LOC103037033 (LOC108437281,LOC108270814,LOC107723845)


Basic Information

Item Value
gene id LOC103037033
gene name LOC108437281,LOC108270814,LOC107723845
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 16358717 ~ 16365153 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240197.3
CGTCTGATCACATCCGGTATCAGCGGCTGCATTGTTACAGCGCGGGTGAAGCAGTTCAGTCCAGCTCTGTCTCTCAGCCGGTGTGAAGCGCAGCGTGTACAGTGTCTATCTCTGTAACGACAAGGAGTTAagACTTGCTACTTTCCAGTATCTACATGGCTGTTAGAAGGGGACACATTAGATACCTGAAGGTCTGTGAGGTCCAGAGCCAAGGGATTGACAGAGACTCACAGCATAGCAAGGGTGCCAGCTCAATGAAGGTGGACGCTTACGACATGCCCAACGGTTACGAAGACCACATGGGGGACGATGCAAAAGATGCCAAGACAAACTTGATTGTCAATTACCTGCCACAGAACATGACGCAGGAGGAGCTGCGTAGTCTGTTCAGCAGCATTGGCGAGGTGGAGTCTGCCAAACTTATTCGGGATAAAATGGGAGgCCACAGTTTAGGGTACGGATTTGTTAACTATGTTAACACTAGTGATGCAGAAAGGGCAATCAGTACTCTCAATGGGCTGAGACTACAGTCTAAAACTATCAAGGTTTCTTATGCAAGGCCGAGCTCTGACACAATCAAAGATGCCAATCTTTACATTAGTGGTTTGCCCAAGACCATGACCCAGAAAGATGTGGAAGACATGTTTACCCGCTATGGACGGATCATAAACTCTCGGGTGCTGGTTGATCAGGCCTCAGGCTTGTCACGTGGAGTTGCCTTCATCCGGTTTGATAAGAGGGCTGAAGCAGAAGATGCCATCAAAGGTCTTAATGGTCAGAAACCTTCTGGAGCTTctgaaccaatcacagtcaagTTTGCAGCTAACCCCAATCAAGCAAAGAACTCCCAGCTGCTGTCCCAACTCTACCATACACAGTCTCGGCGCTTTGGAGGCCCTGTTCATCATCAAGCCCAGAGGTTCCGGTTTTCACCAATGAGTGTAGACCACATGAGTGGCATGTCTAGCATGAGTTCACCCGGGAACTCCACCTCTGGCTGGTGCATTTTCGTCTACAACCTGGGTCAGGATGCAGATGAGGGCATTCTGTGGCAGATGTTCGGTCCATTTGGAGCCGTCACCAACGTGAAAGTCATTCGCGACTTCAACACCAACAAATGCAAAGGGTTCGGGTTTGTTACAATGACAAACTACGAAGAGGCAGCCATGGCCATCGCAAGTCTCAACGGTTACCGCCTTGGGGACAAGATCCTACAAGTGTCGTTCAAAACCAGCAAGTCTCACAATTTTGAAGAGCCTTGTCCTTGCTAAATGAAGTGTCAAGGCAGTTTGTCTTCCATACAGTGGAATTGGTTGTCGCCCCGTACAGAGtgtgcgtgtttttttttttttttttgtgctttggcAATGGAGAATTTCAGTTTAGTGATAAGAATTCATATCTATACACTTTTAGTAGTGTAGTCCCATTACATCTctgtaaataacatttttagcCATTATTTGACGCTGGCTCAGTAAGAGAAGAGTAACTAATGAACACCATCTGTAGATCTATTAAACGTTTTATCTAACATGCATTAATATGCAAGACAATTTGTTGAGATTTATGATGTCTTGTAAATGTTTAATCCTTTTTCTCCATAATATGCATGTTGTTCATTCAGTACACGTAATAGCTTTGACATCACGCACCTTGTGTTTGTATGTCATGCAATGTCTACTTCAGAAGTATGGCCTAAGCTCCTGTAGTATGGGCCTTTTAtgtatttacaaataaatgccATTGGTTTTGttgtataaaata
