LOC103042034 (LOC108437262)


Basic Information

Item Value
gene id LOC103042034
gene name LOC108437262
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 16698991 ~ 16701356 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240214.3
AAGCGCTATTGTTCATCAGTGAcgtctgaacttttaaaatcaGCGTTCTAAATTAGCTTCACCTGGGCTCGTGTGGCGACACAGGGAGACCCGCCGGGAGGCTCTCCAGTATGTCTTCACCCCTGTTCTCGGAGATCTTCCACTGTGAGGAGGGTTCTCACCTGAAGGACTCTTTCTCCTACACTGATGATGGACTGAATGATAGTTTGGATGGaagtTCAGCAGAGCTGACTGATGTATTTGAAGAAGAAGGATGTGAAGGCGAAGCCTGGACTCCACCACCAagtgaactgaaactgaaaatagCTGCTCAGCTTGAGCACTACCTCTCTGATGAGAATCTGGAAGGCGATGCATTTCTGTTAAAACACATCCAGAGGAACAAGATGGGTTATGTCAGCCTGAAGTTGATGACCTCTTTCAAAAAGATCCGAGAGCTCACACGTGACTGGCGTACAACTCTGGCAGCAGCATGCACCTCTCATCATCTTGAGGTAAATGAGGCAGGAACCAAGGTGCGACGGAGAACCCCGGTTCCTGAATGGCTGCTGTGCATCCCTACCACCAAACTGCTGTTGGCCTGGAACTTCCAGGACATTATCAGTTCCACAGAAGTAGAGAACAGTGGTTCATCTGGAGCAGAGCAGCTGCAGCAAGACTTCATGGAGACCGCCATGTCTATATTTGGTTCTCATGGTACCATCACTTCCCTGCGCATCCTTCGTCCAGGAAAAGAGATACCTGCTGAGCTCAAGCGCTACACCAAGAAACACACTGAACTTGGGCGTAAACTGTGCGCGGTGGTGGAGTATGAGTACCTGGATGGGGCCCGCAAGGCCTATGAAGTTCTCAAAGCAGAGGAGCATCTGAATGGAGGGAAAGGCATTCGGGTGGTGCTCCTTGGTAGCCGTGGCACAAGGAAACCAGGAACCagccaggttcacactgaggAAGAGTCTGAGGAAGGCACTGAGAATGATTATGACGATTCCAAGAAACAAAACAGGAAAGCCAAGAGGCATCTCTGCTCTCTTGAAGATTCAGCTCTGTACAGCTCCTCTGAATCTGACTTCGCCCCAGCATCACCCCGACCTAACCGACGGGTCTCTCGCCCTCAGGCCATGTACGGCAGCCCTCTGGCCATCCCACGGGTGTCTAGCTTTCGCTCAGACCCTTTCAGAAACCCACTTGGTAGCCCTATCGGGAGCCCCCTCATACCCCGTAAGCTGTTCCCTGTAGGCCATGCCAGCTCCCCAGTTGCCACAACACCAATTTTCAGTAGCACTCCTCCCTCGACTGTCAGTTCAGCTTGCAGCAGAAGCCGGAGTTCAGGAGATTACTCCCAAGACAGCGCAGGGTACGCAGGGAGCCCCTGGGTCCAACGCCGAAGAAATGCTGCCCAGGTAATTCAAGCAGAGAAAAGCTGGCCTATGTCTCCCAGTCAGATAAAGAGGCCGCTTGGTGTGCTGGTTGTGCGCCAGCCGATGGGACCCGACGGCACCAAAGGCTTCCACAACAGCATTGGCAGGGGAAAGGTGCTGTTTCCACATTGATGAATTGATTTTCTGCTGATCGTTTGCTTGTAGGTCTAAGATCTGCCATGCATAgcacttgttttcttttaaatcagtgtttcagtacTGACCTCCGCATTAATTGCTTATATCAAAGTGTAGAAGCTActcttttatacaaaaaaagttttgtatttgttgaacgaattaataaataaagatgacattGTAATGAAAATGTT
>XM_007240215.3
AAGCGCTATTGTTCATCAGTGAcgtctgaacttttaaaatcaGCGTTCTAAATTAGCTTCACCTGGGCTCGTGTGGCGACACAGGGAGACCCGCCGGGAGGCTCTCCAGTATGTCTTCACCCCTGTTCTCGGAGATCTTCCACTGTGAGGAGGGTTCTCACCTGAAGGACTCTTTCTCCTACACTGATGATGGACTGAATGATAGTTTGGATGGtTCAGCAGAGCTGACTGATGTATTTGAAGAAGAAGGATGTGAAGGCGAAGCCTGGACTCCACCACCAagtgaactgaaactgaaaatagCTGCTCAGCTTGAGCACTACCTCTCTGATGAGAATCTGGAAGGCGATGCATTTCTGTTAAAACACATCCAGAGGAACAAGATGGGTTATGTCAGCCTGAAGTTGATGACCTCTTTCAAAAAGATCCGAGAGCTCACACGTGACTGGCGTACAACTCTGGCAGCAGCATGCACCTCTCATCATCTTGAGGTAAATGAGGCAGGAACCAAGGTGCGACGGAGAACCCCGGTTCCTGAATGGCTGCTGTGCATCCCTACCACCAAACTGCTGTTGGCCTGGAACTTCCAGGACATTATCAGTTCCACAGAAGTAGAGAACAGTGGTTCATCTGGAGCAGAGCAGCTGCAGCAAGACTTCATGGAGACCGCCATGTCTATATTTGGTTCTCATGGTACCATCACTTCCCTGCGCATCCTTCGTCCAGGAAAAGAGATACCTGCTGAGCTCAAGCGCTACACCAAGAAACACACTGAACTTGGGCGTAAACTGTGCGCGGTGGTGGAGTATGAGTACCTGGATGGGGCCCGCAAGGCCTATGAAGTTCTCAAAGCAGAGGAGCATCTGAATGGAGGGAAAGGCATTCGGGTGGTGCTCCTTGGTAGCCGTGGCACAAGGAAACCAGGAACCagccaggttcacactgaggAAGAGTCTGAGGAAGGCACTGAGAATGATTATGACGATTCCAAGAAACAAAACAGGAAAGCCAAGAGGCATCTCTGCTCTCTTGAAGATTCAGCTCTGTACAGCTCCTCTGAATCTGACTTCGCCCCAGCATCACCCCGACCTAACCGACGGGTCTCTCGCCCTCAGGCCATGTACGGCAGCCCTCTGGCCATCCCACGGGTGTCTAGCTTTCGCTCAGACCCTTTCAGAAACCCACTTGGTAGCCCTATCGGGAGCCCCCTCATACCCCGTAAGCTGTTCCCTGTAGGCCATGCCAGCTCCCCAGTTGCCACAACACCAATTTTCAGTAGCACTCCTCCCTCGACTGTCAGTTCAGCTTGCAGCAGAAGCCGGAGTTCAGGAGATTACTCCCAAGACAGCGCAGGGTACGCAGGGAGCCCCTGGGTCCAACGCCGAAGAAATGCTGCCCAGGTAATTCAAGCAGAGAAAAGCTGGCCTATGTCTCCCAGTCAGATAAAGAGGCCGCTTGGTGTGCTGGTTGTGCGCCAGCCGATGGGACCCGACGGCACCAAAGGCTTCCACAACAGCATTGGCAGGGGAAAGGTGCTGTTTCCACATTGATGAATTGATTTTCTGCTGATCGTTTGCTTGTAGGTCTAAGATCTGCCATGCATAgcacttgttttcttttaaatcagtgtttcagtacTGACCTCCGCATTAATTGCTTATATCAAAGTGTAGAAGCTActcttttatacaaaaaaagttttgtatttgttgaacgaattaataaataaagatgacattGTAATGAAAATGTT

