGAgaccaattccaaataaaccAGTGCTGGATTTAATTTCCCcctctttttttcagaaagtATTATTCAGTTTCCTTTCTATCCCTCTGCACTCTAAACTTCAGGTTTGTTTGGAACTTTCCTTTTGAAACAGTAAACCACATTGTGTCAAATAGGTGTTTTCTAGGATTGCCAAGTTATTGGGCAGTTTTTGATGCTTTTGTTACAAAAAGACGGTGAAAGTTTGTTGCTTTCAGAAAATGCACTTGAGTGGACGCTGCTGtttgaatcatttttttctaaattggaGCAGAGTAAAGCAGTTCTCCAAcccatttttagtttttgtgcGTAAACCTTGTCAACTGCAATAAAAATCTTTTGTAATACCTTTTAAAATGATTGCTCATTTTGTATTCCTAAAATGTTAATGGTTACCATAATTCCACAAAGGAATAAAGTACAAATGATA
>XM_022669683.1
CGTTAATGCGGGGTATCGTGGAGGCTAAAATGACAGTCAGTTAAACCTAAAGAAAGTGTACGACGATGCTGTAGAGGAGCGGGTCATAAacgaagaatataaaatatggaAGAAAAACACACCCTTTCTCTATGACTTAGTCATGACACATGCACTTGAATGGCCAAGTTTAACAGTGCAGTGGTTGCCCGATGTGAACAGGCCAGAGGGCAAGGACTATGCAGTTCACAGACTGGTATTGGGGACACACACTTCTGATGAGCAGAACCACTTGGTGATTGCCAGTGTTCAGATCCCAAATGATGATGCTCAGTTTGACGCATCGCATTATGACAGTGAAAAAGGAGCAGAGTTTGGTGGATTTGGGTCTGTGAGTGGCAAGATTGAAATTGAGATTAAGATCAATCATGAAGGAGAGGTGAACCGAGCCAGGTACATGCCACAGAACCCCTGCATTATTGCCACAAAGACCCCTACTTCAGACGTGCTGGTGTTTGACTACACTAAACACCCTTCCAAACCAGACCCCAGCGGTGAGTGCAGCCCAGACTTGAGACTCAGGGGACACCAGAAGGAAGGCTATGGTTTGTCCTGGAACCCCAACCTAAGTGGAAACCTGCTCAGTGCATCAGATGACCATACAATTTGTCTATGGGACATCAGTGGATCTCCTAAGGAAGGAAAGATTGTAGATGCCAAGACTATCTTCACAGGCCATACTGCAGTGGTGGAGGACGTGTCTTGGCACCTTCTCCATGAATCACTTTTTGGCTCGGTTGCTGATGACCAGAAACTCATGATTTGGGACACAAGATCCAATAATACAGCCAAGCCTAGCCACGCAGTGGATGCCCACACCGCTGAGGTGAACTGCTTGTCCTTCAACCCCTACAGTGAGTTCATCCTGGCCACTGGTTCTGCAGATAAGACTGTGGCGCTTTGGGATCTACGTAATCTGAAGCTAAAGCTTCACTCCTTCGAGTCGCACAAAGATGAAATCTTTCAGGTTCAGTGGTCGCCCCATAATGAGACCATTCTGGCTTCTAGTGGGACAGACAGGCGACTTAACGTGTGGGACTTGAGCAAAATTGGAGAGGAACAGTCTGCTGAGGATGCTGAAGATGGGCCTCCTGAATTGCTGTTTATTCATGGAGGGCACACAGCAAAAATATCTGATTTCTCATGGAATCCCAATGAACCCTGGGTGATCTGCTCTGTGTCTGAGGACAACATCATGCAAGTTTGGCAAATGgCTGAGAACATCTACAACGATGAGGAACCCGACACTCCTGCCTCAGAGCTCGAGAGTCAAGCTTCGTAAACTTTGAATCCACCATGGAATAGCAGGGTTCACATCTCCCAAGACTGAAGTACCAACCAGGATTCATCCTTTGTCAATCGATTTGGATGGATtaaatgaaacaataaaaatggcTGTATTTCAGGTCTTCATCCAGAgaccaattccaaataaaccAGTGCTGGATTTAATTTCCCcctctttttttcagaaagtATTATTCAGTTTCCTTTCTATCCCTCTGCACTCTAAACTTCAGGTTTGTTTGGAACTTTCCTTTTGAAACAGTAAACCACATTGTGTCAAATAGGTGTTTTCTAGGATTGCCAAGTTATTGGGCAGTTTTTGATGCTTTTGTTACAAAAAGACGGTGAAAGTTTGTTGCTTTCAGAAAATGCACTTGAGTGGACGCTGCTGtttgaatcatttttttctaaattggaGCAGAGTAAAGCAGTTCTCCAAcccatttttagtttttgtgcGTAAACCTTGTCAACTGCAATAAAAATCTTTTGTAATACCTTTTAAAATGATTGCTCATTTTGTATTCCTAAAATGTTAATGGTTACCATAATTCCACAAAGGAATAAAGTACAAATGATA