>XM_007240198.3
CGTCTGATCACATCCGGTATCAGCGGCTGCATTGTTACAGCGCGGGTGAAGCAGTTCAGTCCAGCTCTGTCTCTCAGCCGGTGTGAAGCGCAGCGTGTACAGTGTCTATCTCTGTAACGACAAGGAGTTAagACTTGCTACTTTCCAGTATCTACATGGCTGTTAGAAGGGGACACATTAGATACCTGAAGGTCTGTGAGGTCCAGAGCCAAGGGATTGACAGAGACTCACAGCATAGCAAGGGTGCCAGCTCAATGAAGGTGGACGCTTACGACATGCCCAACGGTTACGAAGACCACATGGGGGACGATGCAAAAGATGCCAAGACAAACTTGATTGTCAATTACCTGCCACAGAACATGACGCAGGAGGAGCTGCGTAGTCTGTTCAGCAGCATTGGCGAGGTGGAGTCTGCCAAACTTATTCGGGATAAAATGGGAGgCCACAGTTTAGGGTACGGATTTGTTAACTATGTTAACACTAGTGATGCAGAAAGGGCAATCAGTACTCTCAATGGGCTGAGACTACAGTCTAAAACTATCAAGGTTTCTTATGCAAGGCCGAGCTCTGACACAATCAAAGATGCCAATCTTTACATTAGTGGTTTGCCCAAGACCATGACCCAGAAAGATGTGGAAGACATGTTTACCCGCTATGGACGGATCATAAACTCTCGGGTGCTGGTTGATCAGGCCTCAGGCTTGTCACGTGGAGTTGCCTTCATCCGGTTTGATAAGAGGGCTGAAGCAGAAGATGCCATCAAAGGTCTTAATGGTCAGAAACCTTCTGGAGCTTctgaaccaatcacagtcaagTTTGCAGCTAACCCCAATCAAGCAAAGAACTCCCAGCTGCTGTCCCAACTCTACCATACACAGTCTCGGCGCTTTGGAGGCCCTGTTCATCATCAAGCCCAGAGGTTCCGGTTTTCACCAATGAGTGTAGACCACATGAGTGGCATGTCTAGCATGAGTTCACCCGGGAACTCCACCTCTGGCTGGTGCATTTTCGTCTACAACCTGGGTCAGGATGCAGATGAGGGCATTCTGTGGCAGATGTTCGGTCCATTTGGAGCCGTCACCAACGTGAAAGTCATTCGCGACTTCAACACCAACAAATGCAAAGGGTTCGGGTTTGTTACAATGACAAACTACGAAGAGGCAGCCATGGCCATCGCAAGTCTCAACGGTTACCGCCTTGGGGACAAGATCCTACAAGTGTCGTTCAAAACCAGCAAGTCTCACAAGTAAAAGGACAAAAGTATTACTTTTGGGTTCTAAGAACTTACATATTGATTCTGTTGTTTttcgatatatatattttttgttcccCTCCCCTCGTCCACTTCTGTAAGTGACAGTGTCTTCATGAAAGTACTTGTGTTTTTGATCTTTAAGTAAATCTGTACATAGTGTTTAACTTGCTCTAGGAATAAACAACAATCCAATTGACTGAAAAATaagcttaaaatattttttaaatattataatattagtgTTCATCACAATATACAGAATATTGTGAAAACAAACGCTACAACCATCCATTGGATTTTCTGACCTGTACAAGTAtaattgttatttaatttaattatactaAAAAGCTTCAAAGACCAAGAATAGATACAATATaggaagttttattttattaacccCAGAGAGTAAAAGCTGCCATTGCTCTTTACTATTAGTTACATTGTGAGTTCCcagttgtttttttcctctcccCTCCCCTTCTTTTTCATGGGTGTTTTTTTCACTAATGGTTGTTTGGATATTGTCAAGTTCTGCACAATGAATTTCAATCTCTATGGTTCCTTTTTTGTCGAAtcagttttgctgttttcagtctaaaaaaaatgagtagCTTTAAACAGTTTCATCTTTTTTCACTTAATGGATATTGCAGATTTTGTtttgcagtaaaatacagaaatgtgCAAAATATAATCTCTGTAAATACCCACTACACCACCCATGTTTTCTGCAAAGAatctatttaaagttatttgagtttaaaaagGACCAAAGAAATTGGAAGCATTTAAGGCTATTTTGCTGTATTCCTTTTTtgtgttcagatttttttatatattaaagccTTTTGCATTTAAACAACTTGTTTCTTTTTATGGTTTACTCTTCTGCTGTAGCAAATTACTGAAAATGATGGagatttcctttgtttttctgttttctttcagTTTTGAAGAGCCTTGTCCTTGCTAAATGAAGTGTCAAGGCAGTTTGTCTTCCATACAGTGGAATTGGTTGTCGCCCCGTACAGAGtgtgcgtgtttttttttttttttttgtgctttggcAATGGAGAATTTCAGTTTAGTGATAAGAATTCATATCTATACACTTTTAGTAGTGTAGTCCCATTACATCTctgtaaataacatttttagcCATTATTTGACGCTGGCTCAGTAAGAGAAGAGTAACTAATGAACACCATCTGTAGATCTATTAAACGTTTTATCTAACATGCATTAATATGCAAGACAATTTGTTGAGATTTATGATGTCTTGTAAATGTTTAATCCTTTTTCTCCATAATATGCATGTTGTTCATTCAGTACACGTAATAGCTTTGACATCACGCACCTTGTGTTTGTATGTCATGCAATGTCTACTTCAGAAGTATGGCCTAAGCTCCTGTAGTATGGGCCTTTTAtgtatttacaaataaatgccATTGGTTTTGttgtataaaata
>XM_007240199.3
CGTCTGATCACATCCGGTATCAGCGGCTGCATTGTTACAGCGCGGGTGAAGCAGTTCAGTCCAGCTCTGTCTCTCAGCCGGTGTGAAGCGCAGCGTGTACAGTGTCTATCTCTGTAACGACAAGGAGTTAagACTTGCTACTTTCCAGTATCTACATGGCTGTTAGAAGGGGACACATTAGATACCTGAAGGTCTGTGAGGTCCAGAGCCAAGGGATTGACAGAGACTCACAGCATAGCAAGGGTGCCAGCTCAATGAAGGACGCTTACGACATGCCCAACGGTTACGAAGACCACATGGGGGACGATGCAAAAGATGCCAAGACAAACTTGATTGTCAATTACCTGCCACAGAACATGACGCAGGAGGAGCTGCGTAGTCTGTTCAGCAGCATTGGCGAGGTGGAGTCTGCCAAACTTATTCGGGATAAAATGGGAGgCCACAGTTTAGGGTACGGATTTGTTAACTATGTTAACACTAGTGATGCAGAAAGGGCAATCAGTACTCTCAATGGGCTGAGACTACAGTCTAAAACTATCAAGGTTTCTTATGCAAGGCCGAGCTCTGACACAATCAAAGATGCCAATCTTTACATTAGTGGTTTGCCCAAGACCATGACCCAGAAAGATGTGGAAGACATGTTTACCCGCTATGGACGGATCATAAACTCTCGGGTGCTGGTTGATCAGGCCTCAGGCTTGTCACGTGGAGTTGCCTTCATCCGGTTTGATAAGAGGGCTGAAGCAGAAGATGCCATCAAAGGTCTTAATGGTCAGAAACCTTCTGGAGCTTctgaaccaatcacagtcaagTTTGCAGCTAACCCCAATCAAGCAAAGAACTCCCAGCTGCTGTCCCAACTCTACCATACACAGTCTCGGCGCTTTGGAGGCCCTGTTCATCATCAAGCCCAGAGGTTCCGGTTTTCACCAATGAGTGTAGACCACATGAGTGGCATGTCTAGCATGAGTTCACCCGGGAACTCCACCTCTGGCTGGTGCATTTTCGTCTACAACCTGGGTCAGGATGCAGATGAGGGCATTCTGTGGCAGATGTTCGGTCCATTTGGAGCCGTCACCAACGTGAAAGTCATTCGCGACTTCAACACCAACAAATGCAAAGGGTTCGGGTTTGTTACAATGACAAACTACGAAGAGGCAGCCATGGCCATCGCAAGTCTCAACGGTTACCGCCTTGGGGACAAGATCCTACAAGTGTCGTTCAAAACCAGCAAGTCTCACAAGTAAAAGGACAAAAGTATTACTTTTGGGTTCTAAGAACTTACATATTGATTCTGTTGTTTttcgatatatatattttttgttcccCTCCCCTCGTCCACTTCTGTAAGTGACAGTGTCTTCATGAAAGTACTTGTGTTTTTGATCTTTAAGTAAATCTGTACATAGTGTTTAACTTGCTCTAGGAATAAACAACAATCCAATTGACTGAAAAATaagcttaaaatattttttaaatattataatattagtgTTCATCACAATATACAGAATATTGTGAAAACAAACGCTACAACCATCCATTGGATTTTCTGACCTGTACAAGTAtaattgttatttaatttaattatactaAAAAGCTTCAAAGACCAAGAATAGATACAATATaggaagttttattttattaacccCAGAGAGTAAAAGCTGCCATTGCTCTTTACTATTAGTTACATTGTGAGTTCCcagttgtttttttcctctcccCTCCCCTTCTTTTTCATGGGTGTTTTTTTCACTAATGGTTGTTTGGATATTGTCAAGTTCTGCACAATGAATTTCAATCTCTATGGTTCCTTTTTTGTCGAAtcagttttgctgttttcagtctaaaaaaaatgagtagCTTTAAACAGTTTCATCTTTTTTCACTTAATGGATATTGCAGATTTTGTtttgcagtaaaatacagaaatgtgCAAAATATAATCTCTGTAAATACCCACTACACCACCCATGTTTTCTGCAAAGAatctatttaaagttatttgagtttaaaaagGACCAAAGAAATTGGAAGCATTTAAGGCTATTTTGCTGTATTCCTTTTTtgtgttcagatttttttatatattaaagccTTTTGCATTTAAACAACTTGTTTCTTTTTATGGTTTACTCTTCTGCTGTAGCAAATTACTGAAAATGATGGagatttcctttgtttttctgttttctttcagTTTTGAAGAGCCTTGTCCTTGCTAAATGAAGTGTCAAGGCAGTTTGTCTTCCATACAGTGGAATTGGTTGTCGCCCCGTACAGAGtgtgcgtgtttttttttttttttttgtgctttggcAATGGAGAATTTCAGTTTAGTGATAAGAATTCATATCTATACACTTTTAGTAGTGTAGTCCCATTACATCTctgtaaataacatttttagcCATTATTTGACGCTGGCTCAGTAAGAGAAGAGTAACTAATGAACACCATCTGTAGATCTATTAAACGTTTTATCTAACATGCATTAATATGCAAGACAATTTGTTGAGATTTATGATGTCTTGTAAATGTTTAATCCTTTTTCTCCATAATATGCATGTTGTTCATTCAGTACACGTAATAGCTTTGACATCACGCACCTTGTGTTTGTATGTCATGCAATGTCTACTTCAGAAGTATGGCCTAAGCTCCTGTAGTATGGGCCTTTTAtgtatttacaaataaatgccATTGGTTTTGttgtataaaata
