babam1 (babam1,LOC107597198)


Basic Information

Item Value
gene id babam1
gene name babam1,LOC107597198
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 16931500 ~ 16936906 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240231.3
CCCTGCTGTAAACTGCGGGACCGGTAGATGGCGCCGCTGCTCCGACCCGCGCTCCCCGCCTCCAGTGAAGAGGACTCGGATGAGGAAGTGCTGAAAAACACGGCTGTTCTCTGAAGCTCACTGTGGTTTAAAGCTCTGGTGGCTGAGTACTATGGAGACTTCAGATCCAGGCCCAGCTGATGGAGAGGAGCGACCCAGGACCAGGTCAAACCCAGAAGGAGCAGAGGACCGACGCAGCAGTAGCGGCAGCTTATCCAGCACTCCACCACCCCAGCCTGCTGTGGGCAGTCGAGTAGAGGGTGAGGGAGAAGCCTCTAGTACAGACGGTGCTCCAAGTTCCACGTCTACCATCACCACGACTGTCCCTGCCCCTGCTGCTGCCTCTGTGGCCACGACTACAGCCAGCGTGACCGCTCCGGTTTCTGCTGCCAAAGACAGGCCCAAAGCCACCCAGCCCACTGTGCCACCCCAGATCCCCCCACCTGCTGAGCTGCAGATACGAGCACCTAGAGTCAACTGCCCTGAAAAAGTCATCATCTGTTTGGATCTATCAGAAGAGATGTCACTGCAGAAGCTGGAATCCTTCAATGGATCAAAGACCAATGCCCTCAATATCTCCCAGAAGATGATTGAGATGTTTGTGAGAACGAAgcataaaatagataaaaggcATGAGTTTGCCTTGGTGGTGGTCAATGATGATGCTTTATGGCTGTCAGGTTTCACATCTGACCCACGGGAGCTATGCAGCTGTTTGTATGACCTAGAAACAAATGTCTGTGAATCCTTCAACTTGGAAGATCTTCTCAATGtaatACTTCAGAAGATTGAGCTTCCACTGATGGACAATGTTCAGACGATTCCACCTCCTTTTGTGGTTCGCACTCTTCTCATCTACAGCCGTCATGCAGGCCAGCTACAGTTCAACCCGTCAGATGCCGTCAGCaAAATGTTGCGCTCtccttattttttctttgatgTCATTTACCTCCATAATGGAACAGATGAGCAAGTGGATGACAACAGCTGGAGGGATATATATGCATCATTCTCTAATTTGGACTCTAAAGGGATGTGTTACCGCTTCGAAGTGTCGCTGTGCAGCCCTGCTATCGAGCTTTACAACTGCATGGCTAAACTTCTGTGCCATCCACTGCAGAGACCCTTCCAAAGTCATGCCTCCTACAGCCTGCTAGAGGGCGATGATGCACAAGAGATCGAGGCAACGGTTTAGAGTAGATATTCTTTTTAGATATCTTGGTCCTGAGGTAGCCCTGTCCTGCAGATTTGGGGTTGGGGGTTGTTGTGCCAACATAACTATTCGGTTAATCGATTAATTACCAAGCCCTGCTTAAGTTGGTTTGTGTTTGAGATCAGTAATGATCTAATGCTGAAATGTGCAGGGCAGCGTATTCCAAGACTAATgatgctaacactgctgtaaAGCAATCCTGATGGGATCTGGAAAGGAAATTGAGATGACATCTTGCCAGTGTGGTGTTCCCCATTTTTCCCACTTGGATCACATCCTAATGATAAACACTGAAAGAAAGGGGAAgcctaagaaaaaaacatttctcacgGAAGGTTATTTGAAAGCCTGTGGACTGCTATGGACTTTGTTTAATGTTGAGACTTCTTTATCCACCAAATTCACTCTAGtacttttttctgt