>XM_022669684.1
CACTCACTGTATACTCACACAGAGACAAAGCTCTTTATACCCCTTGGAACTTATTTAACCAACTGCTGTGTGTTTCTTACATCAGCCACACAGCCAGACAACATTAACAAACAGGTGTACGACGATGCTGTAGAGGAGCGGGTCATAAacgaagaatataaaatatggaAGAAAAACACACCCTTTCTCTATGACTTAGTCATGACACATGCACTTGAATGGCCAAGTTTAACAGTGCAGTGGTTGCCCGATGTGAACAGGCCAGAGGGCAAGGACTATGCAGTTCACAGACTGGTATTGGGGACACACACTTCTGATGAGCAGAACCACTTGGTGATTGCCAGTGTTCAGATCCCAAATGATGATGCTCAGTTTGACGCATCGCATTATGACAGTGAAAAAGGAGCAGAGTTTGGTGGATTTGGGTCTGTGAGTGGCAAGATTGAAATTGAGATTAAGATCAATCATGAAGGAGAGGTGAACCGAGCCAGGTACATGCCACAGAACCCCTGCATTATTGCCACAAAGACCCCTACTTCAGACGTGCTGGTGTTTGACTACACTAAACACCCTTCCAAACCAGACCCCAGCGGTGAGTGCAGCCCAGACTTGAGACTCAGGGGACACCAGAAGGAAGGCTATGGTTTGTCCTGGAACCCCAACCTAAGTGGAAACCTGCTCAGTGCATCAGATGACCATACAATTTGTCTATGGGACATCAGTGGATCTCCTAAGGAAGGAAAGATTGTAGATGCCAAGACTATCTTCACAGGCCATACTGCAGTGGTGGAGGACGTGTCTTGGCACCTTCTCCATGAATCACTTTTTGGCTCGGTTGCTGATGACCAGAAACTCATGATTTGGGACACAAGATCCAATAATACAGCCAAGCCTAGCCACGCAGTGGATGCCCACACCGCTGAGGTGAACTGCTTGTCCTTCAACCCCTACAGTGAGTTCATCCTGGCCACTGGTTCTGCAGATAAGACTGTGGCGCTTTGGGATCTACGTAATCTGAAGCTAAAGCTTCACTCCTTCGAGTCGCACAAAGATGAAATCTTTCAGGTTCAGTGGTCGCCCCATAATGAGACCATTCTGGCTTCTAGTGGGACAGACAGGCGACTTAACGTGTGGGACTTGAGCAAAATTGGAGAGGAACAGTCTGCTGAGGATGCTGAAGATGGGCCTCCTGAATTGCTGTTTATTCATGGAGGGCACACAGCAAAAATATCTGATTTCTCATGGAATCCCAATGAACCCTGGGTGATCTGCTCTGTGTCTGAGGACAACATCATGCAAGTTTGGCAAATGgCTGAGAACATCTACAACGATGAGGAACCCGACACTCCTGCCTCAGAGCTCGAGAGTCAAGCTTCGTAAACTTTGAATCCACCATGGAATAGCAGGGTTCACATCTCCCAAGACTGAAGTACCAACCAGGATTCATCCTTTGTCAATCGATTTGGATGGATtaaatgaaacaataaaaatggcTGTATTTCAGGTCTTCATCCAGAgaccaattccaaataaaccAGTGCTGGATTTAATTTCCCcctctttttttcagaaagtATTATTCAGTTTCCTTTCTATCCCTCTGCACTCTAAACTTCAGGTTTGTTTGGAACTTTCCTTTTGAAACAGTAAACCACATTGTGTCAAATAGGTGTTTTCTAGGATTGCCAAGTTATTGGGCAGTTTTTGATGCTTTTGTTACAAAAAGACGGTGAAAGTTTGTTGCTTTCAGAAAATGCACTTGAGTGGACGCTGCTGtttgaatcatttttttctaaattggaGCAGAGTAAAGCAGTTCTCCAAcccatttttagtttttgtgcGTAAACCTTGTCAACTGCAATAAAAATCTTTTGTAATACCTTTTAAAATGATTGCTCATTTTGTATTCCTAAAATGTTAATGGTTACCATAATTCCACAAAGGAATAAAGTACAAATGATA