>XM_022669696.1
CGTCTGATCACATCCGGTATCAGCGGCTGCATTGTTACAGCGCGGGTGAAGCAGTTCAGTCCAGCTCTGTCTCTCAGCCGGTGTGAAGCGCAGCGTGTACAGTGTCTATCTCTGTAACGACAAGGAGTTAagACTTGCTACTTTCCAGTATCTACATGGCTGTTAGAAGGGGACACATTAGATACCTGAAGGTCTGTGAGGTCCAGAGCCAAGGGATTGACAGAGACTCACAGCATAGCAAGGGTGCCAGCTCAATGAAGGTGGACGCTTACGACATGCCCAACGGTTACGAAGACCACATGGGGGACGATGCAAAAGATGCCAAGACAAACTTGATTGTCAATTACCTGCCACAGAACATGACGCAGGAGGAGCTGCGTAGTCTGTTCAGCAGCATTGGCGAGGTGGAGTCTGCCAAACTTATTCGGGATAAAATGGGAGgCCACAGTTTAGGGTACGGATTTGTTAACTATGTTAACACTAGTGATGCAGAAAGGGCAATCAGTACTCTCAATGGGCTGAGACTACAGTCTAAAACTATCAAGGTTTCTTATGCAAGGCCGAGCTCTGACACAATCAAAGATGCCAATCTTTACATTAGTGGTTTGCCCAAGACCATGACCCAGAAAGATGTGGAAGACATGTTTACCCGCTATGGACGGATCATAAACTCTCGGGTGCTGGTTGATCAGGCCTCAGGCTTGTCACGTGGAGTTGCCTTCATCCGGTTTGATAAGAGGGCTGAAGCAGAAGATGCCATCAAAGGTCTTAATGGTCAGAAACCTTCTGGAGCTTctgaaccaatcacagtcaagTTTGCAGCTAACCCCAATCAAGCAAAGAACTCCCAGCTGCTGTCCCAACTCTACCATACACAGTCTCGGCGCTTTGGAGGCCCTGTTCATCATCAAGCCCAGAGGTTCCGGTTTTCACCAATGAGTGTAGACCACATGAGTGGCATGTCTAGCATGAGTTCACCCGGGAACTCCACCTCTGGCTGGTGCATTTTCGTCTACAACCTGGGTCAGGATGCAGATGAGGGCATTCTGTGGCAGATGTTCGGTCCATTTGGAGCCGTCACCAACGTGAAAGTCATTCGCGACTTCAACACCAACAAATGCAAAGGGTTCGGGTTTGTTACAATGACAAACTACGAAGAGGCAGCCATGGCCATCGCAAGTCTCAACGGTTACCGCCTTGGGGACAAGATCCTACAAGTGTCGTTCAAAACCAGCAAGTCTCACAAGTAAAAGGACAAAATTTTGAAGAGCCTTGTCCTTGCTAAATGAAGTGTCAAGGCAGTTTGTCTTCCATACAGTGGAATTGGTTGTCGCCCCGTACAGAGtgtgcgtgtttttttttttttttttgtgctttggcAATGGAGAATTTCAGTTTAGTGATAAGAATTCATATCTATACACTTTTAGTAGTGTAGTCCCATTACATCTctgtaaataacatttttagcCATTATTTGACGCTGGCTCAGTAAGAGAAGAGTAACTAATGAACACCATCTGTAGATCTATTAAACGTTTTATCTAACATGCATTAATATGCAAGACAATTTGTTGAGATTTATGATGTCTTGTAAATGTTTAATCCTTTTTCTCCATAATATGCATGTTGTTCATTCAGTACACGTAATAGCTTTGACATCACGCACCTTGTGTTTGTATGTCATGCAATGTCTACTTCAGAAGTATGGCCTAAGCTCCTGTAGTATGGGCCTTTTAtgtatttacaaataaatgccATTGGTTTTGttgtataaaata

