LOC103036428 (efna2,LOC108270832,LOC107674568,LOC106574064,LOC107602810)


Basic Information

Item Value
gene id LOC103036428
gene name efna2,LOC108270832,LOC107674568,LOC106574064,LOC107602810
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 16054659 ~ 16200071 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240195.3
CGCACACAGTGAGCTCGAGCTGAGGGGGAGCGGAGTGGAGTGGGAAAGAAAGCGCGGTCGGTTGGACGGCTGGTTGGGTTTTAGCTCAGAGTGCGGAGCCGCTGAGTGGAGGAGGCGGCAGCGGCGGAGGAACAGAGAAACTCGGCGTGGCGGAGAAACGGAGAGACCCGCGGGCAGAAGTTGTGTGAGTGATGCGGTGTCCCCCCTCACCCTCCCCTCCCCCTCGGTCCCCTCAGCCCTGCGTGGAGATTTGGCAGCGAGCCGGAGAGGGAGCCCTCACCCACAGACCCTCCTCTCAGGAGCGGAGCAGGAGGCAACTTTCAAACGGCAACTTCTTCTCAGCGACAGCGAGGAGCTCCGGGAGGAGGTGGACGGTACGCGCGGAGTAACGTTAGCAGCTGGCGGGGAAGGCGGCGGTTTCACTCACTCGTGGACTGTTAAGGCTGTCtttcattctgtttttgttgtgtttttttgctcCTTCCTTCTGTGAGGATATTTTGCTCGGAGCGCTGGGTCTCCAGAAACCCACGCGGCTTTCACTCACTCTGTTCCCGCGGTGGAGCAACTTCAGCCCGGCGTGGCGCTGAGTTTGGGACGCGCTCGGTTGAACTGGCTACTGGCTTGTTAAAGCTACTACTTCACTTCAGTTCACCCGCAGAAAAATAGACGGACATGTGGAGTAGGAATAGGTAGTTAATTAACCAAATAAGCTACCTAAGTAAAGAAGGACGGAGcgaggaaagaaaaagaagggaaGGAGAAAAGAAAGGAGTGAGGAAGGAGTGTGGTTCGCTGGAGCGCTTTAACGTTATCTAAGCTAACTAACTCTCTACCTACCGAGCTCTAAGAGAATGGATGAACGGGGCTCCTCAGAGCGGCCAGCTTTATCAGCCTTCACGTCTCAAGGCTGAAGAAAGTTTTCAGAAgtgattatttttgttgttttactggAGAATGGATTTCAGAGGGCTGCTCCTGGACTCAAGGCAGCTGGCTAATGAGATGAGATGTTCTTAAAGGACCTGCTTTCTTTCATTGACTggattttatcattattataaacCTAATTTAGATAGTGGGCATGGGAGCCCTCTCTCTGTGTGAAGTTGGTCAAAGCCTGTGGTGAGTCGCCTATGAGGTCTGAATGAATGTAAACAGCTCCAGCTGTACTCTGTATGTcactagctaagctagttagatCACTAGCTTACTCTTCTATAGCTTCAGCCTCGGCTTCCTTCATCCACACACCTGAATGTGATGTTAGCCATCAAATACAATAGCTAGCGCTTCATTCATAACAACAGAAGAAGCAGAGACTACAGACAGAACTAttgtaacaacaaaaataatataatataataatattgacaTTTTCTAAAGGATCACACATACTTGTGTTTACACATACAAAAacgtttctgttttttatttttgtttttgtctccaAATATTTGTTTCATATTTGGAGTTTATTTGATCCCCTCTCAAggcaactctctctctctctcgcctttGAACACAATGGACAAAAACTGCATTGCCTATCAAATGGAGTTGACACTTTTGATGGTTGCCCTCCTGTTTTGGGTCACGGTTTGGGCGGACGACAGCAAGATCATTTCAGACAGATATGCTGTATACTGGAACAGCACGAATCCCAGGTTTGTACACGGGGAGTACACAGTGGAGGTCGCCATCAACGACTACCTGGACATCTACTGCCCACACTACGAGGTGCCACTGCCACAGGAACGCATGGAGCGCTACGTCCTTTACATGGTCAGCTATGACAGCTACATCACCTGCAACCACCTCATCAAGGGCTTCAAACGCTGGGAGTGCAATCGGCCTCTGAGCCCCAACGGGCCGCTCAAGTTCTCGGAGAAGTTCCAGCTCTTCACGCCATTTTCCCTGGGCTTCGAGTTCCGCCCGGGCCACGAGTACTACTACATCTCCTCCCCACATCCAAACCTTGCTGGGAAGCCTTGCTTGAAGTTAAGAGTGTATGTCAAGCCCACAAaCGACTCTGTGTACGAGTCTCCAGAGCCGTTTCTGACGGACGACACCAACGACGGCCGTTCGCTGGCCCCCTGTGTCTCTCTGCTCCTGGTTATGCTCCTGCTGATGCTCAGCCCCTCCTAGCACAGCAGCCCACCCAGCGCAGCTCCAAACCCAGCCTAGCCTGAAGCTCACCGCCCCCCCCCCAATACAGCGCCAGCTAGCCACCTACAGCTATTACCACCACACCACCAAGTCCATCTCTACACCGTCTGACCACCATCACCACTGAACTCCCATCTCCACCTCCACAGAACACACTTCATCATAAGGGTCAGCCTACGAGAAAAGACGATATTGCAACCCTTTGCTTTCCCATCATGCACCGATGTGTTTAACCCCTATCATCCTCCTCTGAGATTTCAGAGTGATTTCTGCTTGTTTCACACGTCTCTGAGCTCTTCTATCAGTGTGTTCTGAATACACGCCAGCTGTCTGAACCGCTGCTGTTCATTCTGTAGTTTGGTACATGTtcacatttacttttttctcaagacaaactgtttgtttttatttttttctgttttcgtTTTTAAAGTAGTGTgagagaatgtgtgtttttgcaagGTAAGCATTTTTTCTGCCTTTCACTAAGAAATCCCCGACGCCatttctggaaaaataaaaaaaatccattagtCTTTCAGAGTAGAAAATACTCTTTTTCTGTGAATCTGCCAAAGACACTAGTTTAACTTTTATATAGGGAAGGGGAGCGGAAAGCTTTGGCTTTGGTTCAAGATCACACGCAGCCAACAGGGCTTTGCCGGCACGGGAGGGGAAATGCGTCATGAAACGAAAgtgtagaatttttttattacaatttttttgtcatacaaataaaaagaaaaagaatgttGAGTagattcaaaaaaaaaaaaaaaagttacaaatgGCCTTTTTTCACTGGTGCTCAATCTGCAAACGAATCTGTCTGTCACAAAGCTACAGTGCCAAGTGGAAGGGGGGCATGCTGTGTTTGGTGaagtgtgtattttgtgtatttcaGGTCTTTTCTCTCGTCTCAAgacctttctctctttctctagatctctcgctttctctttctattaGTCTCTTTTCTGTCCATTTCTTAAATGTGGTGTTTTTTCTATGTGACAAGCAGCTCCACATAGATCTCCTACAACTGCACTAAGCCCCCCACTCCCAGCCCACCCcacagaaattattatttttttttttcttttaattttgctAAAGATGTGAGCAACAGGCCTGGAGAGCAAAGGCCACTGGACTCCGAACAAGCTGGTCACTGTGAAACTGGATGACCaaggctttttatttttattattttgtcgcTTTGAAACGACTCCACtatgagagagaaaagagcgCAAGCGGATGCCTCAAAACTCTAATTGTGTGGGGGGTTATGGGGTTACGAATTCAAGTAGCACTATCGCTTCAATGGACGCTTTCATTATGGAAaacaagaagaagagaaaaaataaaaggcgGGATTATGCGTGTGGTTGAATTATTGtgactgtacaaaaaaaatgttattaaaaaaaaaatgatttcggGGAGAGCCGACGTCAAAAATCGGAAAGATTGAAAAATGAATGACGTCTTTTTGTTAGTTGgaacttttatattttactttattccatgttattttttactttaattttcaaaaaaaataaataaaaaaagcagtggACATTATTCATATGTGATATGAAATTATAATGTAGACCCTCAATTTACTAGAGCAATGATGGTACGAGTTCTGCAGTTGAACAAGTCTAGAGAAGTCAAGAtgtttgctattgttgttgtttcctGCTTGTATCACATTCTGGTACTTGTAGTCctgtaatgatttttttttcctcctcattTCCAGTACAAAAACCTTTCATGGTGTTCTTATCAGatcatttttatttggtaatcATGTGGAGAAAACTATTTGCGTTCCTGTTCAATGTTCCAATGTTTCGGAAGAGGAAAGCTacaggaaaaaatgaaaataaagctttttttgtgtATCGCA

