thop1 (thop1,LOC107658499,LOC107568058,LOC107592556)


Basic Information

Item Value
gene id thop1
gene name thop1,LOC107658499,LOC107568058,LOC107592556
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 16399544 ~ 16412008 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240204.3
TACCACCTCACAGGGAAGAGCTATCACGGGCGGGCGGTGGAGCAGCGAGCATTGATTCAGAGAAACGCGTGGAAAAATGGCACCTACAGGTGAAGTAGTGTTTGGCGGTGGAGATGGAGTTTGTGCTGACAATCGTTTGCGCTGGGACCTCACTCCAGAGCAGATCCATCAGCTTACGGATGAGCTTATTGCAAAGACCAAGCAAGTCTATGACTCTGTAGGATCCTTGGATCTAGATGCTGTAACCTATGAGAACACTCTGAAAGCCCTTGCTGATGTGGAGGTGGACTACACAGTCCAGCGGAACATGCTGGATTTCCCTCAGCATGTGTCGTCTTCTAAGGACGTGCGCACGGCCAGCACCGATGCAGATAAGAAGCTGTCGGAGTTTGATGTGGAGATGAGCATGAGGGAGGATGTGTACCAAAGGATTGTAGCGCTTCAGGATAAACTGCAGGATGAGTCTATCACCCCAGAGGGTAAGAGATACATGGAAAGACTGATCAAGTTGGGAAAGAGAAATGGGCTTCACCTTCCTAAGGAGACACAAGAGGAGATCAAGAAGATCAAAAAGAAACTGAGTACACTGTGTATTGATTTCAACAAGCATTTGAATGAAGACACCACTAGTCTGTCTTTCACTCGTGAGGAGCTGGGTGGACTTCCTGAAGATTTCCTCAACTCCTTGGAGAAGGACGAGACTGGAAACCTGAAGCTTACCCTCAAATACCCTCACTATTTCCCCACCATGAAGAAATGCTATGTCCCAGAAACACGAAGAAAATTAGAAGAAGCCTTCAACTCTCGCTGTAAAGAGGAAAACTCAGCTATCCTGAAGGAGCTGGTGGAGCTTCGTTCTCAAAAGTGTGCTCTCCTGGGGTTTAGCACCCATGCAGACTTTGTGCTGGAGATGAACATGGCCAAAGCATCAAAGAAGGTTGCTTCATTTCTCGAGGAACTGGCCCGCAAGCTGAAGCCCCTGGGTGAGGAGGAACGCGCCGTGATCCTGAAGCTGAAGGAGAAGGAGTGTCAGAAGAGGAACCTGCCTTTCACTGGTGAGCTCTACGCCTGGGACACACGCTACTACATGACCCAGGTGGAGGAGACTCAGTATGCTGTGGACCAGAATCAGCTGAAGGAGTATTTCCCGATGGAGGTGGTGACCCGGGGGCTCCTAGACATCTACCAGGAGCTGCTGAATCTCACTTTCCAGCAGGTAGAGGGCGCCCACGTGTGGCATGACGATGTGACTCTCTACTCTGTCAAGGACCGCACCACTGGCAAGATGGTGGGCCAATTCTACCTGGACCTTTTCCCCAGAGAGGGGAAGTATGGGCATGCTGCCTGTTTTGGCTTGCAGCCTGGATGTCTGCTCTCCGATGGGACCAGGCAGATGGCTGTGGCTGCCATGGTGGCCAACTTCAGCAAACCCACGGCCGACGCACCATCCCTGCTGCAGCACGATGAGGTGGAGACTTACTTCCATGAGTTTGGCCACGTCATGCACCAGCTTTGCGCCCAGGCGGACTTTGCTATGTTCAGCGGAACTCACGTGGAAAGAGACTTTGTGGAGGCTCCGTCTCAGATGCTGGAGAACTGGGTGTGGGAGAAGGAGCCACTGCAGCGCATGTCTAGGCATTACAAGTCCAACAACCCAATCCcagaggagctgctggataaacttATCAAGTCTCGACTTGCAAACACTGGTCTGTTCAACCTGAGGCAGATCGTACTAGCTAAAGTAGATCAAGCTCTTCACACAAAGTCAGGAGTGGATCCAGCAGAGGAGTACGGGAAGCTCTGTCAGGAAATGCTGGGGGTGCCTGCCACTGCAGGTACTAATATGCCAGCCACCTTTGGCCATCTGGCAGGTGGTTATGATGCTCAGTACTACGGTTATCTCTGGAGTGAGGTCTTCTCTATGGACATGTTCTACGCCCGCTTCAAACAGGAGGGTATCATGAACCCAAAGGTGGGTCTGGACTATAGGAACTGTGTCTTGAAGCCTGGAGGCTCAGAGGATGCTTCTGAAATGCTGAAGAAATTTCTAGGTAGAGAGCCCAAGCAAGAGGCTTTCCTCCTGAGCAAAGGACTGTCAGTGGACCTGGAGCAGGGCACACCCTGTGCCTGCTGACCAGTTACTATCACACAATACGTTATCAATGCCTCTCGGGAAAACGTTAGCACTCAAGCACTAGAGACTGCTCACTCAGATTTCTCTGAATCAGCACCCTGAAATTTCACATGCCCCATCACACACTATTACCATTTATTGctcactatatggacaaaatattgacaccTGCCCAATCATTGTTCCTTCTGAAATAAtggatattaaaaaatgaatccTGCTGA