Function

NR:

description
PREDICTED: ELAV-like protein 1 isoform X3

GO:

id name namespace
GO:0019013 viral nucleocapsid cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K13088 ELAVL1, HUR; ELAV-like protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240197.3 False 1767 mRNA 0.45 9 16358717 16365153
XM_007240198.3 True 2724 mRNA 0.40 8 16358717 16365153
XM_007240199.3 False 2721 mRNA 0.40 8 16358717 16365153
XM_022669696.1 False 1781 mRNA 0.45 9 16358717 16365153

Neighbor

gene id symbol gene type direction distance location
LOC103036728 si:ch73-60h1.1,LOC103036728,LOC108437280,LOC107602811,LOC107723863,LOC108270791,LOC107674560,LOC107656080 coding upstream 6478 16316587 ~ 16352239 (+)
LOC103036428 efna2,LOC108270832,LOC107674568,LOC106574064,LOC107602810 coding upstream 158646 16054659 ~ 16200071 (+)
ptbp1 ptbp1,ptbp1b,LOC107753809,LOC107723850,LOC107602808,LOC107674525 coding upstream 382044 15963205 ~ 15976673 (+)
LOC103035507 LOC108437275 coding upstream 400956 15948996 ~ 15957761 (+)
misp NA coding upstream 413521 15931709 ~ 15945196 (+)
thop1 thop1,LOC107658499,LOC107568058,LOC107592556 coding downstream 34391 16399544 ~ 16412008 (+)
LOC103039257 NA coding downstream 49050 16414203 ~ 16434080 (+)
c5h19orf25 cunh19orf25 coding downstream 81567 16446720 ~ 16449054 (+)
LOC103039567 diras1,diras1a,LOC108437290,LOC107592551,LOC107669021,LOC107745338,LOC100707435,LOC103373792,LOC101171042 coding downstream 140862 16506015 ~ 16525082 (+)
LOC103042034 LOC108437262 coding downstream 333838 16698991 ~ 16701356 (+)
G43062 NA non-coding upstream 96988 16252223 ~ 16261729 (+)
G43063 NA non-coding upstream 105023 16251931 ~ 16253694 (+)
G43035 NA non-coding upstream 321598 16035198 ~ 16037119 (+)
G42814 NA non-coding upstream 937264 15421152 ~ 15421453 (+)
G42813 NA non-coding upstream 937595 15420712 ~ 15421122 (+)
G43097 sgta,LOC106613600 non-coding downstream 26277 16391430 ~ 16398266 (+)
G43136 NA non-coding downstream 150504 16515657 ~ 16530444 (+)
G43163 vmac,LOC107680554 non-coding downstream 337097 16702250 ~ 16704192 (+)
G43180 NA non-coding downstream 350407 16715560 ~ 16715795 (+)
G43185 NA non-coding downstream 357286 16722439 ~ 16722646 (+)
LOC103036127 cunh19orf24 other upstream 374085 15978486 ~ 15984632 (+)
G42605 NA other upstream 1459469 14895062 ~ 14899248 (+)
eps15l1 eps15l1 other upstream 2224171 14070423 ~ 14134546 (+)
LOC103037142 LOC108429501 other upstream 2501356 13810833 ~ 13857361 (+)
LOC103034435 NA other upstream 2736675 13617083 ~ 13622042 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other downstream 75778 16440931 ~ 16446287 (+)
LOC103044285 NA other downstream 451448 16816601 ~ 16819251 (+)
LOC111192574 NA other downstream 583227 16948380 ~ 16950360 (+)
dda1 dda1,LOC105913185,LOC107685208,LOC105012003 other downstream 647314 17012467 ~ 17017856 (+)
G43360 apba3,si:ch73-40i7.5,LOC108271288,LOC105910839,LOC107750992 other downstream 828385 17193538 ~ 17196116 (+)

Expression


Co-expression Network