nrtn


Basic Information

Item Value
gene id nrtn
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 16727199 ~ 16759637 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240218.3
CCCCCCTCCCATCTCTCCTCCTAAACCATCCCTCTGCACCAGCACTTCAGCACTAAGCCAGCTGGAGACTcgctttttttttgcacaccaGTTCCATTCACCCCACGAGAAACTGGTCTGGTCTTGCTGTGGACGGAAATGACTTTCAGCTTTTGTGgaaagtgttttatttgttgGGCACCAAGTGGCAGCGGCTCTTCGCTCTTAATCCACTGAGCAGACAGGATCAAAAGGAGAAGGTAACATTCTGGTCTCAGCCCAAAGAAGAGCTCTGGGTTTGTGCGCTTGTGTAATCAAGGCTCGGGATCACGTACCTGAAGACTTGTCCCTGAAggactctttaaaaaaaaaaagaaaaaaaaaaaaaacactcaaaaagaGTTGAAGACTTGATGCTTGATTCTGTTTATCGGATCCATCGACTAAGAGGAAGAATCTTTGGAGTTGGTGAGATTTGTTGGAACTTTTtcttggaattttttttttgtcatgtttgGATTTTGGAATATTGCTTGTCAGAGATTGTGTGAAGGGACACACGTACGCAAGTGTGCTGCCATCAGCTTTTCCTCACTTTAGTGAATCACTGCGGAGGAATTCTTGCGGAATAAACAACTTTCCCAAGCCACACTGCCATCGTTCTGTATTATATTTCATGGGACATGAGCAGACTGGCTGAAGTTGTATGCATAATTTAGTTTTAGATATCTTCTAATAATACAGATTTAAAGTTCTGCATTAGTTGGCGTTTGGTGGATTCACAACATAGTTGTTGCTATCTCACTGTATTATCATCTTCACATTCTAAAATCCTAACATCACAGATCTCAGATCTCTGGTATTCCAGACTATTTGGACTAGAGGGGGGGTGGCACTAAAAGCAAACcatctgtgcaaaaaaaaaaaaaaaaaaaacttttttttttttgtttttatatttttacccaGAGGAAGACACTATTGATTTAAATGCCTGCGTGACTTATTGCACAATAACTTCTTAGCAGAAAGATGGGGATTTGGGGAGCTTTCTTACACACCCTAAGCCCCTGGACGTCGGATGGTCCTCTGAAGCTAAAAGAATGCAGCACTTTCGGGGGCTAACCCTTGAACGTCCCGCTCCGTAAACTGACTTCTGGACAagactgagaaaaagaaaacaagaaagcaGGAGAGAAACGACTGACTGCGCTCTGTTGTGTCTGTCCCCCTCCTCAAACGAAAGGGCTGGAATATCGATTAATGCCATTTTTACCCAAAGGTCAACTGAAAACATAGACACGCTGACAAGTCTGGATAAGCCGGGCAAACGAGTGCCAATGCTCTTACTCATTTTAAGATGAAGTTATGGAAGTGTGCCGCCATCGCCTTGACGCTCTGTGGTGCTGCACTGTCCATGTTCCTCTCTAGAATCCTGCTTCCCCCAAAAGATCCTGCTCCTCTTCGCTTTGAGCTTTCATCTATTTCTTCACCGCCATCACCGCTATCGTCATCACCATCACCCACATCTCCCATGTCCTCAAACAGCTCCTCTTCAGGGATTGGTGGAAAGCTTCGGAGGGTCAGATCAGCGAATGGTGCCAACTCGGTCATCTCGGAATTTGTGCACATGTTCCAGAGCTTCACCGAGGGCGAGCTGAAGCAGATCGTCTCCACGCTGATGGAGCGCAAATCACGGCGGGACACCAAGCAGGGCAAGAGGACTAAACGCGCCAAGAATGGCAACAAGGCGTGCTccctgcaggaggaggaggtgacGATTAGTCAGCTAGGCCTGGCCTACATCAGCGACGAGACTATCCCTTTCCGCTACTGCAGCGGCAGGTGCGTGGCCAGCCGCCGTAACTATGACCTGACGCTGGCGTCCTTGAAGCGTAAGCACGTGCTGAACCGGGAGAACCTCAAGAAAGCCAGGCACAGCCCCTGCTGCCGGCCTATTGCTTACGAAAAGGAGATCTCCTTTCTAGACAACGAGAGCAAATACCACACCATCTACGATGTTTCAGCAAGTGAGTGCGCTTGCGTATGATCCTGATGGTGGAAGCTCTGTAATGGGGGATGTGAGGGGATGTGAaactacatctttttttttttgagattgaAGACCTGTAGACCTGTACGATAAAAATaggtagaagaagaagaaaaagaaataacttGCATGGAATAAGGAATAAGCAGGGCTACGGTCACCACAGAGAAGGAAAGTGTCTGTAAAATAATGCTTCATTGCCTTTCCTGGACACTGTTCTAAATGGAATTACTCAGTCATTACACTGCAATCAGAAATCCAAACCCTCAAATCCACTGCTCGGTTAATCAGCACTCACCACAACGAGGATAACAtcaaaacaaaaatggaaagcgtacggaaaaataagagactccAGCACAGAGCAGAGGACAGTAGAGCTCGTCACGAGCTGCTGTTGATCCTGCGATCCTTTTCGAGGTCCAGATCGACTAAATTGAAATATTTAGCGAATCCTAAATATTTTTGGGTTGTATGGTTATAAACACCTGCAGTAAATCCCTAAATCACTCATGTATGAGGGCTATGATCAGCTTAAAGAGTTCTTCTCTCAGATTATGGAGATGCACTCGCCGCAAATTGTCTGTTTGTGTTAAGAGCGGCCATAAGTAGAGGTTTGACACAGCAGCACATTCCAGTAACCACATGCTAACCTTGACAACACCAAGAATACAAAAACAGCAGCACCCGGAGACACATCAGCACCATTcgtgaagatggatgatcctgAGGAACCGTACCCACAAGTAGATATAAACAGTACGTATGGAGGAACTTACTGTAGATATGGAAAAAGAATACCAGAGGTTCTTAGAATCACCTTTAACTGAAAAATCTTCCAATGAGGCAACATTTGAAGAACACTATGAGATTTTCTGACATTGAGGGGGTTCCCAATGCCCAATGTGATCtacaattatatttacattcttacactatattgccaaaagtatttgctcagTACTCACCCATTCAAATAATTGAACTCAGGtcttccaatcacttccattgTAACAGGAGTTTAAAACCAAGCACCTCATTAGCGacaacattagtgaaagaattgGTCattctcaggagctcagtgaagtCCAGCGTGGCACTGTGATAGGATTCCACCTGTGCAACAAATTCAATGGTGAAATTCATTCAATTGAATCAAAGTCAATTGCTATAGACCTCAAAACCTCACAtggccttcagattagctcaagaacagtagagcgtaGAGACGAgctgatacttttggcaataagTGTATCTAAAACTCCAGACATCCATGctcaatatacatttaaatcattttacacaAGCAGGTGACTGTAGCAAGTTAGGTGTCTTGTCCAATAACTTTAACTGGTGTAGGACTGGTGTTGGGCTCACCCAGTCAGGAAATTGAACTCTAGTCTATAACGGGAAAGGTGGGGCTGTTATCCACTATGCTACACCAAATGCCTATGCTTCACATGTATGTTTGCATCACTGACAGTCAGG

