pole4 (pole4,LOC107680508,LOC107597157,LOC107747219)


Basic Information

Item Value
gene id pole4
gene name pole4,LOC107680508,LOC107597157,LOC107747219
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 16852092 ~ 16856550 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240224.3
CCTGTGCCCCGCCCTCTCTCCGTGTTTACAGTCTGATTTGGCGGGAGAAGGCAGCGCGTGCTCGCGGCGCCGCCGTGTTTCCTCGTTTTTAGCCTCGTGTTTATGGTTTCGGTTCTCGGGGGGCGGATATATACTCGGCGCTGGAGAGACATGGCGGCGACTGTAGTGGAGAGCGGCGCGCTCGGGGACAGCGAGCTGGACCGGAGCGGAGCTGAAGAGCCGCGGGGTGAGGGTGAGGAGGACGGGGCTCAGCACACGAGCCCCGCGGGGGGACACAGCCGGCTCGCCAAGCTGCCGCTCTCCCGCATCAAAGCCCTGATGAAGGCCGACCCGGACCTGAGCCTGGCCAGCCAGGAGTCCGTCTTCATCATCGCTAAAGCCACGGAGCTCTTTGTGGAAATGATAGCCAAGGATGCGCTTGTCTATGCACAACAGGGAAAAAGGAAAACTCTGCAGAGGAAAGATCTAGACAATGCAATTGAGGCAATAGATGAATTTGCATTTCTTGAAGGTACTTTGGACTGACTGGTCACTTGCTCATTGGAGTAGAATATTTTTCTTCATCAAAACAAAAGACTGCTATTTTGTTTACTTCTGTACAGCCTGGGCTTGGGGATCATCTTAACCTTCAAGACAAATGTGGTTATTTTCAATGACTTTTATGTTGTGACTATGTACAGCTTTGAATATATTGATAAACTTACAAGCTAAGTTTGTGTGGTAAGTGCCAATTTTACTTGTGGATATGTTAGTCTCTTGCAACatgttgtaataaataattcctgtaata

Function

symbol description
pole4 Predicted to enable protein heterodimerization activity. Predicted to be part of epsilon DNA polymerase complex. Predicted to be active in nucleus. Orthologous to human POLE4 (DNA polymerase epsilon 4, accessory subunit).

NR:

description
PREDICTED: DNA polymerase epsilon subunit 4

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K03506 POLE4; DNA polymerase epsilon subunit 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240224.3 True 790 mRNA 0.51 4 16852092 16856550

Neighbor

gene id symbol gene type direction distance location
nrtn NA coding upstream 92455 16727199 ~ 16759637 (+)
ndufa11 ndufa11,LOC107747164,LOC107685299 coding upstream 139662 16708054 ~ 16712430 (+)
LOC103042034 LOC108437262 coding upstream 150736 16698991 ~ 16701356 (+)
LOC103039567 diras1,diras1a,LOC108437290,LOC107592551,LOC107669021,LOC107745338,LOC100707435,LOC103373792,LOC101171042 coding upstream 327010 16506015 ~ 16525082 (+)
c5h19orf25 cunh19orf25 coding upstream 403038 16446720 ~ 16449054 (+)
LOC103044574 LOC103044574,LOC108437267,LOC106613702,LOC106573554,LOC103463524,LOC102231954,LOC107553533 coding downstream 3572 16860122 ~ 16863161 (+)
babam1 babam1,LOC107597198 coding downstream 74950 16931500 ~ 16936906 (+)
plvap NA coding downstream 88740 16945290 ~ 16946977 (+)
ano8 ano8,ano8b,LOC107680545,LOC107747324 coding downstream 119094 16975644 ~ 17010525 (+)
abhd8 abhd8 coding downstream 161779 17018329 ~ 17027124 (+)
G43198 NA non-coding upstream 9087 16838491 ~ 16843005 (+)
G43196 NA non-coding upstream 64480 16786571 ~ 16787612 (+)
G43188 NA non-coding upstream 103414 16747826 ~ 16748678 (+)
G43185 NA non-coding upstream 129446 16722439 ~ 16722646 (+)
G43180 NA non-coding upstream 136297 16715560 ~ 16715795 (+)
G43233 NA non-coding downstream 173959 17030509 ~ 17031395 (+)
G43248 dazap1 non-coding downstream 182021 17038571 ~ 17047109 (+)
G43251 ndufs7,LOC107685366,LOC107747413,LOC107680537,LOC107597168,LOC107553547 non-coding downstream 201859 17058409 ~ 17063971 (+)
G43252 LOC108435930,LOC107597167,LOC107757917,LOC107685268 non-coding downstream 208797 17065347 ~ 17072232 (+)
G43253 NA non-coding downstream 220142 17076692 ~ 17080295 (+)
LOC103044285 NA other upstream 32841 16816601 ~ 16819251 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other upstream 405805 16440931 ~ 16446287 (+)
LOC103036127 cunh19orf24 other upstream 867460 15978486 ~ 15984632 (+)
G42605 NA other upstream 1952844 14895062 ~ 14899248 (+)
eps15l1 eps15l1 other upstream 2717546 14070423 ~ 14134546 (+)
LOC111192574 NA other downstream 91830 16948380 ~ 16950360 (+)
dda1 dda1,LOC105913185,LOC107685208,LOC105012003 other downstream 155917 17012467 ~ 17017856 (+)
G43360 apba3,si:ch73-40i7.5,LOC108271288,LOC105910839,LOC107750992 other downstream 336988 17193538 ~ 17196116 (+)
adgrl2 adgrl2 other downstream 776546 17633096 ~ 17768954 (+)
G43537 NA other downstream 1155623 18012173 ~ 18014499 (+)

Expression


Co-expression Network