LOC103039567 (diras1,diras1a,LOC108437290,LOC107592551,LOC107669021,LOC107745338,LOC100707435,LOC103373792,LOC101171042)


Basic Information

Item Value
gene id LOC103039567
gene name diras1,diras1a,LOC108437290,LOC107592551,LOC107669021,LOC107745338,LOC100707435,LOC103373792,LOC101171042
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 16506015 ~ 16525082 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240206.3
ttttcaatgtggtaaaataaaagaaactcatcatctgTGTGTATTATAAGAATTTAGTGTATTTTGCGAGCAGCCAATCGCAGCGCCGAGGAGGCGGGACTGGACGGAAAACAGGCGTGAAAAGAAGCAGCtcgcgtgtgcgtgtgcgtcaGAACACGTtgcaagagggagagagagatagcaatAATAGCACGTTCAGGCAGTGGCATCCTCCCATTTAAGGCATGCAAATCGAAAGACAAGATGCTCCGGGACTGGAATAGCCTAGAACACACGCTATTCCTGCAGCCTTCGCCTTCCTCTCGCTTCCTATGATTTATCACTGACGTCTTCGGGACATTGCAGCACAGTCACCAGATCTCAGGGAATCTCTGAGTGTTAGCACTGCCGTGCCCCTGAGTGAAGCGTTCCAGCATGCCGGAGCAGAGCAATGACTACCGCGTGGTGGTGTTCGGTGCTGGGGGTGTGGGCAAGAGCTCCCTGGTCCTGCGCTTCGTGAAGGGCACCTTCAGGGACACCTACATCCCCACCGTGGAGGACACCTACCGGCAGGTCATCAGCTGCGACAAGAGCGTGTGCACGCTGGAGATTACCGACACCACGGGCAGCCACCAGTTCCCCGCCATGCAGCGTCTGTCCATCTCCAAGGGCCACGCCTTCATCCTGGTCTACTCCATCACCAGTCGGCAGTCCCTAGAGGAGCTCAAGCCCATCTACCAGCAGGTGCTGGCTATCAAGGGCAACGTGGAGGGAATCCCCATTATGCTGGTGGGCAACAAGAGCGACGAGACCCAGCGGGAGGTGGAGACCAAAGAAGGCGAAGCCCAGGCCAACAACTGGAAGTGTGCCTTCATGGAAACCTCGGCCAAAACCAACCACAACGTAACCGAGCTCTTCCAGgagttgctgaacctagacaaGAAGCGCGACATGAGCCTCAACATGCGTTCCAGCAAGCAGCGGAGGGCCGATAAGCTGAAGGCCAAGTGCAGCGTGATGTAAAAGCTGAAAGGATCAAGCAACGGTAAAGAACAGGCATTGGACAGGGATGTCAGTCTCAGCTCCCGGAGGACCACAGCACTGCAGAGATTAGTGTTCATCTTCCGCTCAAGGTGAAATCCAACCCGTTTCTGGTGGTCCGTCTTACCGTAGACAAttcaaaatacaaataaaaatgggtatagataataaaaataagattggTTCTTGGCTTTACCTAAAACATATATCCAAATATTAAAGCTCTTAACatcttatttataatatttttccaaaaatggCTCATTAAATCCAATTTAAGTGAGGATTCAATGGCATCACTCCAAAGAGccattatatatttaagtgtgGATTGTcctttatataattttaattaaacatttaaacataattatataaacatttgtCTTGGATGTATTTATTCctgctatatttatttaatggctTGTTTAAAAGTTTACATTTGAATTTGCATACTTATTTACATATGTAAattctcattctcattttcATTCTCACATTCGTTGTGTTGAGCTAGTCCTATAATCATAATGTTATGATCGTGTAGGCCTATTAGTAGATCTGGGCAACTGTTTTCAGAAATGTTTCtacacatatttataattttctaaAGAAATCTGATGGAAGTTTCCTAGTGACTATTAATCCAATTCATTCAATTTAAATTAGAAAGCAAAAACAACATGTTTACAGCAGGGTGACCCAACAGTGAAATTCCAAGATGATCCATTAGACTAAAGCTGATACTCTCATATGAAAAACTGCTTGTAAAACAGCAGAAAGTAGTTGGAGTGAATGCAGACTGAATGGGTGGCTGCTTTGCATGGCTGCTTACGCCCCTTTGCAACCCATGGTGTGGttttaattagtaaaaaaatgagatttctgaataaaaaaatactctgaaTTCAGATGAGGAAGGTCTTAGTAATTAGCTGAGTGGTTGAATCAgtttgataataaaaaaagctaatcCCTGCAGCGCTGCAGTCCTCCAGAAGTGGATGTTGACACCCCAGGTGTAGGAGAATGGCATCAGCGACGATGTGACTGATCgcaaatgtacaaaaagtcCCTCATCACATCTATTACCCTCCTCCTTCGGATCTGAATCAGGTATTCTTCGGTGCACAGTCAACCTAccagactctttttttttctttctatctcttttatTTGGCTCCTGGAATGCCCACCAGAATCTCTTTTTGGGGAAGCCTCCAAACTCCAAGCCACCCCACCCCGTCCTCCCCCTGCCTCCTTCTtcctgcattttacacagtaaCTGAGATGACAGTGACATCTTAACCTCTTGAGTCTTAACCTGTTGTTCTGCCACCTCACGCCACCTCTGCTCATGCACAGCTTTCCTCAACTAaagtttgtttgtctgttcaaaaaaaaaagaagaaaaaaatgattatccTGTCATCATCGTGGTCATTTACAGGGCTGTGTCTGGAAAAAGGATTTCATTGATAACCCGGACAAGAACGTGTCTTGAACTGGTTATGCACTTTATATTGTATTCTCAGTGGGCAGACAAGACCAAGAGGTGACAAAGCATTATCCCGCTCTTCCAAATTAGACATGATAAAACAGCACAAACCGCACGCTCGAAACGCTCAGATCTGGGACCACAGACTCCTTCTCTTTGTTGGCTGGCTTGCTAATAGTACAAAACTGGTTCACGGGAAACACTGGGTGAATTGTGAATGATGCATATTTGACGACGTAGAACTACCTTCCTTCTCATTGTGATTTAGATTCAAGTACAGAGCTTTATCTAAACAAAGCACAGCGAAGCAGTTTTAAATGTCCATAATTTCCGAAAGcctcttttttagtttttttcctttttcccgATGTTGGTGGCTCACGAGAATCTGAAAATATGCATTAATCATCATCTAACGGAAAACATTTAACTTGTGCGTGAAATCTAAATGTGTACTACCATCATTTGTATTGGATTCCCCTGTACAGCTCATcatgtcttttctttctcccgTGTGTATATTTCCTCCGACTATTAAATGCCATTGCTTTAGcaatacattatataaaaagcacttttagaATCTTGAGCACATTCAGAACATTGAAAATGAACCTTTACGAAAAATGTTTTTGTCGGACACTCTGCGTTTACAATTTTAAAGCAGGTACAGTGTTTATCTAATAATATTATGTGAAGgaccagaggaaaaaaaagatatatataataaagaagCACAAACATATGGTGTTAAACAACTGTT