Function

symbol description
thop1 Predicted to enable metalloendopeptidase activity. Predicted to be involved in peptide metabolic process and proteolysis. Predicted to be active in mitochondrial intermembrane space. Is expressed in lens. Orthologous to human THOP1 (thimet oligopeptidase 1).

NR:

description
PREDICTED: thimet oligopeptidase-like isoform X1

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0046872 metal ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function

KEGG:

id description
K01392 THOP1; thimet oligopeptidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240204.3 True 2361 mRNA 0.51 13 16399544 16412008

Neighbor

gene id symbol gene type direction distance location
LOC103037033 LOC108437281,LOC108270814,LOC107723845 coding upstream 34391 16358717 ~ 16365153 (+)
LOC103036728 si:ch73-60h1.1,LOC103036728,LOC108437280,LOC107602811,LOC107723863,LOC108270791,LOC107674560,LOC107656080 coding upstream 47305 16316587 ~ 16352239 (+)
LOC103036428 efna2,LOC108270832,LOC107674568,LOC106574064,LOC107602810 coding upstream 199473 16054659 ~ 16200071 (+)
ptbp1 ptbp1,ptbp1b,LOC107753809,LOC107723850,LOC107602808,LOC107674525 coding upstream 422871 15963205 ~ 15976673 (+)
LOC103035507 LOC108437275 coding upstream 441783 15948996 ~ 15957761 (+)
LOC103039257 NA coding downstream 2195 16414203 ~ 16434080 (+)
c5h19orf25 cunh19orf25 coding downstream 34712 16446720 ~ 16449054 (+)
LOC103039567 diras1,diras1a,LOC108437290,LOC107592551,LOC107669021,LOC107745338,LOC100707435,LOC103373792,LOC101171042 coding downstream 94007 16506015 ~ 16525082 (+)
LOC103042034 LOC108437262 coding downstream 286983 16698991 ~ 16701356 (+)
ndufa11 ndufa11,LOC107747164,LOC107685299 coding downstream 296046 16708054 ~ 16712430 (+)
G43097 sgta,LOC106613600 non-coding upstream 1278 16391430 ~ 16398266 (+)
G43062 NA non-coding upstream 137815 16252223 ~ 16261729 (+)
G43063 NA non-coding upstream 145850 16251931 ~ 16253694 (+)
G43035 NA non-coding upstream 362425 16035198 ~ 16037119 (+)
G42814 NA non-coding upstream 978091 15421152 ~ 15421453 (+)
G43136 NA non-coding downstream 103649 16515657 ~ 16530444 (+)
G43163 vmac,LOC107680554 non-coding downstream 290242 16702250 ~ 16704192 (+)
G43180 NA non-coding downstream 303552 16715560 ~ 16715795 (+)
G43185 NA non-coding downstream 310431 16722439 ~ 16722646 (+)
G43188 NA non-coding downstream 335818 16747826 ~ 16748678 (+)
LOC103036127 cunh19orf24 other upstream 414912 15978486 ~ 15984632 (+)
G42605 NA other upstream 1500296 14895062 ~ 14899248 (+)
eps15l1 eps15l1 other upstream 2264998 14070423 ~ 14134546 (+)
LOC103037142 LOC108429501 other upstream 2542183 13810833 ~ 13857361 (+)
LOC103034435 NA other upstream 2777502 13617083 ~ 13622042 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other downstream 28923 16440931 ~ 16446287 (+)
LOC103044285 NA other downstream 404593 16816601 ~ 16819251 (+)
LOC111192574 NA other downstream 536372 16948380 ~ 16950360 (+)
dda1 dda1,LOC105913185,LOC107685208,LOC105012003 other downstream 600459 17012467 ~ 17017856 (+)
G43360 apba3,si:ch73-40i7.5,LOC108271288,LOC105910839,LOC107750992 other downstream 781530 17193538 ~ 17196116 (+)

Expression


Co-expression Network