Function

NR:

description
PREDICTED: la-related protein 6-like

GO:

id name namespace
GO:0044424 obsolete intracellular part cellular_component

KEGG:

id description
K18733 LARP6; la-related protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240214.3 True 1756 mRNA 0.50 4 16698991 16701356
XM_007240215.3 False 1753 mRNA 0.50 4 16698991 16701356

Neighbor

gene id symbol gene type direction distance location
LOC103039567 diras1,diras1a,LOC108437290,LOC107592551,LOC107669021,LOC107745338,LOC100707435,LOC103373792,LOC101171042 coding upstream 173909 16506015 ~ 16525082 (+)
c5h19orf25 cunh19orf25 coding upstream 249937 16446720 ~ 16449054 (+)
LOC103039257 NA coding upstream 264911 16414203 ~ 16434080 (+)
thop1 thop1,LOC107658499,LOC107568058,LOC107592556 coding upstream 286983 16399544 ~ 16412008 (+)
LOC103037033 LOC108437281,LOC108270814,LOC107723845 coding upstream 333838 16358717 ~ 16365153 (+)
ndufa11 ndufa11,LOC107747164,LOC107685299 coding downstream 6698 16708054 ~ 16712430 (+)
nrtn NA coding downstream 25843 16727199 ~ 16759637 (+)
pole4 pole4,LOC107680508,LOC107597157,LOC107747219 coding downstream 150736 16852092 ~ 16856550 (+)
LOC103044574 LOC103044574,LOC108437267,LOC106613702,LOC106573554,LOC103463524,LOC102231954,LOC107553533 coding downstream 158766 16860122 ~ 16863161 (+)
babam1 babam1,LOC107597198 coding downstream 230144 16931500 ~ 16936906 (+)
G43136 NA non-coding upstream 168547 16515657 ~ 16530444 (+)
G43097 sgta,LOC106613600 non-coding upstream 300725 16391430 ~ 16398266 (+)
G43062 NA non-coding upstream 437262 16252223 ~ 16261729 (+)
G43063 NA non-coding upstream 445297 16251931 ~ 16253694 (+)
G43035 NA non-coding upstream 661872 16035198 ~ 16037119 (+)
G43163 vmac,LOC107680554 non-coding downstream 894 16702250 ~ 16704192 (+)
G43180 NA non-coding downstream 14204 16715560 ~ 16715795 (+)
G43185 NA non-coding downstream 21083 16722439 ~ 16722646 (+)
G43188 NA non-coding downstream 46470 16747826 ~ 16748678 (+)
G43196 NA non-coding downstream 85215 16786571 ~ 16787612 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other upstream 252704 16440931 ~ 16446287 (+)
LOC103036127 cunh19orf24 other upstream 714359 15978486 ~ 15984632 (+)
G42605 NA other upstream 1799743 14895062 ~ 14899248 (+)
eps15l1 eps15l1 other upstream 2564445 14070423 ~ 14134546 (+)
LOC103037142 LOC108429501 other upstream 2841630 13810833 ~ 13857361 (+)
LOC103044285 NA other downstream 115245 16816601 ~ 16819251 (+)
LOC111192574 NA other downstream 247024 16948380 ~ 16950360 (+)
dda1 dda1,LOC105913185,LOC107685208,LOC105012003 other downstream 311111 17012467 ~ 17017856 (+)
G43360 apba3,si:ch73-40i7.5,LOC108271288,LOC105910839,LOC107750992 other downstream 492182 17193538 ~ 17196116 (+)
adgrl2 adgrl2 other downstream 931740 17633096 ~ 17768954 (+)

Expression


Co-expression Network