Function

symbol description
diras1a Predicted to enable GDP binding activity; GTP binding activity; and GTPase activity. Acts upstream of or within neuron development and trigeminal ganglion development. Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in nervous system and otic vesicle. Orthologous to human DIRAS1 (DIRAS family GTPase 1).
diras1 Enables GTP binding activity and GTPase activity. Predicted to be involved in signal transduction. Located in plasma membrane.

NR:

description
PREDICTED: GTP-binding protein Di-Ras1-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07841 DIRAS2; DIRAS family, GTP-binding Ras-like 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240206.3 True 3281 mRNA 0.43 2 16506015 16525082

Neighbor

gene id symbol gene type direction distance location
c5h19orf25 cunh19orf25 coding upstream 56961 16446720 ~ 16449054 (+)
LOC103039257 NA coding upstream 71935 16414203 ~ 16434080 (+)
thop1 thop1,LOC107658499,LOC107568058,LOC107592556 coding upstream 94007 16399544 ~ 16412008 (+)
LOC103037033 LOC108437281,LOC108270814,LOC107723845 coding upstream 140862 16358717 ~ 16365153 (+)
LOC103036728 si:ch73-60h1.1,LOC103036728,LOC108437280,LOC107602811,LOC107723863,LOC108270791,LOC107674560,LOC107656080 coding upstream 153776 16316587 ~ 16352239 (+)
LOC103042034 LOC108437262 coding downstream 173909 16698991 ~ 16701356 (+)
ndufa11 ndufa11,LOC107747164,LOC107685299 coding downstream 182972 16708054 ~ 16712430 (+)
nrtn NA coding downstream 202117 16727199 ~ 16759637 (+)
pole4 pole4,LOC107680508,LOC107597157,LOC107747219 coding downstream 327010 16852092 ~ 16856550 (+)
LOC103044574 LOC103044574,LOC108437267,LOC106613702,LOC106573554,LOC103463524,LOC102231954,LOC107553533 coding downstream 335040 16860122 ~ 16863161 (+)
G43097 sgta,LOC106613600 non-coding upstream 107749 16391430 ~ 16398266 (+)
G43062 NA non-coding upstream 244286 16252223 ~ 16261729 (+)
G43063 NA non-coding upstream 252321 16251931 ~ 16253694 (+)
G43035 NA non-coding upstream 468896 16035198 ~ 16037119 (+)
G42814 NA non-coding upstream 1084562 15421152 ~ 15421453 (+)
G43163 vmac,LOC107680554 non-coding downstream 177168 16702250 ~ 16704192 (+)
G43180 NA non-coding downstream 190478 16715560 ~ 16715795 (+)
G43185 NA non-coding downstream 197357 16722439 ~ 16722646 (+)
G43188 NA non-coding downstream 222744 16747826 ~ 16748678 (+)
G43196 NA non-coding downstream 261489 16786571 ~ 16787612 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other upstream 59728 16440931 ~ 16446287 (+)
LOC103036127 cunh19orf24 other upstream 521383 15978486 ~ 15984632 (+)
G42605 NA other upstream 1606767 14895062 ~ 14899248 (+)
eps15l1 eps15l1 other upstream 2371469 14070423 ~ 14134546 (+)
LOC103037142 LOC108429501 other upstream 2648654 13810833 ~ 13857361 (+)
LOC103044285 NA other downstream 291519 16816601 ~ 16819251 (+)
LOC111192574 NA other downstream 423298 16948380 ~ 16950360 (+)
dda1 dda1,LOC105913185,LOC107685208,LOC105012003 other downstream 487385 17012467 ~ 17017856 (+)
G43360 apba3,si:ch73-40i7.5,LOC108271288,LOC105910839,LOC107750992 other downstream 668456 17193538 ~ 17196116 (+)
adgrl2 adgrl2 other downstream 1108014 17633096 ~ 17768954 (+)

Expression


Co-expression Network