>XM_022669703.1
agctgtgaACCAGAGCCCCTGTATAAACAAGTTCATTAACTAACGTAATTTATATGCATTTTGAGTGGCTGAGTACTATGGAGACTTCAGATCCAGGCCCAGCTGATGGAGAGGAGCGACCCAGGACCAGGTCAAACCCAGAAGGAGCAGAGGACCGACGCAGCAGTAGCGGCAGCTTATCCAGCACTCCACCACCCCAGCCTGCTGTGGGCAGTCGAGTAGAGGGTGAGGGAGAAGCCTCTAGTACAGACGGTGCTCCAAGTTCCACGTCTACCATCACCACGACTGTCCCTGCCCCTGCTGCTGCCTCTGTGGCCACGACTACAGCCAGCGTGACCGCTCCGGTTTCTGCTGCCAAAGACAGGCCCAAAGCCACCCAGCCCACTGTGCCACCCCAGATCCCCCCACCTGCTGAGCTGCAGATACGAGCACCTAGAGTCAACTGCCCTGAAAAAGTCATCATCTGTTTGGATCTATCAGAAGAGATGTCACTGCAGAAGCTGGAATCCTTCAATGGATCAAAGACCAATGCCCTCAATATCTCCCAGAAGATGATTGAGATGTTTGTGAGAACGAAgcataaaatagataaaaggcATGAGTTTGCCTTGGTGGTGGTCAATGATGATGCTTTATGGCTGTCAGGTTTCACATCTGACCCACGGGAGCTATGCAGCTGTTTGTATGACCTAGAAACAAATGTCTGTGAATCCTTCAACTTGGAAGATCTTCTCAATGtaatACTTCAGAAGATTGAGCTTCCACTGATGGACAATGTTCAGACGATTCCACCTCCTTTTGTGGTTCGCACTCTTCTCATCTACAGCCGTCATGCAGGCCAGCTACAGTTCAACCCGTCAGATGCCGTCAGCaAAATGTTGCGCTCtccttattttttctttgatgTCATTTACCTCCATAATGGAACAGATGAGCAAGTGGATGACAACAGCTGGAGGGATATATATGCATCATTCTCTAATTTGGACTCTAAAGGGATGTGTTACCGCTTCGAAGTGTCGCTGTGCAGCCCTGCTATCGAGCTTTACAACTGCATGGCTAAACTTCTGTGCCATCCACTGCAGAGACCCTTCCAAAGTCATGCCTCCTACAGCCTGCTAGAGGGCGATGATGCACAAGAGATCGAGGCAACGGTTTAGAGTAGATATTCTTTTTAGATATCTTGGTCCTGAGGTAGCCCTGTCCTGCAGATTTGGGGTTGGGGGTTGTTGTGCCAACATAACTATTCGGTTAATCGATTAATTACCAAGCCCTGCTTAAGTTGGTTTGTGTTTGAGATCAGTAATGATCTAATGCTGAAATGTGCAGGGCAGCGTATTCCAAGACTAATgatgctaacactgctgtaaAGCAATCCTGATGGGATCTGGAAAGGAAATTGAGATGACATCTTGCCAGTGTGGTGTTCCCCATTTTTCCCACTTGGATCACATCCTAATGATAAACACTGAAAGAAAGGGGAAgcctaagaaaaaaacatttctcacgGAAGGTTATTTGAAAGCCTGTGGACTGCTATGGACTTTGTTTAATGTTGAGACTTCTTTATCCACCAAATTCACTCTAGtacttttttctgt

