LOC103039257


Basic Information

Item Value
gene id LOC103039257
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 16414203 ~ 16434080 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240205.3
CCTGGTGTACCTGATCTCTGTGGATGAAATGACTAGGAACGTGTTTTTTATGGGCACACCTTGTTAGTCTGTGGTGTTAGCTGGATGTTCTTTGCACGCTGGAAGCAGTAGAACAGTGCTGCTGCTACTCTGGAGCTTTGATGAGCAGAAGAGCAGGTAATGAATAGGCTGAAGCTTGAGGACGttctgaggtagagtgagagaaggATGGCTGTGGAGGAGCTGAGGGAAGTCTTGGCAGTGAAGGCTCTACGGGGACACGATACAGACTGTCTGCAACCTCAGTCCAATGTGGTGCGGCTGTTTATtagctctacttcctcagATTTGACAAGTGAAAGAAATGCCTTCTGGGACAAGATCTACCCTGAGATACAAGATTTCTGTCAGAGTCTGGGCCTAGTCTTTGAGGTTGTGGACTTCAGATGGGGTGTATCTGATTCTGTCATTAATGATCACATGACTGTTGAGCTGTGTCTGCAGGAGATACAGTTATGTCAGAAATTGTCAGTGGGCCCTAGTTTTCTTGCTTTGGTAGGCAGTCAGTATGGTCATCGCCCCATCCCTCGATTCATATCAGAGAATGAGTTTGAGCTCCTGCTCAGTAAACTCTCCAGGAAGGACCAGGAAGGCTCGATGCTACTCAGACAATGGTTCATCAAAGACAGTAACTCTGTTCCTCCTAAATATGtccttcagccaatcagcacacaCTATCCTCATTATAACGAcacaggagctgaggctggaccGCAGCGGGACGGAGATGTTGTCTCTTGGAACCTGACAGAAGCTCGGCTGTTGCAGCTGTTGTGCACTGCAGCGCTGGAGGCTGAAAAGGATGGAGAGATGAGTGCAGAACAGAAGCAGAATTTCTTCAAGTCAATGACAGAGTGGGAGATGGAACAGGGTTTCCAGAAATCGCAGGACAACCCTTCAGCCGTCATCTTTGTCCGGGACCTGCCTCCACTAAAGAAGAGTGAGCAACAGAAGCACACCTTGAAGTTCTTGGATGTCACAGCCGATGGCCTTCTGGACAAAGAGGCACAGGAACTCTTGACCAAACTCAAAGAGCGTATCCACAGTGCCTGTGCCGATGACCCTGGCTTCCACCACATAGAACTCAGCAAAGGAGCCATTGACCGTAAAGAGCACAAGGAATACCTGGAGAACTTCTGCAAGCAGATTGTGTCTCAGTTAAAGGGAAAGATTAGCAGACAGACTGCACCACCGGCAGTTCCAGGCTGGCTGTGGCTTCAGCAAGAACTCCTCCATCATGCAAACCTGAGCAAAAAGCAGTGTGCAGTTTTCTGTGGCAGAGATGGTCTTCTAGGGAAGATCTGCCTCGTGATGTGGGAGTCCTTGAATATGCAACATGGACCTCTTGTGGTTTCTGGGCCTCCGGGAAGTGGGAAGACTGCTGTTCTCTGCAGGTTGGCCCAGGAGATGAGGGCTGTTTTGGGACCACAAGCTGTGGTCACCCTGAGGTTGCTTGGTACGTCCCCACTCAGCTCAGATGTAGACTCCGTCCTCAAGAGCGTGTGCGTTCAAGTGTGCGGTGCATTTAACCTGGCACCACCTTGCACACAAACCGCAAACTCACATGACATGCTGGTGAGGTTCTTCCAATCCATGCTGCACAAAGTGTCCGAACAAGGAGATACGCTTCTGCTCATCCTGGACTCCCTGGATCATCTACCCCATGCCAACGGTGGCCATAAGTTACGCTGGTTACCTAAagaaattccaccaaatatacaTTTGGTGGTGTCCACCCTGGCTGATTGGTCTCCATGTTTGGAAAGTCTGAAAGCACTCAACAATgatgataaatatttttttcaagttGAGCCGCTGACCCTCGAGGAAGGGCAGCTCATTACTAAAGCCTATATGGACAAGGCTGGACGAAGGCTCACCTCAGAGCAGGTGGATGCCGTCCTCCAGAGTTTCCAGAAGACTGGAAGTCCTTTGCATCTGAAGCTGTTGTTGGATATGGCAAAGCAGTGGACATCCTACACCACACTGTCAGATATTCGACTTGGCAGCTCAGTGCAGGAAGTGATCTCATTGTTCCTTGATTCActggaaggaaaacatggcaagcTATTTGTCCGCCATGCTCTGGGTTACATCACTTTATCAAGATTTGGCTTGTCGGAGGCAGAACTACAGGATATCTTGTCATTAGATAATGATGTTCTGGCAGAGGTCTATCAAAACCGGCTCCCTCCAAACCACACACTGCTGCGCTTCCCTCCTCTACTGTGGGCTCTCTTCAGACAGGACCTAGGGGATCACCTAGTGGAGAGATGGGAAAATGgcattgctgtgtgtgggttttCTCTCAGGCAGTTTATTGAAATAGTGAAGGAGAGGTATCTTTCTGTGGAGCTGCGTGTGAAGATGCACACTGTTCTCAGTGAATATTTCTTGGGTCAGTGGAGCCAGGGCCAACAGAAACCAATACTTCTGCATCCACTGATGACCCAACTGAACGCTGACAGAAAGGTACCAGCTCAGCCCTTGTGGTTTGCTGAAGGGATCCCCAATTTCAGGAAACTACATGAGCTACCCTTTCATCTTTTACATGCGGGAAAATGGGAGGAGTTACGGCAGTTGCTGCTGGGGAGTTTAGAGTGGTTGTACTGTAAGACTCTGAGCTGTGGAGTGGCCAGTGTAATCCAGGACTTCACATTTTGTACTGATGTGATGGACTGCCCTGAGATACGGCTGATCCGGGAGTGCTTTCTGCTCTTGAAGCCCACTATAGATTTTATTGATGGAAATATAGACTCCTCCCTCCTGTGTACTGAGATCACTGCCAGGTTTCAGGCTCTTGCTCATGCATACCCTGACCTGATTGGATGCCTGTACTCGCAGTGCCAGGATTGGTTTGCTTCCTGTGCAGATCCGGTGCTGGTGCCCAGGTGTAGCTTCATGGAAGCCCCTGGAGGAGCTCTGAAAAACACCCTCAATGGGTTTACAAAAGGAGTTACTGCAGTAGATGTTTGCTGTGAGAAGAGTATCCTAACAGCAGGTTCAGAGGATGGATTACTAATTGTATGGGACCTAAAGCATCTGGAGGTGCTTCATACATTTGTAGCACACACAGGTGTGGTGGAGTGTGTAAAGCTGATAAATAAAGGTGATCAGTGTTTGTCTGCTGGGCGTGACGGCTGTATTAAGAAGTGGAGTGTGTGCAGTGGTAAACAGCTGTACTGCATCCAGGCTGCAGAATCAATCCTCCCCCGGACCACCGAACTCCTCCACGTGCTCGAGTCCAGAGCTGTGCTCCTTTTCAGCACACACAGCCAGGTAAAGGCCTGGAATGTAGACACTGGAGATTTTCTTTATGAAGTGGACGTGAATGTTGAGTGCGGGGCACTCGGCAGCCTGGGACAGGAAGTGGCGATCGTGTCCAGTGATGGCCAACTATGGCTTCATGATCCAATCAGTGGTCTCCAGAAAGTACATCTTTATTTGACCTCTGGTCAGGAACTCATTGTGACCAGTGTCCTCAAACTTACCAAACATGGGAAGATTCTCATAGCTTCTGAGGAGGGCTCACTGATCTTGGTTTCTGTCTCTGGTGTTCTGGCGAATGTTGAGCTTCCTGCTCCTGCTTCATTCATGTTTACCTCTGATGATGAGGGAACTCTTTTTGCAGGTTGTGAGAGAACTCTGGTTGTCCTCCATGTGAAGCAAAACTCTGTGCAGAGAACTCAAGACTTCCTGCATGAGTCCACAGTTTTATCAGCTGTTTTTTACAGTTATGGAAGCAAAGTCATCACTGGCTCTCAGGATCAGATCATACGGgTTTGGGGTTTAACCACTGGGCAGCTGTTGGACTCTATCAGTGGTGTGGGCTCTCCTGTCATGTTCATCTCTGTATACAACAACACCATCATCTCTGCCTCGCCCAGCTCCTCCCGACTCAAACTGTGGAGTCTGGACTACGACCCCAAACATAGGAATCAGATGTGTGTTCCAGCCAACTGCACAAATGTGGTCATCACCAAAGATGGCAGCACTGTACATTACATCAAAGAGGAAGACAGATCAAAGGTGTTCACATGGAGCTGTGCTGAAGGTCTCTACAGTGATCATATGGAAGTGTCCTCTAACGTGTGCTGTATGGAACTGGCTCAGCAGAAGCGTCTGCTGTTCTGCGGCCTGCGCACCGGCACCATTTTCATCTACCCGTTAGCCTTTGCTCAAGAGACCCTGTGCATCCCCCCACCTGAGAGCATGCCTGAGGTGCGCAGTATGGCCATCAGCCCCAGAGAGGACCGGATGGCGGTGGCTTATGAGGACgcagtgtgtttgtttgagATCACGGCTCGAGACAGCTTCCCCTGTGTGGAGGGGCCGCTCCAGTGCTACTCTCTGACTCTGCTGCACTCTCCGGTTTCAGCCATGGCTCTGCTGCCGGACTGCAGGCTCCTCTATGGTACTCTCGGAGGAGAAGTGGCCGTCTATGACTTCAAGAGTGCTACGGCAGCAGAGCTGGACCACCACGGAGCCGCTATCACCTGCGTGGCCCTGAGCAACTGGGATACGCATGCTCTGATTGGCTCTGAGGACTGTGTTCAGAAGCTGTGGAACCTGCATCCTCTGCTGTTGGATCACACCATGGAATACAAGGGTTTCTACTTCGAGGGGGTTCTGTGTGCTGCTTTCTCTGTAAATGATAAACACGTCTTCACTGGATCTCGCGACAAAACCATCAAAGTCTGGGACGTTGCTACAgGGTCTTTACTGTATATCCAGTACGTCTACGCAGCCATCATCAGAATCACTCCTTTTAAGGATGGCTTCGTCGCCGTCTCACAGTTCGGGTCTCTTGTTAAGGAGAGCTTCCGCTGCCCCGACACTCTGAGCCCCGACTACAACCCTCTGCGTAACTTCAGAGCTCACTATCGCGTAACTTCCCGAGAGAAGATTCTGGAACCCCCTCACACCTCTCTGAACAAGGTCATGAATTACAATCCAGCTCAGTTTAACTTCGTAGGCATGTTCAAGACTAAACAGTCTAATACATGTGTGATTCTGTGAGGAACATGattacctattttttttattgtatgacTTTATTCATATTGTAGCCTTTTCAAAGGGTTTATTCAcaagaaaatatacaaaaataatgtaaaagaaaacataggaaattaatctgatttaaaacactaaatatttttattacctTTGATGGGTTGCTTTCTAGCATCAAaagattaaaattaacatttacatttttttatttgtacagtTTAGAAATGTTAGTTTTATTGTGGTATATTATAAGAACATCTTAGAAACAATATAATTCTGATGATATTGTCTgagtagagtttttttttttttttttagttttaacaaatacaacaacaaagcaaaacttaacaaaaacaaataaaatcacagtcTTAAAATGGGAAAGCCTGTTTTGCATCCAGAAAATCGCGAATTCACATTTGTTCAgttatttaatacaatatatggacaaaagtaatgggacatcTACTTATTACACCTACAATggctttaaatgatttattccaGTTTTGCACCATTTATAATCCATGAGCATTATTATGTAAGTGGCCCTCTGTTGCAGCTTTAACTGCAGGTTAGAAATTAACTCGCAACCCAGCTCTGTAACTGTACATGGTCAGTGACTTTGTTGCGGAATTGCTGTGGTTTCTATAtggtttcactttttttttttttccagttctgTCAATGAGACTGAATGAAACACTTgcatttaaaggtctccttttACTAAAATCcgctttttcttgtttttttttctggacttGGGCTGCAGAAGAGCAGACACtgtcagctaaagagcttacagctctgtttatacCAGCTTGTTAACATTAGCAATCTTATGTAAGTAACTtaaggtttaaatcggatctccagtGAATTCCGGATTTTACCGAGACCATTAATATACACTAGGAatcacggtttgacaaggtagcacaactcgacagaacactgaGCAAAGTGGGCGCCGGTGGGGAGGGAGGGGAGGGAGTCGCAAGGGCGCATGGGTAGTAGAGTCCAGCTTGACACTACGATAGGATTCAGctcctgtgcaacaagtccagccGTGACATTATCTCACCACTAAATATTCCATAGCCATACTATAATACAGTGAAAGTGACTGGGAATGAAAGCAAGTTAGTGGTTGCCAACTTTCTGCAGAATCAATCACTACAGCCCTTCAAAATAAATGTacccttcagattagctcaa

