LOC103026176 (bt3l4,btf3l4,LOC103026176,LOC105028135,LOC107562065)


Basic Information

Item Value
gene id LOC103026176
gene name bt3l4,btf3l4,LOC103026176,LOC105028135,LOC107562065
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 15138264 ~ 15141396 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240159.3
TGTAcgagcaaataaaataaaagtgacgTCACTGGTGTCCTCATTTCCTCCTTCTTCCTGCGCCGCATGCTTTTCTGAGCAGCTGTGGGGAACAGaagACAATATGAATCAAGAGAAACTCGCTAAACTTCAAGCCCAAGTCCGAATAGGGGGCAAGggcaCAGCACGTAGGAAGAAGAAGGTCGTCCACAGAACAGCAACAGCTGACGACAAAAAACTTCAGAGTTCCTTAAAGAAACTTGCTGTGAATAACATCGCTGGCATAGAGGAGGTGAACATGATAAAGGACGATGGGACCGTGATCCATTTCAATAATCCCAAAGTGCAGGCGTCTTTGTCTGCCAACACGTTTGCCATTACAGGCCATGCAGAGACCAAGCAGTTGACAGAGATGCTACCCGGTATTCTCAGTCAACTCGGCGCAGACAGTCTTACAAGTTTGCGTAAAATAGCGGAGCAGTTCCCCAGACAAGTTCTCGACAACAAAGCCCCCAAAGCAGAAGATATTGATGAGGAGGACGATGATGTCCCAGATCTGGTGGAGAACTTTGATGAAGCATCAAAGAATGAGGCAAACTGATTCCGCACGACCTCTTTAATTGGAATTGCAGTTCAGGGAAGACCCTGTTGCAGTATTTTAAATTAGATGACTGGCGACATATCATTTCAACACTATCCAGCAGTGCAGAgacttttgtattttaaattggCGGTCTGCCTAGATAATCTTCATTGGCCTGGTTCTTGCACTTAAATGAGAAGGCGGTTATGAGCTATAACTTACGGTTCAGGATGAATACCACATTGCAATCTTGACCATGATTGGTGTGGTTATGGAATAACTAgtcttaattattatttttgtcaatGAAACAATAAATATCATAAACCTTTTTA
>XM_007240160.3
gcacaactcgacagaacaccggagcGATGCGAACAGCCCACTGCCCAGCTAAaagACAATATGAATCAAGAGAAACTCGCTAAACTTCAAGCCCAAGTCCGAATAGGGGGCAAGggcaCAGCACGTAGGAAGAAGAAGGTCGTCCACAGAACAGCAACAGCTGACGACAAAAAACTTCAGAGTTCCTTAAAGAAACTTGCTGTGAATAACATCGCTGGCATAGAGGAGGTGAACATGATAAAGGACGATGGGACCGTGATCCATTTCAATAATCCCAAAGTGCAGGCGTCTTTGTCTGCCAACACGTTTGCCATTACAGGCCATGCAGAGACCAAGCAGTTGACAGAGATGCTACCCGGTATTCTCAGTCAACTCGGCGCAGACAGTCTTACAAGTTTGCGTAAAATAGCGGAGCAGTTCCCCAGACAAGTTCTCGACAACAAAGCCCCCAAAGCAGAAGATATTGATGAGGAGGACGATGATGTCCCAGATCTGGTGGAGAACTTTGATGAAGCATCAAAGAATGAGGCAAACTGATTCCGCACGACCTCTTTAATTGGAATTGCAGTTCAGGGAAGACCCTGTTGCAGTATTTTAAATTAGATGACTGGCGACATATCATTTCAACACTATCCAGCAGTGCAGAgacttttgtattttaaattggCGGTCTGCCTAGATAATCTTCATTGGCCTGGTTCTTGCACTTAAATGAGAAGGCGGTTATGAGCTATAACTTACGGTTCAGGATGAATACCACATTGCAATCTTGACCATGATTGGTGTGGTTATGGAATAACTAgtcttaattattatttttgtcaatGAAACAATAAATATCATAAACCTTTTTA
>XM_022670125.1
TTATCAGCTGTTTATCGATCCTATCAGCTCCTCGTCGTTTACTGTGGCTGATCAaagACAATATGAATCAAGAGAAACTCGCTAAACTTCAAGCCCAAGTCCGAATAGGGGGCAAGggcaCAGCACGTAGGAAGAAGAAGGTCGTCCACAGAACAGCAACAGCTGACGACAAAAAACTTCAGAGTTCCTTAAAGAAACTTGCTGTGAATAACATCGCTGGCATAGAGGAGGTGAACATGATAAAGGACGATGGGACCGTGATCCATTTCAATAATCCCAAAGTGCAGGCGTCTTTGTCTGCCAACACGTTTGCCATTACAGGCCATGCAGAGACCAAGCAGTTGACAGAGATGCTACCCGGTATTCTCAGTCAACTCGGCGCAGACAGTCTTACAAGTTTGCGTAAAATAGCGGAGCAGTTCCCCAGACAAGTTCTCGACAACAAAGCCCCCAAAGCAGAAGATATTGATGAGGAGGACGATGATGTCCCAGATCTGGTGGAGAACTTTGATGAAGCATCAAAGAATGAGGCAAACTGATTCCGCACGACCTCTTTAATTGGAATTGCAGTTCAGGGAAGACCCTGTTGCAGTATTTTAAATTAGATGACTGGCGACATATCATTTCAACACTATCCAGCAGTGCAGAgacttttgtattttaaattggCGGTCTGCCTAGATAATCTTCATTGGCCTGGTTCTTGCACTTAAATGAGAAGGCGGTTATGAGCTATAACTTACGGTTCAGGATGAATACCACATTGCAATCTTGACCATGATTGGTGTGGTTATGGAATAACTAgtcttaattattatttttgtcaatGAAACAATAAATATCATAAACCTTTTTA

