atp5b (atp5b,LOC107723059,LOC100693141,LOC102199207)


Basic Information

Item Value
gene id atp5b
gene name atp5b,LOC107723059,LOC100693141,LOC102199207
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 15252915 ~ 15257121 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240168.3
ATGTTAGGAGCTGTGGGACGCTGCTGCACCGGGGCTCTGCAGGCGCTGAAGCCCGGGGTTAGCCCCCTGAAGGCTTTCACTGGAGCTCCAGCGGCGCTCTTCTCTCGCCGGGATTATGCTGCTCCCGCCGCGGCCGCCGCTACAGCCAACGGAAAGATCGTTGCTGTCATCGGTGCCGTGGTCGACGTCCAGTTCGACGAGGGCCTGCCCCCAATCCTGAATGCCCTGGAAGTGGCCGGCCGTGACACCAGGCTAGTCCTGGAGGTGGCTCAGCACCTTGgggaGAACACTGTCCGCACCATTGCTATGGATGGTACCGAGGGTCTGGTGCGTGGCCAGAAAGTTCTTGACACTGGTGCCCCCATCAGGATCCCTGTGGGACCCGAGACGCTGGGCAGAATCATGAATGTCATTGGCGAGCCCATTGATGAGCGAGGACCAATCACCACAAAAACaaCTGCTCCCATCCACGCTGAGGCCCCTGAGTTCACGGACATGAGTGTGGAACAGGAGATTCTGGTCACAGGAATCAAGGTGGTGGACCTCCTGGCCCCCTATGCCAAGGGTGGAAAGATTGGTCTGTTCGGTGGTGCCGGAGTAGGAAAAACTGTATTGATCATGGAGTTGATCAACAATGTGGCTAAAGCCCATGGTGGTTACTCAGTGTTTGCTGGTGTGGGGGAGAGGACCCGTGAGGGAAACGATCTGTACCATGAAATGATTGAGTCTGGTGTCATCAACCTGAAGGACACCACATCCAAGGTCGCCCTGGTATACGGACAGATGAACGAGCCCCCAGGCGCTCGTGCCCGTGTGGCTCTGACTGGACTGACCGTTGCCGAATATTTCCGTGATCAGGAAGGACAGGATGTGCTGCTCTTTATTGACAACATCTTCCGATTCACCCAGGCTGGATCAGAGGTGTCTGCTCTGCTGGGTCGTATCCCCTCTGCTGTGGGTTATCAGCCAACTCTGGCCACTGACATGGGTACCATGCAGGAGAGAATCACCACCACAAAGAAGGGCTCAATCACATCTGTACAGGCCATCTATGTGCCTGCTGATGACTTGACTGACCCTGCCCCTGCCACCACCTTTGCTCACTTGGACGCCACCACTGTGTTGTCCCGTGCTATTGCTGAGCTGGGTATCTACCCTGCTGTGGATCCCCTTGATTCCACCTCCCGTATCATGGACCCCAACATTGTGGGAACTGAGCACTACGATGTTGCTCGTGGTGTCCAGAAGATCCTTCAGGACTACAAGTCTCTGCAGGATATCATTGCTATCCTGGGTATGGATGAGTTGTCTGAGGAAGATAAGCTGACTGTAGCCCGTGCCCGTAAGATCCAGAGATTCCTTTCCCAGCCCTTCCAGGTGGCTGAGGTCTTCACTGGTCACTTGGGCAAGCTGGTGCCCCTCAAGGATACAATCAAAGGCTTCAAGAGCATTCTAGGAGGTGAGTATGATGCACTGCCTGAGCAGGCTTTCTACATGGTGGGTCCCATTGAGGAGGTTGTCCAGAAGGCAGAGAAACTGGCTGAGGAGCATTCATAAACATTTTTGTCAAACAAATGTCTGGGCTGGGTTGGAAAagatgaagctggaaagggagGAGCACTTGGTTTGTAAAGTAACATTCAAAAACAATTGTACCTGTATTAGTCATCCTGGAGTTCTATTTAATGTTTCCAATTTAAGATGGAAATAAATCTGTCTTTACCATGGA

Function

symbol description
atp5b Predicted to enable several functions, including adenyl ribonucleotide binding activity; angiostatin binding activity; and proton-transporting ATPase activity, rotational mechanism. Predicted to contribute to proton-transporting ATP synthase activity, rotational mechanism. Acts upstream of or within cellular response to interleukin-7; lipid metabolic process; and negative regulation of cell adhesion involved in substrate-bound cell migration. Located in mitochondrion. Is expressed in several structures, including alimentary system; central nervous system; eye; heart; and integumental system. Orthologous to human ATP5F1B (ATP synthase F1 subunit beta).

