zgpat (zgpat)


Basic Information

Item Value
gene id zgpat
gene name zgpat
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 15091371 ~ 15097213 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240157.3
TTAGGGCTGCATATTTTCGTTGGACTTGGCAACCCTGGCTGCTACAGAGCCGCACAGGGCAGCTTTAAACTACAGAAACGCAGCAGAGTTTATTCGCTCGGACGTGAACACTATGTAATGCACCTCCTTTCATAGCTCCCTACCATGGATGAAGGCAACCTGCAACAAGCCATTGAGACCTACAATGCTCAGCTTCAGCAGGTAGAAGCTGCACTTGCTTGTGGTCTGGGTGCTTCAGAGCAGGCAGACCTGCTGAAGTTAAAGGAGGATCTTGTACAACTTATTGAGCTCACTGAATCCAGCTTGATTTCAGTCAAGAAGAGCCAACTTTTTGCCTCAATTGAGGATTCCCAAACAAAGCAGGAAGCGCCAGCAGAAACCCAAGAACTGTCCAAGAAGAATAACAATTTGGATGATGAGTTTGCAGCCTTTTATTCTGGACTTTCTGAAAGTGCTGCGGAGGTAGCACAAAGCCGCGGgcctgatgatgatgaagaggaagtggatgatgaggaggaggaggaagaagaagatgacTACATGAGTGGTACTAAAGTACGAGCACCTTATCGCACCTCTTGGGGAACACTTGAGTACCACAATGCCATGGTAGTGTGCTCAGAGGAACCAGATGGGGATGAGGCTCGAGTGAGAGTCCTTTACCTCTATCCTACACACAAGTCTATAAAGCCCTGCCCTTTCTTTCTGGATGGCAAGTGCCGCTTTATGGATAGCTGCAGGTACTCCCATGGGGAGGTGGTATGTGTGTCCGAGCTGAGGGAATTTCTTGAAGCAGATCTCACACAAATGCAGGCAGGATCTTCGTGTTTGGCCAAGCATGAAGACGGCATCTGGTATCCTGCCAAAATCACAGAGATTGAGGATGGCTTCTACACGGTTAAATTTGATTCCTTGCTGCTAAAGGAAGCTGTCCTTGAGGCTGATAGTGTTATTCCCCCTTTGCGACCGGATGagtcctcctcttcctcctctgaCTCGGAAGATGACTCTGAGGAATGTGAAACAGGTTATGCTAAAGtattTAGTTCTGCTAAAGAGGAGGACTCTGTTCAGTTGAACAGCTCTGAGTTCTGTGGTTGGGAAGCTCATACTCGCGGCATTGGTTCCAAGCTCTTGCTGAAGATGGGTTATGAGTTGGGGAAAGGTTTGGGAAAGACACTTTCTGGTCGTGTGGAGCCAGTGCAGGCCGTGGTCCTTCCCAAAGGCCGATCGCTGGACCAGTGTGCTGAGTTAACTCAGCGGAAGACTCATGCTGCTATCGCAAAAGACAATCCAACCTCTGGCAAAcggaaaataaaaaggaaaaagaaatccaCTTCAACACGGCCTAATGTATTTGACTTTTTGAACTCTAAACTGGGCGATGATGCTCGTTCTGTTGCTGGCCCTTCAGTTAGCTCTTCGGTCAGCGGAGTGGAAGCCTACCAAGGAGGAAAAAGCACCAAGCGTTCACTCaatgttcagctgtttcaagctacagagagagtgagCCAGGTGGAGAAAGAAATCCAGCAGCTCACCGAGTCTCTGAACAGGCGAAACGGAAGGGATGCCAAATTGACAAGCCGCATGGAGGAGAAGCTCTCAGCATCTCGGAAGCTGCTGCAGCAGCTGAAAGCTCAGGAGCAGTCTATACAGAGAGCTCAGAAAAAAGCAGACACTCATAAGAAAATGACAGAATTTTAATCAACTCTCCAGTGTGAGTGCAAACAATGTCTAATGACCTTGTTTATACTGCTGTTAGGTTATGAAGAGATATGTTTTTCATACATTTGTACAAGTGTGCATGTTAGTGTGcaacttggaatttgggatcaACATCACTTCCACGCCCGTGAGatgagaaagaagaaaacactgaaatgacTTACAATACTGTTTCTTCTGAACTATTTTCCCTTGGAACACTTTTTTTCCACTGTTCTCAGAATGAGACTTGACCattcatttaatacatttttttttaaacttgtgtTTATCACAAACATGGCTCCTGTTGACTGATTGTGCTGCTGGTTTAGTTATGGTTAGCTTCAGCAGGTTTTAtcgttaatttaatttaatgatgaATGTCAACAATTAGCCATTCATATCTAAATCCTTTCTACGCCTTAAATTATGGCCCAGAaatcttgttttatttgtatgctAGACAGTACACTGCACTGTGCTGTAATATTAATGTGGTTTCTGGTTCCTCTCAGGAGGACCAAACAGGATATACCAGACTAATGAATAAGCAGCTTCCTGGTGCAGTAAAGTGCTGTAGAAAGCTCTGCTGTGTTgcatattctgtatttttgttttgtttttctttggaaCCTAGTTTGGGATATGTAATTTAACAACTTGGCCTTTAATAAATTTTGCTATGATAACATTACAGCA

