ptbp1 (ptbp1,ptbp1b,LOC107753809,LOC107723850,LOC107602808,LOC107674525)


Basic Information

Item Value
gene id ptbp1
gene name ptbp1,ptbp1b,LOC107753809,LOC107723850,LOC107602808,LOC107674525
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 15963205 ~ 15976673 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240193.3
GTCCGCCTCAGCGCGCTCCGCCATTTTGTCGGGCTATAAGAAAACTCAGCCAAGCAGCAAAGTTCCTGATTAGAGCCGAAGTTCCTCTTTGTGCAATGGACGGCCGCCTAGAGACTGAATTGTATCCTATGGGATCGAGTTACGCAGAATTAGATGTTGTCCATGACATTGCAGTTGGTACCAAGAGAGGATCAGACGAGCTTTTCTCCTGTGTTTCCAACGGGCCCTATATCATGAGTTCACCAGCTAATGGTAACGACAGCAAGAAATTCAAAGGTGACATCAGAAGTCCTGGTATTCCGTCTCGTGTCATACATGTACGTAAGCTTCCCAGTGATATCAATGAGGCAGAGGTCATCTCTCTAGGCCTTCCCTTTGGCAAAGTCACCAACCTGCTCATGCTGAAAGGAAAGAACCAGGCTTTCCTTGAGATGAACACAGAAGAGGCAGCGCAGACTATGGTCAGCTACTACTCCTCAGTCACACCAGTCATCAGGAATCATCCCATTTTCATGCAGTATTCCAACCACAAGGAGCTGAAAACGGATAATTCACCAAACCAAGTGAGAGCACAGGCAGCACTGCAGGCTGTTAATGCAGTCCAGACAGGTAGCATGGCTATTGCTGGTGTTGACCCCTCTGGTGTGACTGGCCCCAGCCCTGTTCTCAGAGTCATTGTGGAGAACCTTTTCTACCCAGTGACTCTTGATGTCCTCCACCAGATCTTTTCCAAGTTTGGCACAGTGCTAAAGGTGATTACCTTTACCAAAAACAACCAGTTCCAAGCTCTTCTACAGTTTGCCGATGGTCTTACTGCTCAGCATGCAAAGCTGGCCCTGGATGGACAGAACATCTACAATGCCTGCTGTACTCTGCGCATAAGCTTTTCCAAACTAACAAGTTTGAATGTAAAATACAACAATGACAAGAGTCGGGACTACACACGACCTGATCTGCCCACAGGGGACAGTCAGCCTGCTATTGAACACCATGCAATGGCAGGTGCTGCCTTTGCCACACCTGGAATTATTTCTGCTGCCCCATATGCTGGTGCCCATGCGTTTCCACCTGCCTTTGCCTTTCAACAGGCTGCAGGATTGACCATGCCTGGTGTTCCAGGAGCCCTAGCCTCTCTGGCTATCCCTGGGGCTGCCGCAGCTGCAGCGGCAGCAGGCAGACTGGGCTTCCCCACCCTCTCCGGTGGTCACTGTGTTATGCTGGTTAGCAACCTGAACCCTGAGAGAGTTACGCCCCAATGCCTCTTTATTCTTTTCGGTGTATATGGGGATGTGATTAGGGTGAAAATCATGTTCAACAAAAAGGAGAATGCTCTGGTTCAGATGTCTGATGGAACTCAAGCTCAACTAGCAATGAGCCATTTGAATGGCCAGAAGTTGTATGGGAGGGCATTGCGCATAACATTATCCAAACACACAACTGTTCAGCTGCCTCGTGAGGGACATGAGGACCAGGGGCTTACAAAGGATTACAGCAACTCTCCCCTTCATCGCTTTAAGAAGCCTGGTTCCAAGAACTACTCTAACATCTTCCCGCCATCATCAACGCTGCATCTTTCTAATATCCCGCCCTCAGTTGTTGAAGACGATCTCAAGATGCTGTTCTCCACTTCTGGAGCCTTGGTCAAGAACTTCAAGTTCTTTCAGAAAGATCGTAAGATGGCATTGATTCAGATGGGTTCTGTGGAAGAAGCAATCGAGTCTCTCATTGAGTTCCATAACCATGATCTCGGCGAGAACCACCATCTTCGGGTGTCTTTTTCCAAATCCACCATTTAAAAGAGAAGAGGcggattttaaaaaagaaaaaaaaaagactgatatAAGGCTGGAATGACCAGTCATGTACAAACATTAAAGTTGAGATCACCTCAGTGTCTAAGTCTCAACCACAAGTCACACTTCCAGCATTCCTCTGTTGTATTTATGAAGTATATGTagtggttcttttttttcttttttttttttaaagcatttaatgtCTGTGAGGACTATCAATATCCATCTTTTGCCCATTTTAATAAGCTGATAAGCCTTTTGTTCAAATTTGCTTTAATCACTTGTATTACAGATGCCATTACAGGCATTAGTCACTTAAAAGTACAGCTCTGCTTTTTCCGGAGGTGCTTCTTGTGCCttactcttactttttttttttttttttttttttaaatccttacTCTTCTTATTCTGAGActataaataatgatttctaatgtgaaatcaatattttgtaaaattgtaGTTTACATTCCAGTTGTGTACAGGTTTTCATCCCGATGTCCATGAAGTTAAaggctatgttttttttttttttcttcagctaCTGGGCATTAAGAAAATTCATGTTACCTGGTCTGGACCACAGGCTATCTCTATAGGCCCAGTCCTTGTTTCCTCttacatatactgtatctatagaCATAGAATGTTTACACATGCTCTCTTTAATTTAATGCAATCATTTGTGTAAAATACCACATTTTAcgtatattttgtttttatacgGTTGGCTATTGCATGTTGGCCTCTGGTCAGTAGAGCCCATTCTACTACTGTGCCTATGCTCTTTTTCTGTACCTTGCATAGATCTTAAGTGACATCATGTATCTCATGATTTTCTATGTTTTATAACTATTCTATTGTAATTCTCAGTATATTTTATGTACTCttgtagcttttttttatatgtacacTACAGCTTGAAACCAAAGGCTTTGTGCGACTTCTTATTATCATAAGGGGACAAATGTTTATTCCtaccatttttttactttttcaaatgACCAGTTTAAATTTCTGTAAAAGATGGATGGGTGGAGGAGTTGAGTATATTTAGTGGCTTGGAATTCCCCtgtataattgtttatattCTATCAGTCAGCACTGGTGTGtgctttttcttattctttgtaTAGTATATTACattaagtttggctgtgggctatatttcattataacatacatatttacaatacaatataaatggTTATTTTTTGGCACTGCCTTTTTGTGCTGTTATCAAGGTAGCAGgtttttttaaatctctgcATGGGACCAATGTGGTGAAATTCCTGAAAGAAGGAATTTGCCTTTTATATTTCAAACTAAATGCTGGAATTTGATATTTCTCATGTgcaagaaaaatgtatattaaaagaaaaaatggagaAGGTGTAAAATTCAGACAATATTGCTGTGCGGTTTGGAAATTAGCAGGACTTATGCAGCCTTACACAGCATTTGACTGACCTCAGTACACATAATTTGCCTTTAATGGTTTAATGCTTTCCCCCCTTAAAGTGGATAGATGAggtgtaaatattatttttgtacggcaatataaaaagcaatagggtttttttttctttttaaaagtcTGAAAGCAGATGTATATTTTGATTACAGCTGTGGACCatgaacatgcaaaaaaaaaaatcatgaaaaaatagGGTTACACGGTCTTCAAAATCTTTACCTTAACATTCCTTTTGGAGAGTGTACTTTTGATTATGTTGCCTTCATTAAACACTTGTTTACTcaga

Function

symbol description
ptbp1b Predicted to enable mRNA binding activity. Predicted to be involved in regulation of RNA splicing and regulation of cell differentiation. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be active in nucleus. Is expressed in several structures, including EVL; axis; mesoderm; nervous system; and pronephric duct. Orthologous to human PTBP1 (polypyrimidine tract binding protein 1).
ptbp1 Enables pre-mRNA binding activity. Involved in several processes, including IRES-dependent viral translational initiation; positive regulation of calcineurin-NFAT signaling cascade; and regulation of mRNA splicing, via spliceosome. Located in extracellular exosome and membrane.

NR:

description
polypyrimidine tract-binding protein 1

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K13218 PTBP1, PTB; polypyrimidine tract-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240193.3 True 3562 mRNA 0.41 16 15963205 15976673

Neighbor

gene id symbol gene type direction distance location
LOC103035507 LOC108437275 coding upstream 5444 15948996 ~ 15957761 (+)
misp NA coding upstream 18009 15931709 ~ 15945196 (+)
palm palm coding upstream 33364 15866704 ~ 15929841 (+)
plppr3 plppr3,LOC107753813,LOC107593129,LOC107602805,LOC107656087,LOC107723853 coding upstream 111951 15828368 ~ 15851254 (+)
med16 med16,LOC107723868,LOC107753817,LOC107656090 coding upstream 136701 15805602 ~ 15826504 (+)
LOC103036428 efna2,LOC108270832,LOC107674568,LOC106574064,LOC107602810 coding downstream 77986 16054659 ~ 16200071 (+)
LOC103036728 si:ch73-60h1.1,LOC103036728,LOC108437280,LOC107602811,LOC107723863,LOC108270791,LOC107674560,LOC107656080 coding downstream 339914 16316587 ~ 16352239 (+)
LOC103037033 LOC108437281,LOC108270814,LOC107723845 coding downstream 382044 16358717 ~ 16365153 (+)
thop1 thop1,LOC107658499,LOC107568058,LOC107592556 coding downstream 422871 16399544 ~ 16412008 (+)
LOC103039257 NA coding downstream 437530 16414203 ~ 16434080 (+)
G42814 NA non-coding upstream 541752 15421152 ~ 15421453 (+)
G42813 NA non-coding upstream 542083 15420712 ~ 15421122 (+)
G42810 NA non-coding upstream 548016 15414677 ~ 15415189 (+)
G42807 NA non-coding upstream 584597 15378001 ~ 15378608 (+)
G42763 NA non-coding upstream 797511 15164715 ~ 15165694 (+)
G43035 NA non-coding downstream 58525 16035198 ~ 16037119 (+)
G43063 NA non-coding downstream 275258 16251931 ~ 16253694 (+)
G43062 NA non-coding downstream 275550 16252223 ~ 16261729 (+)
G43097 sgta,LOC106613600 non-coding downstream 414757 16391430 ~ 16398266 (+)
G43136 NA non-coding downstream 538984 16515657 ~ 16530444 (+)
G42605 NA other upstream 1063957 14895062 ~ 14899248 (+)
eps15l1 eps15l1 other upstream 1828659 14070423 ~ 14134546 (+)
LOC103037142 LOC108429501 other upstream 2105844 13810833 ~ 13857361 (+)
LOC103034435 NA other upstream 2341163 13617083 ~ 13622042 (+)
LOC103032215 NA other upstream 2440948 13509020 ~ 13522257 (+)
LOC103036127 cunh19orf24 other downstream 1813 15978486 ~ 15984632 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other downstream 464258 16440931 ~ 16446287 (+)
LOC103044285 NA other downstream 839928 16816601 ~ 16819251 (+)
LOC111192574 NA other downstream 971707 16948380 ~ 16950360 (+)
dda1 dda1,LOC105913185,LOC107685208,LOC105012003 other downstream 1035794 17012467 ~ 17017856 (+)

Expression


Co-expression Network