Function

symbol description
efna2 Predicted to enable ephrin receptor binding activity. Predicted to be involved in several processes, including bone remodeling; ephrin receptor signaling pathway; and osteoclast differentiation. Predicted to be located in neuromuscular junction and perikaryon. Predicted to be anchored component of membrane. Predicted to be active in plasma membrane.

NR:

description
ephrin-A2

GO: NA

KEGG:

id description
K05462 EFNA; ephrin-A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240195.3 True 4087 mRNA 0.45 4 16054659 16200071

Neighbor

gene id symbol gene type direction distance location
ptbp1 ptbp1,ptbp1b,LOC107753809,LOC107723850,LOC107602808,LOC107674525 coding upstream 77986 15963205 ~ 15976673 (+)
LOC103035507 LOC108437275 coding upstream 96898 15948996 ~ 15957761 (+)
misp NA coding upstream 109463 15931709 ~ 15945196 (+)
palm palm coding upstream 124818 15866704 ~ 15929841 (+)
plppr3 plppr3,LOC107753813,LOC107593129,LOC107602805,LOC107656087,LOC107723853 coding upstream 203405 15828368 ~ 15851254 (+)
LOC103036728 si:ch73-60h1.1,LOC103036728,LOC108437280,LOC107602811,LOC107723863,LOC108270791,LOC107674560,LOC107656080 coding downstream 116516 16316587 ~ 16352239 (+)
LOC103037033 LOC108437281,LOC108270814,LOC107723845 coding downstream 158646 16358717 ~ 16365153 (+)
thop1 thop1,LOC107658499,LOC107568058,LOC107592556 coding downstream 199473 16399544 ~ 16412008 (+)
LOC103039257 NA coding downstream 214132 16414203 ~ 16434080 (+)
c5h19orf25 cunh19orf25 coding downstream 246649 16446720 ~ 16449054 (+)
G43035 NA non-coding upstream 17540 16035198 ~ 16037119 (+)
G42814 NA non-coding upstream 633206 15421152 ~ 15421453 (+)
G42813 NA non-coding upstream 633537 15420712 ~ 15421122 (+)
G42810 NA non-coding upstream 639470 15414677 ~ 15415189 (+)
G42807 NA non-coding upstream 676051 15378001 ~ 15378608 (+)
G43063 NA non-coding downstream 51860 16251931 ~ 16253694 (+)
G43062 NA non-coding downstream 52152 16252223 ~ 16261729 (+)
G43097 sgta,LOC106613600 non-coding downstream 191359 16391430 ~ 16398266 (+)
G43136 NA non-coding downstream 315586 16515657 ~ 16530444 (+)
G43163 vmac,LOC107680554 non-coding downstream 502179 16702250 ~ 16704192 (+)
LOC103036127 cunh19orf24 other upstream 70027 15978486 ~ 15984632 (+)
G42605 NA other upstream 1155411 14895062 ~ 14899248 (+)
eps15l1 eps15l1 other upstream 1920113 14070423 ~ 14134546 (+)
LOC103037142 LOC108429501 other upstream 2197298 13810833 ~ 13857361 (+)
LOC103034435 NA other upstream 2432617 13617083 ~ 13622042 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other downstream 240860 16440931 ~ 16446287 (+)
LOC103044285 NA other downstream 616530 16816601 ~ 16819251 (+)
LOC111192574 NA other downstream 748309 16948380 ~ 16950360 (+)
dda1 dda1,LOC105913185,LOC107685208,LOC105012003 other downstream 812396 17012467 ~ 17017856 (+)
G43360 apba3,si:ch73-40i7.5,LOC108271288,LOC105910839,LOC107750992 other downstream 993467 17193538 ~ 17196116 (+)

Expression


Co-expression Network