Function

symbol description
zgpat Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in negative regulation of epidermal growth factor-activated receptor activity; negative regulation of transcription, DNA-templated; and regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZGPAT (zinc finger CCCH-type and G-patch domain containing).

NR:

description
zinc finger CCCH-type with G patch domain-containing protein

GO:

id name namespace
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0007175 negative regulation of epidermal growth factor-activated receptor activity biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240157.3 True 2409 mRNA 0.45 7 15091371 15097213

Neighbor

gene id symbol gene type direction distance location
rtel1 rtel1,LOC107579445 coding upstream 1440 15062627 ~ 15089931 (+)
LOC103023991 rbbp7,rbb4l,LOC103023991,LOC108438657,LOC105893332 coding upstream 39596 15045274 ~ 15051775 (+)
LOC103022023 NA coding upstream 96755 14972261 ~ 14994616 (+)
LOC103045821 plak,LOC108438667,LOC108270763,LOC107562072,LOC107680531,LOC107753847 coding upstream 222632 14834224 ~ 14868739 (+)
LOC103026778 NA coding upstream 365414 14711374 ~ 14725957 (+)
ptgfr ptgfr coding downstream 33764 15130977 ~ 15136409 (+)
LOC103026176 bt3l4,btf3l4,LOC103026176,LOC105028135,LOC107562065 coding downstream 41051 15138264 ~ 15141396 (+)
LOC103027567 LOC108438649,LOC108270756 coding downstream 46256 15143469 ~ 15170638 (+)
LOC103027889 mob3c,LOC103027889,LOC108438648,LOC108270829,LOC106574029,LOC106613547 coding downstream 116046 15213259 ~ 15225170 (+)
mknk1 mknk1 coding downstream 129937 15227150 ~ 15234385 (+)
G42648 txlng non-coding upstream 29924 15058618 ~ 15061447 (+)
G42647 txlng,LOC107665847 non-coding upstream 33696 15057215 ~ 15057675 (+)
G42637 txlng non-coding upstream 36491 15017800 ~ 15054880 (+)
G42636 npepps,LOC107098842,LOC102793525 non-coding upstream 71836 15014943 ~ 15019535 (+)
G42633 NA non-coding upstream 80397 15010480 ~ 15010974 (+)
G42756 LOC108438650,LOC108270818,LOC107656106,LOC107753833,LOC107562086,LOC107602768,LOC107723066 non-coding downstream 5263 15102476 ~ 15191970 (+)
G42763 NA non-coding downstream 67502 15164715 ~ 15165694 (+)
G42807 NA non-coding downstream 280788 15378001 ~ 15378608 (+)
G42810 NA non-coding downstream 317464 15414677 ~ 15415189 (+)
G42813 NA non-coding downstream 323499 15420712 ~ 15421122 (+)
G42605 NA other upstream 192123 14895062 ~ 14899248 (+)
eps15l1 eps15l1 other upstream 956825 14070423 ~ 14134546 (+)
LOC103037142 LOC108429501 other upstream 1234010 13810833 ~ 13857361 (+)
LOC103034435 NA other upstream 1469329 13617083 ~ 13622042 (+)
LOC103032215 NA other upstream 1569114 13509020 ~ 13522257 (+)
LOC103036127 cunh19orf24 other downstream 881273 15978486 ~ 15984632 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other downstream 1343718 16440931 ~ 16446287 (+)
LOC103044285 NA other downstream 1719388 16816601 ~ 16819251 (+)
LOC111192574 NA other downstream 1851167 16948380 ~ 16950360 (+)
dda1 dda1,LOC105913185,LOC107685208,LOC105012003 other downstream 1915254 17012467 ~ 17017856 (+)

Expression


Co-expression Network