rtel1 (rtel1,LOC107579445)


Basic Information

Item Value
gene id rtel1
gene name rtel1,LOC107579445
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 15062627 ~ 15089931 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240158.3
TTTGTGCATTAGAGCAGTGTGACCTGTAGGGGGCAGGAGGAACGCATTTCGGCTTTTCGGCAGCTCGTAAAAGAAGACGGTGAAGAGCTGTGGCGCGCTGCGGGGATGTGTTGTTATGTAGTTGGGTAAAGTGAAGctgctgtttatttaattattagagGAGCTGATTAGTTGGGTCTGTCTATGCGCTTTATAGCCCAGTCCTCTGCTGTCTGTGTCGTGGTGTCCGCGGCGAGGCTGCAGGATGCCTGTTCTCTCTTTAAGAGGAGTTAATGTGGATTTCCCTTTCACTCCGTATCCATGTCAGACGGATTACATGAACAAAGTCATTGAATGCCTGCAAAGCAAGGTAAATGGAGTTCTTGAAAGTCCAACAGGTACAGGGAAAACCCTGTGTCTGCTTTGTGCGACTCTTGGCTGGAGGGAATACTTCAAGGACTCCATATCTGCCCGCAAGATTTCAGAGAAGATGGGAGGTGCCGAGCTTTTTCCTGACAGGCCCATGTCTTCATGGGGAACAGCAGCAACTGACGGAGACGTCCCAGCATATTACACAGATATACCCAAAATCATCTATGCATCCAGAACACATTCTCAGTTAACGCAAGTCGTCAGTGAGCTGAAGAACACAGCTTACAGGCCAAAGGTTTGTGTTCTGGGGTCCAGAGAACAACTTTGCATCAACCAAGAAATAATGAAGCAGGAAAGCAACCACATAAAGGTCCACATGTGCCGAGCCAAAGTTTCAACCCGCTCATGTCTCTTCTATAACAATGTTGATGAGAAGAGTACTGACAAAGACATCATGAACTCTATCCTGGATGTTGAAGATCTTGTGAAAACTGGTAAAAAGGAAAGAGTGTGTCCATATTATCTTTCCCGCTCTCTGAAGCAGCATGCTGATCTCATATTCATGCCGTACAACTACCTGCTGGATCCAAAGAGTCGCCGGGCACACAACATAGAGCTTAAAGGAGCCGTTGTCATTTTTGATGAGGCACACAATGTGGAGAAGATGTGTGAAGAGTCCACTTCATTTGACCTAACGCCTTATGACTTGACCTCAGCCATTGATGCTGTGGACAAGCTTCTGAGGGAGCAGGCCTCAGATATTGGAAAAGGAGACTCTTCAGAGGATTTTAATGTCGAGTCTCTAAACTCAGgaCTGAAACTGGACATCACAACAATTGCTAAAATAAAACAAATTTTAATGGACCTGGAACTTACTATAAATAGTTTTGAGATGCCCTCAAATAACCAGGGAATTACCAAGCCTGGCAGCTACATTTATGAACTTTTTGAAAAGACACACGTAAACTTTGACACGAAGACTGCGATTGTGGAGGCAATGGAGCAGATCACTGGATATCTGGCAGGAAAGCCTGGTATCTTTCTCAACACCAGCGGACTGCAGAAGGTTGCAGATATAATCCAGTTGGTGTTTGTAGTGGATCCTGCAGAGGGCAGTAAGAAATCACAGATGGTGAACAGCATGAAGCAGTTTAAGGTACACATCCATCCAGACACAAGCAACttcaaaaagaagcagagcaCCGACGTGTGGGCATCTTCTTCTGCGAAGAAACAAGgGAATGTGTTGAGCTACTGGTGTTTCTGTCCGGGCTTCAGCATGCAAGAGTTGCTCAGACAGGAGGTGCGCTGCATCATCCTGACCAGCGGGACTCTTTCGCCACTTTCGTCTTTCACCTGCGAAATGCAAATCCCCTTTCCTGTGAGTTTGGAAAACCCTCATGTCATTCAGAAGGACCAGATTTTCGTCAGCATTGTTGACAAAGGGCCGGACGGAGTGCAGCTCAGCACAGCTTTTGACAAGAGGTTTGTTCCTGAGAACATGGCGTCCTTAGGAAATACTATTGtaaatcTGAGTCGAGTAGTTCCACACGGCCTGCTGGTGTTCTTTCCCTCATACCCTGTATTGGACAAGACTCTGGAATTCTGGAGGGCGAATGGCCATGCTGACCGCATAGAGAATATGAAACCCATGTTTGTAGAACCCAGAGGGAAAGGCACATTTACAGAGGTGATTGATGGTTTTTATGACAAGGTGAATGATCCAAAGTCAAATGGAGGGAGTTTCTTTGCTGTATGCAGAGGAAAGGCCAGTGAAGGATTGGACTTTGCGGACACCTACGGCCGTGGGGTGATCATCACCGGTCTGCCCTTCCCTCCGAGAATGGACCCGAGGGTAGTGCTGAAGATGCAGTATTTGGATGAGATGTGCAGGAACAAATCCAGTGGCATGAAGTATTTGTCTGGGCAGGAGTGGTACAGGCAGCAGGCATCACGCGCTGTGAACCAGGCCATTGGCAGAGTAATCCGCCATCGCGAGGATTACGGAGCGATATTCCTCTGTGACCACAGgtTCAAAAATACAGATGTTCGAGCTCAGCTTCCTTCTTGGGTCCGGCCTTATGTCAGGATGGATAACTTCGGCACTGTGGTTCGCGATGCTGCTCAGTTTTTCCGGGTTGCACAGAAGCTTAGACCAGTTCCCCAGAAGAAGGTGAAAAAGGCAGAGCGTGAGAATTGCTCAGTTCCAGACACTTGCCAGAGTGGAGGAGGCAGTCGTCCAGCTCAGAGTGCCTGGCAGAGTAGCTCCTCTCTGAAAGCCAAAGTACTGGACTCTCATGTTCCCAGCCTAAAGAGGAGGAGACTGGATGAACACTCTGGGAGAGATGGGACAGCTGGGCTGTGTATTCAGTATGAGATGGAGATGAGCTCCACCAAAAAGAAGCCTCTGAGTCTACTTGATGCCCTGGACAACAGTGACCCGAGGTCAGGTGAAGGGGACGACATGGTTGGAGAGGAGAGGGCAAGTCGCTTGTCAACACTCTCTCTACAACATGATAAACGCATGGATGATGAATGCAGGGGTGGGAAACGCAAAATCAGAGTAGTACAAGATCggAAACCTGTAGAATCCAGTGCTGCAGGCAAAGGCAAGGCCTTCATGGTGGAGCTGAAGAGACATTTGAGCCAAGACAGTTTCACGAAGATCATGCATGCGCTCCAGGTGTACAAGGCCACTGATCACCTTGATGACCTTGTGGCGAAAGCAGCAGATCTCCTTTTACAAgaccccaacacacacagtctgcttaGAGGGCTCTACCAGTTTATTCGACCACACCACAAGAAGCAGTTTGATGAGAAGTGTCAGGTGCTTACAGGCCAGGGCTGTGGCTACAAGCATGAGCACTCGCTCTCAAGGGAAGAGAGGGAAACCCTCAGACAACAAACAGtaaaagcgGAAACTACTGAAAAAGCCACAATCAAAGAACTAGACTCGAGCAAACAACTGAATCAAGGCGGCTCTCATTTGGGAACACACAATTTGTGTGGTGTGGGTGCAGTGAAGGATCAGAAACCACAGAAGCCACAGACGTCAGGAAAAGATGGCCAGTTCAGCGCTACCCTTCTGTCCGACATTAAAAAAGCTATTGGTTCTGAAAAAACCAATCAACTATTTATAGCGTTGCAGACGtacaagaaaacaaataattatgaGCAGATGGTATCAACAGTTGTGGGATTGCTGACAGAGCGGGACGAAGACATTGTCCTTTTAAGACggTTATCTGTGTTCATCCCGCCACACCACAGTCAGCAGTTCTCTGAGATGTTAAAGTCTTTGACTGGCAGTGCTTCAGTGACCTGTGAAGAATCAGAAGAAGCTTCCAGTCACCCAGTTCCAGCATCACAACTCTCAGCAGGAAAATCACAGAGCAAGATATCATCCTTCTTCTCCTGACCAGGGGAATCCAGCCAGACATACTGATTTGTTTGGTTAAAAG

