ndufa11 (ndufa11,LOC107747164,LOC107685299)


Basic Information

Item Value
gene id ndufa11
gene name ndufa11,LOC107747164,LOC107685299
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 16708054 ~ 16712430 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240217.3
AGCGCTGAAACCTCGCGAGAACTGAGAGTGTCCTTCTTGTCTCCAAGATGGGTTACTGGGAGCTCGAAGAGGGGAAAGACTgtgtggagaaaacatggattACCACCAAACTGGGCACAGCCGTGGgGCTTGTTGGCTCAGCGTATCATATTTTGGCATTCCAGCCTGATACAGCAGCTGAAGCACTGACAAGGGCAGCAAATGCTACAGCTACAATggCAACCATGGGGGCGATATTTGGAATGGCCACTTGTCTGAGTGCCCATGCTCGGGATGCTCCTGATGACCCCACTAACTACCTCATTGGTGGATGCGCAGCAGGCGCCTTTCTTGGAGCTCGAAccCATAGTGCTATGACTGGCACAACAGCGTGTCTTGGTCTGGGGGTAGCGGCATGGCTCACTAAAGTGGGGAAGATGGAGGGCTGGAGGCTCAGTGGGCCACCCAAACTGTAAAGCCTTTACTTTGTGGTTTTgtgttaatattgtatattacttaaataaatctTTTGAAGGTGTCATTATTTGA

Function

symbol description
ndufa11 Predicted to act upstream of or within mitochondrial respiratory chain complex I assembly. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Predicted to be part of mitochondrial respiratory chain complex I. Human ortholog(s) of this gene implicated in nuclear type mitochondrial complex I deficiency 14. Orthologous to human NDUFA11 (NADH:ubiquinone oxidoreductase subunit A11).

NR:

description
PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K03956 NDUFA11; NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240217.3 True 528 mRNA 0.50 4 16708054 16712430

Neighbor

gene id symbol gene type direction distance location
LOC103042034 LOC108437262 coding upstream 6698 16698991 ~ 16701356 (+)
LOC103039567 diras1,diras1a,LOC108437290,LOC107592551,LOC107669021,LOC107745338,LOC100707435,LOC103373792,LOC101171042 coding upstream 182972 16506015 ~ 16525082 (+)
c5h19orf25 cunh19orf25 coding upstream 259000 16446720 ~ 16449054 (+)
LOC103039257 NA coding upstream 273974 16414203 ~ 16434080 (+)
thop1 thop1,LOC107658499,LOC107568058,LOC107592556 coding upstream 296046 16399544 ~ 16412008 (+)
nrtn NA coding downstream 14769 16727199 ~ 16759637 (+)
pole4 pole4,LOC107680508,LOC107597157,LOC107747219 coding downstream 139662 16852092 ~ 16856550 (+)
LOC103044574 LOC103044574,LOC108437267,LOC106613702,LOC106573554,LOC103463524,LOC102231954,LOC107553533 coding downstream 147692 16860122 ~ 16863161 (+)
babam1 babam1,LOC107597198 coding downstream 219070 16931500 ~ 16936906 (+)
plvap NA coding downstream 232860 16945290 ~ 16946977 (+)
G43163 vmac,LOC107680554 non-coding upstream 3862 16702250 ~ 16704192 (+)
G43136 NA non-coding upstream 177610 16515657 ~ 16530444 (+)
G43097 sgta,LOC106613600 non-coding upstream 309788 16391430 ~ 16398266 (+)
G43062 NA non-coding upstream 446325 16252223 ~ 16261729 (+)
G43063 NA non-coding upstream 454360 16251931 ~ 16253694 (+)
G43180 NA non-coding downstream 3130 16715560 ~ 16715795 (+)
G43185 NA non-coding downstream 10009 16722439 ~ 16722646 (+)
G43188 NA non-coding downstream 35396 16747826 ~ 16748678 (+)
G43196 NA non-coding downstream 74141 16786571 ~ 16787612 (+)
G43198 NA non-coding downstream 126061 16838491 ~ 16843005 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other upstream 261767 16440931 ~ 16446287 (+)
LOC103036127 cunh19orf24 other upstream 723422 15978486 ~ 15984632 (+)
G42605 NA other upstream 1808806 14895062 ~ 14899248 (+)
eps15l1 eps15l1 other upstream 2573508 14070423 ~ 14134546 (+)
LOC103037142 LOC108429501 other upstream 2850693 13810833 ~ 13857361 (+)
LOC103044285 NA other downstream 104171 16816601 ~ 16819251 (+)
LOC111192574 NA other downstream 235950 16948380 ~ 16950360 (+)
dda1 dda1,LOC105913185,LOC107685208,LOC105012003 other downstream 300037 17012467 ~ 17017856 (+)
G43360 apba3,si:ch73-40i7.5,LOC108271288,LOC105910839,LOC107750992 other downstream 481108 17193538 ~ 17196116 (+)
adgrl2 adgrl2 other downstream 920666 17633096 ~ 17768954 (+)

Expression


Co-expression Network