LOC103026177 (fgf22,LOC106613753,LOC106584266)


Basic Information

Item Value
gene id LOC103026177
gene name fgf22,LOC106613753,LOC106584266
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 14622178 ~ 14660025 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240250.3
AGCACACAGAGTGTAAAAGACAGAGTGGACACCCATTTACAGCTTTACTGCCTCGTTCGGTCGCACAGACGTGCTCTCACGGGTGGTTTTCTCTTtccctcagtctctctctctctctctctctctctctctctctctttccccctctctccccACTCTCACTCCTTTTCTCtgtgagacacacacatacacacacaattcacTCAGCTCATTCACAGGCACGGGTCAGACAGCCTCACGTTTCACCTTGCTCTGCCCCTGGCTGGGAGAAGAGGGAGCCTCTTGCAAGGTGCAGCCATCAGACAGGACACTTCTTCCACAGCTGAGTGAAGTTTGCTCAAGCAACCTGAGATCTCCAGAGCAACCCGAGAAGAGATGGAACATTCTTTGGAGATGGGATTACAAAGTGTCACATCAGTTCTGTGAAGAGCAAGGCTACCCACAGCAGAGGAACAGCACAGCCAGGTGCCTGGGCCCAGAGGAAGTCCTTTGAGTACCTTGACCCATGACTGTCACCCGTTGGACGAACTGGAAGCTTTGCAAGgttctttctgtctgttcttTCTGAACGGTTCTCGCTCAAAACATCCGCTGTTCACCGGGACGGTGTGGGGCAGTGAAGCGAACAGGGTGCAAAATCATGTCAAATGCTTGCGCAAGGTGCCCCTCGGGAGTTTGACCCACCATGTGCAAATGGAACTCGTCAGCCGAACTCACCTCCATAGGCTCGGCCCATCCCGGGCTACCCCTTCGACCCTGCACCCTCTTCCTCCGGCTGGCGTgcctttttcttctctttctgacGGGCACTGCTCTCGGAGGTTGCCCAAACGGACTGGGTCACGACCCCCTCCACTTGCTGGCACGGGGAACGAACTGCTCGTGGACTCTAGAGCGGCACACTCGCAGCTACAACCACCTGGAGGGAGATGTCCGGCTGCGGCGCCTGTACTCCGCCAACAAGTTCTTCCTCTGCATCGACAAGACGGGCAAGGTGGACGGCACCCGGCGCAAGAACTACCCTGACAGTCTGATGGAAATCCGATCTGTCAGTGTGGGAGTCGTCGCCATCAAATCTGTCAGCACCGGCCTGTACTTAGCCATGTCCAAAAAAGGCACACTCTTTGGATCGGCCAGATATAACCCAAGCTGCAAGTTTAAAGAGCGGATCGAGGAGAACGGCTACAACACGTACGCGTCCCTGCGCTGGAAACACGGCGGGAGGCAGATGTTCGTGTCTCTGAACGGCAGGGGGAAGCCGAGGAGGGGACATAAAGCACGGAGGAGACACCCGTCCACTCACTTCCTACCCATGCTCCCCACATAACTGCAGTCTCCAGTCAGCCTTATCCTTGGTGGCAAGAATATTAATATTGCAGACCCCCCAATCCCCAAGCGCCCCCCCCCAACATGACTGctgtatatttactttttttctactTCATTATTATGTTTTGGTTTTCTTCTGAAAGTGTGAGATAGTATGTTAACTTATAACTCCTTAGCTTCGGATAAAGCTTCTGTAAGGCTTCTAATATTGTACATAAGCACTTATACACTATATTTATGTTACTGCTGAAGAAGCTAAGCATTTACAATGTCTCTAACCAGCTGTTGTACAAGTAATTCACTCATTTCTGATCATATTGTACATACAAAAGTATCCAGACTCTCCTTTAAATGACTGGAGTTTATCTACATTACGGTGCTCTCATTACTGACACAGGCTTTTAGTTGTGCATGTTTGATCACCATAGACAAGATCTGTCAATATAAGATTAACATTCAGAAGACTGGGAGTTGCAGCCAGAAACTTCAGGATAATGTTAAGTGGCACTTACTGTATCAATAACTGACCAATAATTAATCATCCATCATTAGTACCCAACACTGATCAGAACACTGATGAGAAAGTAGCTAGCTATACTAATTCACTATTCCAATACAAGGAATACGAGGAAGTACAACTTTGTTGAAGGCaatgaataacaaaaaaaaacatcaacccAAACTTCCATTTGTCTGCTTTTAGCATTTTGTGGAGGAGAAACTCAGTTATGAAGCTCCTGGGATGATGAAGCGAAGTTCATTCCTAgcttattatattaatagatcTGCTGTTGCACTGAAGttttaacacaaattaaataagGTGAATAAAGCCATctgtaatgcattataaatacaggATTAATTAGATGTGTAAGGTGTCTTACATTTTACCGACATCATTGATAGCTTAATGTTAAAGCATTGAATTTGTTTTGgttcattttttatcattcaCCTGTATTTTCTTAGCTATAAGatcctgattttttaaaaatgcttcttTGATAATATCTAAGCATATCAGTTACAGGATtgtctgtaaaacacacacacacacacacaccctacatcCACTTCTGTCCCGTCaacatgctctctctcacacagcgTTCACCACAGTGAGGGTGGTCAGGTCAGCTTTAACAAGAAACACTCCCCTGAACATGTGTTACAGTGCGACCCGAACACAGCTCATCCATTATAACACAACACAGAGTCTGACAGCTTGTATACTGGTCTAATTCTCCAAATCATGTTCTGTATTATGGGTTCCTATTAAGTCACACTAACATGTTCTCTCCTCAACCTTTAGAACACTGTAAAAGTTTCAACACTCTTAGTCACCGTGTTCCCCAGTGGTGGTGTCGGTTCTGTTCATGTATTATCAGGAGTCTGCTTCTGTCTCTACATCCTCCTGTTCTGACAGCTAGCGCTAAACATCAGCTGCTTAATGGTTAGCAGACACTAGGACTCAGGAGATACTGGTGTCTGGGGTCTAGCATCGGtaataaagttaatttaaaaCTTATATGTGTTCTGCTGCACATTACTGATCACCTGTTTAAAACGTAATTTGTAAACTTGGTCCATggatttctcttttaaaatcATGTAATCTGACACATTTAAAGCCTAGACATTTGCCAAGGTTGGGTGAGTCCTTAAAAGgactttttctttacttcaaGGGTCCCGCCTCTTGTTTTGTGGCACACAAATGTGCTTTTTCTAATTATTAAAGCTAGTATTTTGAgatgtttgtagctgtgctccaaaatctaggaAGCAGCCATAGTAGGGGAAGGAAAGATCATTCATTTTTTCATGAGCAggagaaaaaacatattaatatattcatataattcatattcatacatattCTACAATTAATATTGTGGAATGACCCTAATTGCGCTTTTCCACTGACATGGAACCAGCACCACTCTTCgcgaacctaattttgaaccacCAACCAGAAACGTTCGTTTGCAGCGGGAaccaaagaatactaggttcttcagcgTGAACCGTGGTGATATCTGTAGGGGTGTCTGTTTGGGTGCAACACCCTCTGTTGATGAAGTATGATGTGACATTTtgacggttccactaaaactggttcACTGAAAAGCACCACAGGTCTTAGGAGCCTGAATGGAACTGGTTTAAGAGTTCTTCAGGAGGAAAAGTGCTATGAGTGGTCCTCTGGTTAAGGGTTGAACAGTGTTTGTGGAGAAATTTCCCTAAATTCCAATGTATTAAAGTTCACGGGCTGGTACATCTCAGCCCTACACTGACACATAACCACTAAACAACACAGCGAATAAAAGCTACAAGCAGCTCCCTATATTTATCCTATTTCGTGCCTGTCTTCTGTCTGATAGTCAAAGGCTCTTTACCGCTGTCCTCGCCCTCACAACAGTCCAGGAATTCagtcctctctctttttttcttggcTTTAAGGTAAGGCCATCTGTTTATGCCAGTCTTTTGCTCCGAAAGCACAGAAACAAAATGAGGAGCCTGTAATTATCATTGTTGCTCTACTGTCCTGTCAGTTCCCTCGCCAGAGAGACCAGAGTGATCTCTTGGCAGCGCATAGGCCAGAAGATCAAAGCTATGGACCTTTGATCAGCAGCAAAACCCCCTAAAAACCTCTCCATGGAAAATCAAGGTGGAATGCTTCAAAGGGAGGAGTGCACAAGGACACGGACAGTTCTGCAAGCATGTCCTCTGCCAGCGGTAAGACTGTGTGGCAGTCTTGGGGTATTTTTTCACAGTGGGGAACTCTAGTCAGCCCATGGGCGGCAAAAGCGTCAAAGAATGGGACTTCTGCGATGATGCTCATTTCTGCTAGATAGAAAGTCTAGTCTTAGTGTGTTGGTACTGTTTTAGAACATGAACATTCTAAACTAAAAGACATTACATATGCTTTATTTAAAGATGGTCAGTGATGTTTTTCAGGCTATTAGAAGGAATGGAGcactgtgttctgtgtttgtttcttaCAAAATTATTTCCACCTGTCGTAAAACAAGGCAAGATCGGTTGATTCCTGTGTCATTTCATTGTAACATTGGTGGTTATACACTTACAATATAACACACATGACGACTCTGTTCAATAAAAT