NR:

description
ATP synthase subunit beta, mitochondrial

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) cellular_component
GO:0005524 ATP binding molecular_function
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function

KEGG:

id description
K02133 ATPeF1B, ATP5B, ATP2; F-type H+-transporting ATPase subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240168.3 True 1729 mRNA 0.54 10 15252915 15257121

Neighbor

gene id symbol gene type direction distance location
mknk1 mknk1 coding upstream 18530 15227150 ~ 15234385 (+)
LOC103027889 mob3c,LOC103027889,LOC108438648,LOC108270829,LOC106574029,LOC106613547 coding upstream 27745 15213259 ~ 15225170 (+)
LOC103027567 LOC108438649,LOC108270756 coding upstream 82277 15143469 ~ 15170638 (+)
LOC103026176 bt3l4,btf3l4,LOC103026176,LOC105028135,LOC107562065 coding upstream 111519 15138264 ~ 15141396 (+)
ptgfr ptgfr coding upstream 116506 15130977 ~ 15136409 (+)
LOC103028308 abcb11,abcb11b,LOC108438644,LOC107692229,LOC107602798,LOC108270741,LOC105911976,LOC103354593 coding downstream 18305 15275426 ~ 15296603 (+)
LOC103028625 NA coding downstream 99691 15356812 ~ 15376156 (+)
LOC103030416 LOC103030416,LOC108438642 coding downstream 126689 15383810 ~ 15403511 (+)
LOC111192508 NA coding downstream 147861 15404982 ~ 15413569 (+)
arrdc2 arrdc2,LOC108438640,LOC107753823,LOC107692233,LOC107656095 coding downstream 160211 15417332 ~ 15426995 (+)
G42756 LOC108438650,LOC108270818,LOC107656106,LOC107753833,LOC107562086,LOC107602768,LOC107723066 non-coding upstream 60945 15102476 ~ 15191970 (+)
G42763 NA non-coding upstream 87221 15164715 ~ 15165694 (+)
G42648 txlng non-coding upstream 191468 15058618 ~ 15061447 (+)
G42647 txlng,LOC107665847 non-coding upstream 195240 15057215 ~ 15057675 (+)
G42637 txlng non-coding upstream 198035 15017800 ~ 15054880 (+)
G42807 NA non-coding downstream 120880 15378001 ~ 15378608 (+)
G42810 NA non-coding downstream 157556 15414677 ~ 15415189 (+)
G42813 NA non-coding downstream 163591 15420712 ~ 15421122 (+)
G42814 NA non-coding downstream 164031 15421152 ~ 15421453 (+)
G43035 NA non-coding downstream 778077 16035198 ~ 16037119 (+)
G42605 NA other upstream 353667 14895062 ~ 14899248 (+)
eps15l1 eps15l1 other upstream 1118369 14070423 ~ 14134546 (+)
LOC103037142 LOC108429501 other upstream 1395554 13810833 ~ 13857361 (+)
LOC103034435 NA other upstream 1630873 13617083 ~ 13622042 (+)
LOC103032215 NA other upstream 1730658 13509020 ~ 13522257 (+)
LOC103036127 cunh19orf24 other downstream 721365 15978486 ~ 15984632 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other downstream 1183810 16440931 ~ 16446287 (+)
LOC103044285 NA other downstream 1559480 16816601 ~ 16819251 (+)
LOC111192574 NA other downstream 1691259 16948380 ~ 16950360 (+)
dda1 dda1,LOC105913185,LOC107685208,LOC105012003 other downstream 1755346 17012467 ~ 17017856 (+)

Expression


Co-expression Network