Function

symbol description
rbb4l Acts upstream of or within fin regeneration and hematopoietic progenitor cell differentiation. Predicted to be located in nucleus. Predicted to be part of ESC/E(Z) complex. Is expressed in mesoderm. Orthologous to several human genes including RBBP7 (RB binding protein 7, chromatin remodeling factor).
rbbp7 Enables histone binding activity. Involved in cellular heat acclimation and negative regulation of cell growth. Located in cytosol and nucleoplasm. Part of ESC/E(Z) complex and NuRD complex.

NR:

description
histone-binding protein RBBP7 isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006260 DNA replication biological_process
GO:0035098 ESC/E(Z) complex cellular_component

KEGG:

id description
K10752 RBBP4, HAT2, CAF1, MIS16; histone-binding protein RBBP4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240152.3 True 2050 mRNA 0.45 12 15045274 15051775
XM_022669683.1 False 1906 mRNA 0.44 12 15045738 15051775
XM_022669684.1 False 1965 mRNA 0.44 12 15045607 15051775

Neighbor

gene id symbol gene type direction distance location
LOC103022023 NA coding upstream 50658 14972261 ~ 14994616 (+)
LOC103045821 plak,LOC108438667,LOC108270763,LOC107562072,LOC107680531,LOC107753847 coding upstream 176535 14834224 ~ 14868739 (+)
LOC103026778 NA coding upstream 319317 14711374 ~ 14725957 (+)
LOC103026177 fgf22,LOC106613753,LOC106584266 coding upstream 385249 14622178 ~ 14660025 (+)
LOC103044493 hcn2,LOC108429559,LOC107569045,LOC107569931,LOC107719599,LOC107655221 coding upstream 511104 14483941 ~ 14534170 (+)
rtel1 rtel1,LOC107579445 coding downstream 10852 15062627 ~ 15089931 (+)
zgpat zgpat coding downstream 39596 15091371 ~ 15097213 (+)
ptgfr ptgfr coding downstream 79202 15130977 ~ 15136409 (+)
LOC103026176 bt3l4,btf3l4,LOC103026176,LOC105028135,LOC107562065 coding downstream 86489 15138264 ~ 15141396 (+)
LOC103027567 LOC108438649,LOC108270756 coding downstream 91694 15143469 ~ 15170638 (+)
G42636 npepps,LOC107098842,LOC102793525 non-coding upstream 25739 15014943 ~ 15019535 (+)
G42633 NA non-coding upstream 34300 15010480 ~ 15010974 (+)
G42632 NA non-coding upstream 43178 15000435 ~ 15002096 (+)
G42626 NA non-coding upstream 78404 14966150 ~ 14966870 (+)
G42604 NA non-coding upstream 141340 14890941 ~ 14903934 (+)
G42647 txlng,LOC107665847 non-coding downstream 5440 15057215 ~ 15057675 (+)
G42648 txlng non-coding downstream 6843 15058618 ~ 15061447 (+)
G42756 LOC108438650,LOC108270818,LOC107656106,LOC107753833,LOC107562086,LOC107602768,LOC107723066 non-coding downstream 50701 15102476 ~ 15191970 (+)
G42763 NA non-coding downstream 112940 15164715 ~ 15165694 (+)
G42807 NA non-coding downstream 326226 15378001 ~ 15378608 (+)
G42605 NA other upstream 146026 14895062 ~ 14899248 (+)
eps15l1 eps15l1 other upstream 910728 14070423 ~ 14134546 (+)
LOC103037142 LOC108429501 other upstream 1187913 13810833 ~ 13857361 (+)
LOC103034435 NA other upstream 1423232 13617083 ~ 13622042 (+)
LOC103032215 NA other upstream 1523017 13509020 ~ 13522257 (+)
LOC103036127 cunh19orf24 other downstream 926711 15978486 ~ 15984632 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other downstream 1389156 16440931 ~ 16446287 (+)
LOC103044285 NA other downstream 1764826 16816601 ~ 16819251 (+)
LOC111192574 NA other downstream 1896605 16948380 ~ 16950360 (+)
dda1 dda1,LOC105913185,LOC107685208,LOC105012003 other downstream 1960692 17012467 ~ 17017856 (+)

Expression


Co-expression Network