Function

symbol description
btf3l4 Orthologous to human BTF3L4 (basic transcription factor 3 like 4).

NR:

description
transcription factor BTF3 homolog 4

GO: NA

KEGG:

id description
K01527 EGD1, BTF3; nascent polypeptide-associated complex subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240159.3 True 897 mRNA 0.43 6 15138264 15141396
XM_007240160.3 False 854 mRNA 0.44 6 15138996 15141396
XM_022670125.1 False 856 mRNA 0.43 6 15138367 15141396

Neighbor

gene id symbol gene type direction distance location
ptgfr ptgfr coding upstream 1855 15130977 ~ 15136409 (+)
zgpat zgpat coding upstream 41051 15091371 ~ 15097213 (+)
rtel1 rtel1,LOC107579445 coding upstream 48333 15062627 ~ 15089931 (+)
LOC103023991 rbbp7,rbb4l,LOC103023991,LOC108438657,LOC105893332 coding upstream 86489 15045274 ~ 15051775 (+)
LOC103022023 NA coding upstream 143648 14972261 ~ 14994616 (+)
LOC103027567 LOC108438649,LOC108270756 coding downstream 2073 15143469 ~ 15170638 (+)
LOC103027889 mob3c,LOC103027889,LOC108438648,LOC108270829,LOC106574029,LOC106613547 coding downstream 71863 15213259 ~ 15225170 (+)
mknk1 mknk1 coding downstream 85754 15227150 ~ 15234385 (+)
atp5b atp5b,LOC107723059,LOC100693141,LOC102199207 coding downstream 111519 15252915 ~ 15257121 (+)
LOC103028308 abcb11,abcb11b,LOC108438644,LOC107692229,LOC107602798,LOC108270741,LOC105911976,LOC103354593 coding downstream 134030 15275426 ~ 15296603 (+)
G42648 txlng non-coding upstream 76817 15058618 ~ 15061447 (+)
G42647 txlng,LOC107665847 non-coding upstream 80589 15057215 ~ 15057675 (+)
G42637 txlng non-coding upstream 83384 15017800 ~ 15054880 (+)
G42636 npepps,LOC107098842,LOC102793525 non-coding upstream 118729 15014943 ~ 15019535 (+)
G42633 NA non-coding upstream 127290 15010480 ~ 15010974 (+)
G42763 NA non-coding downstream 23319 15164715 ~ 15165694 (+)
G42807 NA non-coding downstream 236605 15378001 ~ 15378608 (+)
G42810 NA non-coding downstream 273281 15414677 ~ 15415189 (+)
G42813 NA non-coding downstream 279316 15420712 ~ 15421122 (+)
G42814 NA non-coding downstream 279756 15421152 ~ 15421453 (+)
G42605 NA other upstream 239016 14895062 ~ 14899248 (+)
eps15l1 eps15l1 other upstream 1003718 14070423 ~ 14134546 (+)
LOC103037142 LOC108429501 other upstream 1280903 13810833 ~ 13857361 (+)
LOC103034435 NA other upstream 1516222 13617083 ~ 13622042 (+)
LOC103032215 NA other upstream 1616007 13509020 ~ 13522257 (+)
LOC103036127 cunh19orf24 other downstream 837090 15978486 ~ 15984632 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other downstream 1299535 16440931 ~ 16446287 (+)
LOC103044285 NA other downstream 1675205 16816601 ~ 16819251 (+)
LOC111192574 NA other downstream 1806984 16948380 ~ 16950360 (+)
dda1 dda1,LOC105913185,LOC107685208,LOC105012003 other downstream 1871071 17012467 ~ 17017856 (+)

Expression


Co-expression Network