Function

GO: NA

KEGG:

id description
K24734 NWD; NACHT domain- and WD repeat-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240205.3 True 6279 mRNA 0.47 21 16414203 16434080

Neighbor

gene id symbol gene type direction distance location
thop1 thop1,LOC107658499,LOC107568058,LOC107592556 coding upstream 2195 16399544 ~ 16412008 (+)
LOC103037033 LOC108437281,LOC108270814,LOC107723845 coding upstream 49050 16358717 ~ 16365153 (+)
LOC103036728 si:ch73-60h1.1,LOC103036728,LOC108437280,LOC107602811,LOC107723863,LOC108270791,LOC107674560,LOC107656080 coding upstream 61964 16316587 ~ 16352239 (+)
LOC103036428 efna2,LOC108270832,LOC107674568,LOC106574064,LOC107602810 coding upstream 214132 16054659 ~ 16200071 (+)
ptbp1 ptbp1,ptbp1b,LOC107753809,LOC107723850,LOC107602808,LOC107674525 coding upstream 437530 15963205 ~ 15976673 (+)
c5h19orf25 cunh19orf25 coding downstream 12640 16446720 ~ 16449054 (+)
LOC103039567 diras1,diras1a,LOC108437290,LOC107592551,LOC107669021,LOC107745338,LOC100707435,LOC103373792,LOC101171042 coding downstream 71935 16506015 ~ 16525082 (+)
LOC103042034 LOC108437262 coding downstream 264911 16698991 ~ 16701356 (+)
ndufa11 ndufa11,LOC107747164,LOC107685299 coding downstream 273974 16708054 ~ 16712430 (+)
nrtn NA coding downstream 293119 16727199 ~ 16759637 (+)
G43097 sgta,LOC106613600 non-coding upstream 15937 16391430 ~ 16398266 (+)
G43062 NA non-coding upstream 152474 16252223 ~ 16261729 (+)
G43063 NA non-coding upstream 160509 16251931 ~ 16253694 (+)
G43035 NA non-coding upstream 377084 16035198 ~ 16037119 (+)
G42814 NA non-coding upstream 992750 15421152 ~ 15421453 (+)
G43136 NA non-coding downstream 81577 16515657 ~ 16530444 (+)
G43163 vmac,LOC107680554 non-coding downstream 268170 16702250 ~ 16704192 (+)
G43180 NA non-coding downstream 281480 16715560 ~ 16715795 (+)
G43185 NA non-coding downstream 288359 16722439 ~ 16722646 (+)
G43188 NA non-coding downstream 313746 16747826 ~ 16748678 (+)
LOC103036127 cunh19orf24 other upstream 429571 15978486 ~ 15984632 (+)
G42605 NA other upstream 1514955 14895062 ~ 14899248 (+)
eps15l1 eps15l1 other upstream 2279657 14070423 ~ 14134546 (+)
LOC103037142 LOC108429501 other upstream 2556842 13810833 ~ 13857361 (+)
LOC103034435 NA other upstream 2792161 13617083 ~ 13622042 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other downstream 6851 16440931 ~ 16446287 (+)
LOC103044285 NA other downstream 382521 16816601 ~ 16819251 (+)
LOC111192574 NA other downstream 514300 16948380 ~ 16950360 (+)
dda1 dda1,LOC105913185,LOC107685208,LOC105012003 other downstream 578387 17012467 ~ 17017856 (+)
G43360 apba3,si:ch73-40i7.5,LOC108271288,LOC105910839,LOC107750992 other downstream 759458 17193538 ~ 17196116 (+)

Expression


Co-expression Network