Function

NR:

description
PREDICTED: neurturin-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240218.3 True 3526 mRNA 0.44 3 16727199 16759637

Neighbor

gene id symbol gene type direction distance location
ndufa11 ndufa11,LOC107747164,LOC107685299 coding upstream 14769 16708054 ~ 16712430 (+)
LOC103042034 LOC108437262 coding upstream 25843 16698991 ~ 16701356 (+)
LOC103039567 diras1,diras1a,LOC108437290,LOC107592551,LOC107669021,LOC107745338,LOC100707435,LOC103373792,LOC101171042 coding upstream 202117 16506015 ~ 16525082 (+)
c5h19orf25 cunh19orf25 coding upstream 278145 16446720 ~ 16449054 (+)
LOC103039257 NA coding upstream 293119 16414203 ~ 16434080 (+)
pole4 pole4,LOC107680508,LOC107597157,LOC107747219 coding downstream 92455 16852092 ~ 16856550 (+)
LOC103044574 LOC103044574,LOC108437267,LOC106613702,LOC106573554,LOC103463524,LOC102231954,LOC107553533 coding downstream 100485 16860122 ~ 16863161 (+)
babam1 babam1,LOC107597198 coding downstream 171863 16931500 ~ 16936906 (+)
plvap NA coding downstream 185653 16945290 ~ 16946977 (+)
ano8 ano8,ano8b,LOC107680545,LOC107747324 coding downstream 216007 16975644 ~ 17010525 (+)
G43185 NA non-coding upstream 4553 16722439 ~ 16722646 (+)
G43180 NA non-coding upstream 11404 16715560 ~ 16715795 (+)
G43163 vmac,LOC107680554 non-coding upstream 23007 16702250 ~ 16704192 (+)
G43136 NA non-coding upstream 196755 16515657 ~ 16530444 (+)
G43097 sgta,LOC106613600 non-coding upstream 328933 16391430 ~ 16398266 (+)
G43196 NA non-coding downstream 26934 16786571 ~ 16787612 (+)
G43198 NA non-coding downstream 78854 16838491 ~ 16843005 (+)
G43233 NA non-coding downstream 270872 17030509 ~ 17031395 (+)
G43248 dazap1 non-coding downstream 278934 17038571 ~ 17047109 (+)
G43251 ndufs7,LOC107685366,LOC107747413,LOC107680537,LOC107597168,LOC107553547 non-coding downstream 298772 17058409 ~ 17063971 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other upstream 280912 16440931 ~ 16446287 (+)
LOC103036127 cunh19orf24 other upstream 742567 15978486 ~ 15984632 (+)
G42605 NA other upstream 1827951 14895062 ~ 14899248 (+)
eps15l1 eps15l1 other upstream 2592653 14070423 ~ 14134546 (+)
LOC103037142 LOC108429501 other upstream 2869838 13810833 ~ 13857361 (+)
LOC103044285 NA other downstream 56964 16816601 ~ 16819251 (+)
LOC111192574 NA other downstream 188743 16948380 ~ 16950360 (+)
dda1 dda1,LOC105913185,LOC107685208,LOC105012003 other downstream 252830 17012467 ~ 17017856 (+)
G43360 apba3,si:ch73-40i7.5,LOC108271288,LOC105910839,LOC107750992 other downstream 433901 17193538 ~ 17196116 (+)
adgrl2 adgrl2 other downstream 873459 17633096 ~ 17768954 (+)

Expression


Co-expression Network