Function

symbol description
rtel1 Predicted to enable several functions, including 4 iron, 4 sulfur cluster binding activity; ATP binding activity; and DNA helicase activity. Predicted to be involved in regulation of double-strand break repair via homologous recombination. Predicted to act upstream of or within DNA metabolic process and DNA replication. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in autosomal recessive dyskeratosis congenita 5. Orthologous to human RTEL1 (regulator of telomere elongation helicase 1).

NR:

description
regulator of telomere elongation helicase 1

GO:

id name namespace
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K11136 RTEL1; regulator of telomere elongation helicase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240158.3 True 3815 mRNA 0.48 33 15062627 15089931

Neighbor

gene id symbol gene type direction distance location
LOC103023991 rbbp7,rbb4l,LOC103023991,LOC108438657,LOC105893332 coding upstream 10852 15045274 ~ 15051775 (+)
LOC103022023 NA coding upstream 68011 14972261 ~ 14994616 (+)
LOC103045821 plak,LOC108438667,LOC108270763,LOC107562072,LOC107680531,LOC107753847 coding upstream 193888 14834224 ~ 14868739 (+)
LOC103026778 NA coding upstream 336670 14711374 ~ 14725957 (+)
LOC103026177 fgf22,LOC106613753,LOC106584266 coding upstream 402602 14622178 ~ 14660025 (+)
zgpat zgpat coding downstream 1440 15091371 ~ 15097213 (+)
ptgfr ptgfr coding downstream 41046 15130977 ~ 15136409 (+)
LOC103026176 bt3l4,btf3l4,LOC103026176,LOC105028135,LOC107562065 coding downstream 48333 15138264 ~ 15141396 (+)
LOC103027567 LOC108438649,LOC108270756 coding downstream 53538 15143469 ~ 15170638 (+)
LOC103027889 mob3c,LOC103027889,LOC108438648,LOC108270829,LOC106574029,LOC106613547 coding downstream 123328 15213259 ~ 15225170 (+)
G42648 txlng non-coding upstream 1180 15058618 ~ 15061447 (+)
G42647 txlng,LOC107665847 non-coding upstream 4952 15057215 ~ 15057675 (+)
G42637 txlng non-coding upstream 7747 15017800 ~ 15054880 (+)
G42636 npepps,LOC107098842,LOC102793525 non-coding upstream 43092 15014943 ~ 15019535 (+)
G42633 NA non-coding upstream 51653 15010480 ~ 15010974 (+)
G42756 LOC108438650,LOC108270818,LOC107656106,LOC107753833,LOC107562086,LOC107602768,LOC107723066 non-coding downstream 12545 15102476 ~ 15191970 (+)
G42763 NA non-coding downstream 74784 15164715 ~ 15165694 (+)
G42807 NA non-coding downstream 288070 15378001 ~ 15378608 (+)
G42810 NA non-coding downstream 324746 15414677 ~ 15415189 (+)
G42813 NA non-coding downstream 330781 15420712 ~ 15421122 (+)
G42605 NA other upstream 163379 14895062 ~ 14899248 (+)
eps15l1 eps15l1 other upstream 928081 14070423 ~ 14134546 (+)
LOC103037142 LOC108429501 other upstream 1205266 13810833 ~ 13857361 (+)
LOC103034435 NA other upstream 1440585 13617083 ~ 13622042 (+)
LOC103032215 NA other upstream 1540370 13509020 ~ 13522257 (+)
LOC103036127 cunh19orf24 other downstream 888555 15978486 ~ 15984632 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other downstream 1351000 16440931 ~ 16446287 (+)
LOC103044285 NA other downstream 1726670 16816601 ~ 16819251 (+)
LOC111192574 NA other downstream 1858449 16948380 ~ 16950360 (+)
dda1 dda1,LOC105913185,LOC107685208,LOC105012003 other downstream 1922536 17012467 ~ 17017856 (+)

Expression


Co-expression Network