Function

symbol description
fgf22 Predicted to enable fibroblast growth factor receptor binding activity and growth factor activity. Acts upstream of or within cell proliferation in midbrain; midbrain-hindbrain boundary development; and roof plate formation. Predicted to be located in extracellular region. Predicted to be active in cytoplasm. Is expressed in midbrain; midbrain hindbrain boundary; midbrain hindbrain boundary neural rod; otic vesicle; and telencephalon. Orthologous to human FGF22 (fibroblast growth factor 22).

NR:

description
PREDICTED: fibroblast growth factor 22

GO:

id name namespace
GO:0033278 cell proliferation in midbrain biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0021509 roof plate formation biological_process
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K04358 FGF; fibroblast growth factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240250.3 True 4462 mRNA 0.44 3 14622178 14660025

Neighbor

gene id symbol gene type direction distance location
LOC103044493 hcn2,LOC108429559,LOC107569045,LOC107569931,LOC107719599,LOC107655221 coding upstream 88008 14483941 ~ 14534170 (+)
bsg NA coding upstream 141724 14462650 ~ 14480454 (+)
LOC103041829 NA coding upstream 210143 14359209 ~ 14412035 (+)
LOC103042131 LOC108424984 coding upstream 276998 14334095 ~ 14345180 (+)
LOC103040508 LOC108414270 coding upstream 289139 14312498 ~ 14333039 (+)
LOC103026778 NA coding downstream 51349 14711374 ~ 14725957 (+)
LOC103045821 plak,LOC108438667,LOC108270763,LOC107562072,LOC107680531,LOC107753847 coding downstream 174199 14834224 ~ 14868739 (+)
LOC103022023 NA coding downstream 312236 14972261 ~ 14994616 (+)
LOC103023991 rbbp7,rbb4l,LOC103023991,LOC108438657,LOC105893332 coding downstream 385249 15045274 ~ 15051775 (+)
rtel1 rtel1,LOC107579445 coding downstream 402602 15062627 ~ 15089931 (+)
LOC111192557 NA non-coding upstream 61809 14538321 ~ 14560369 (+)
G42521 NA non-coding upstream 208432 14412289 ~ 14413746 (+)
G42527 NA non-coding upstream 244148 14377478 ~ 14378030 (+)
G42496 fam32a,LOC107757479 non-coding upstream 315237 14303418 ~ 14306941 (+)
G42469 NA non-coding upstream 461467 14160405 ~ 14160711 (+)
G42571 LOC103031381 non-coding downstream 25274 14685299 ~ 14688753 (+)
G42583 NA non-coding downstream 68435 14728460 ~ 14733285 (+)
G42579 NA non-coding downstream 81249 14741274 ~ 14749183 (+)
G42590 NA non-coding downstream 105681 14765706 ~ 14768714 (+)
G42599 cdc6,LOC107753851,LOC107718871,LOC102777898 non-coding downstream 210331 14870356 ~ 14877360 (+)
eps15l1 eps15l1 other upstream 487632 14070423 ~ 14134546 (+)
LOC103037142 LOC108429501 other upstream 764817 13810833 ~ 13857361 (+)
LOC103034435 NA other upstream 1000136 13617083 ~ 13622042 (+)
LOC103032215 NA other upstream 1099921 13509020 ~ 13522257 (+)
G42208 ier5 other upstream 1171701 13448592 ~ 13450477 (+)
G42605 NA other downstream 235037 14895062 ~ 14899248 (+)
LOC103036127 cunh19orf24 other downstream 1318461 15978486 ~ 15984632 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other downstream 1780906 16440931 ~ 16446287 (+)
LOC103044285 NA other downstream 2156576 16816601 ~ 16819251 (+)
LOC111192574 NA other downstream 2288355 16948380 ~ 16950360 (+)

Expression


Co-expression Network