Function

symbol description
babam1 Predicted to be involved in several processes, including positive regulation of DNA repair; protein K63-linked deubiquitination; and response to ionizing radiation. Predicted to act upstream of or within DNA repair; cell division; and chromatin organization. Predicted to be located in cytoplasm and nucleus. Predicted to be part of BRCA1-A complex and BRISC complex. Orthologous to human BABAM1 (BRISC and BRCA1 A complex member 1).

NR:

description
BRISC and BRCA1-A complex member 1

GO:

id name namespace
GO:0006302 double-strand break repair biological_process
GO:0045739 positive regulation of DNA repair biological_process
GO:0070536 protein K63-linked deubiquitination biological_process
GO:0031572 G2 DNA damage checkpoint biological_process
GO:0010212 response to ionizing radiation biological_process
GO:0070531 BRCA1-A complex cellular_component
GO:0070552 BRISC complex cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K20776 BABAM, NBA1, MERIT40; BRISC and BRCA1-A complex member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240231.3 True 1675 mRNA 0.49 9 16931500 16936906
XM_022669703.1 False 1601 mRNA 0.47 9 16932120 16936906

Neighbor

gene id symbol gene type direction distance location
LOC103044574 LOC103044574,LOC108437267,LOC106613702,LOC106573554,LOC103463524,LOC102231954,LOC107553533 coding upstream 68339 16860122 ~ 16863161 (+)
pole4 pole4,LOC107680508,LOC107597157,LOC107747219 coding upstream 74950 16852092 ~ 16856550 (+)
nrtn NA coding upstream 171863 16727199 ~ 16759637 (+)
ndufa11 ndufa11,LOC107747164,LOC107685299 coding upstream 219070 16708054 ~ 16712430 (+)
LOC103042034 LOC108437262 coding upstream 230144 16698991 ~ 16701356 (+)
plvap NA coding downstream 8384 16945290 ~ 16946977 (+)
ano8 ano8,ano8b,LOC107680545,LOC107747324 coding downstream 38738 16975644 ~ 17010525 (+)
abhd8 abhd8 coding downstream 81423 17018329 ~ 17027124 (+)
gamt gamt,LOC107747770,LOC107685360,LOC107757934,LOC107597217 coding downstream 116505 17053411 ~ 17057107 (+)
tmem38a tmem38a,LOC107730482,LOC107658508,LOC107751025 coding downstream 310175 17247081 ~ 17253787 (+)
G43198 NA non-coding upstream 88495 16838491 ~ 16843005 (+)
G43196 NA non-coding upstream 143888 16786571 ~ 16787612 (+)
G43188 NA non-coding upstream 182822 16747826 ~ 16748678 (+)
G43185 NA non-coding upstream 208854 16722439 ~ 16722646 (+)
G43180 NA non-coding upstream 215705 16715560 ~ 16715795 (+)
G43233 NA non-coding downstream 93603 17030509 ~ 17031395 (+)
G43248 dazap1 non-coding downstream 101665 17038571 ~ 17047109 (+)
G43251 ndufs7,LOC107685366,LOC107747413,LOC107680537,LOC107597168,LOC107553547 non-coding downstream 121503 17058409 ~ 17063971 (+)
G43252 LOC108435930,LOC107597167,LOC107757917,LOC107685268 non-coding downstream 128441 17065347 ~ 17072232 (+)
G43253 NA non-coding downstream 139786 17076692 ~ 17080295 (+)
LOC103044285 NA other upstream 112249 16816601 ~ 16819251 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other upstream 485213 16440931 ~ 16446287 (+)
LOC103036127 cunh19orf24 other upstream 946868 15978486 ~ 15984632 (+)
G42605 NA other upstream 2032252 14895062 ~ 14899248 (+)
eps15l1 eps15l1 other upstream 2796954 14070423 ~ 14134546 (+)
LOC111192574 NA other downstream 11474 16948380 ~ 16950360 (+)
dda1 dda1,LOC105913185,LOC107685208,LOC105012003 other downstream 75561 17012467 ~ 17017856 (+)
G43360 apba3,si:ch73-40i7.5,LOC108271288,LOC105910839,LOC107750992 other downstream 256632 17193538 ~ 17196116 (+)
adgrl2 adgrl2 other downstream 696190 17633096 ~ 17768954 (+)
G43537 NA other downstream 1075267 18012173 ~ 18014499 (+)

Expression


Co-expression Network