ptgfr (ptgfr)


Basic Information

Item Value
gene id ptgfr
gene name ptgfr
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 15130977 ~ 15136409 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240255.2
gttaaatggATTTTTTAGCACTCAGTGTGAAAGAACAATTAATTACTCACATCTTATTGTAATTTCTGAGCTGCACAGATCTCTCAGAACAACTGAACGCTGGAAGCAACAACTGCCAGATCCTGACTGTATTAGTATTTCTTGGCTACAACTAGACTGGTCAATCATGTCTCACAATGGGACCCCAAAAGCTGAACCAGCAAGCAATGTCTATAATGAGAGCTGTGGAAATGAAGACATGTCAGTCACTTCCTCAGTCATAACGATGACAGTGGGCATCCTCTCCAACACGCTGGCTCTCTTCATCGTTTTAAAAGCCTACCGTCGTTTCCGCCTTAAGTCCAAAGCTTCCTTCCTGTTCTTTGCCAGTGGTCTGGTGTTGACTGACTTTCTGGGTCATGTTATTAATGGCACCATGGCTTTGTACGTGTATGCCTCGGGCAAACACTGGAAGAACTTTGACCCCAAGCAGGTGTTTTGTGAGTTCTTTGGGGTTTGCATGGCTTTCTTCGGTCTGAGTCCCCTGCTGCTCGGAAGCGTCATGGCCGTGGAGCGCTGCTTTGGAGTGACTCGGCCTCTCTTTCACTCCATGGCTTTGACCGCCAACCGTATAAGCAAGCTGCTGGTGCTCACCTGGCTCCTGGCCCTGCTGGTGGCCCTGCTGCCATTGCTAGTGCAGCGGCCCTATCAGGTTCAGGGGTCCAGAAGCTGGTGCTTCTTCCACATGGTGGGGACACGCGATTGGTTGGACATTCTTCTCCCCATGGTCTTCTCTCTGTTGGGACTTCTGGCTCTTCTTGTCTCAGTTGTGTGCAACTCTGTGACTGGATTCACCGTGCTGTGGTCCAGACTGCGCAGAGAACAAAACCACCACCGCCATCACAGAAGCTCCATCCACACTGAGATGGTCTGCCAGCTTCTTGCAATCATGATTGTATCGTTGATGTGCTGGGGACCTTTGCTGTTTAAAATCATTATTCTAACACTCCAAGAGCAAGGAAAAGACGAATACAGGCAGCTGCTTCTGACTGTTCGTCTGGCTACATGGAACCAGATTCTTGACCCATGGGTGTACATTCTCCTGCGCAAGGCTGTCCTGAAGAGGCTCTTCCTGCTGACACAAGGGTGTCGTAGCCCACGTCCAAAGCACACATTTGGGTGGAGGTGTAGTGCTCTGATGAGTTCTATGGAGACCAGCACCTCCGTGAACAGCAGACCAGAATTCATCCACTTGAAAGATCTATCACTGGCAGGCACCGCCATGAAACCCATTGGGCAAATCCTCTAAGCATTAGGAGAAGGGTTTAGGCCTGGATATGGTCTGAATATAGGAGTAAAGGATATAAAATGGGAAGTGAAGACAGAATGTACTCTTGTAGACACAGATCCTGTGAAAAGTGCAAACAGTACAGATTAGAGGAACAAATTGGAAATGTTGAAATGTAATGAAactttatatgtgtgaatgtaatgatgatatatgtAAGTAACTAAAATATTATAGTGATGATAAGATCATTGGGTAAAACTCTACTCTGTACAATTCTACAGAATTCTGGAGGCTCTAATGCCATGTTGGAGTGTTttagcctggatacaagatgcaATATGGTTAAGTATGGAGGCacacaggttctgtatggaatTATTCGGCACATTTAAATACAGATGTTGTAACTGGCCTTTAGCTTATGCAAAGTTATAGCCTTATGGTCCAGCAAGATTGAAGGCCAATGAAGTGTGCTaatctggtggagacattcCTGAAAAACTGTTGTTGTTTCCTgcaaacattacattatattacattaaaggTTTCCTTCCGTctcccttgtctgcagtagctagtaaaagaaatcctcagaaatacaagttgATCAGAGAAATATTAGGTGTGTACatcaaccagtgagttcatggccttgCACACAGTGGGTCCTGATCTGAGGTGGAGCTtgcagcttctgtttacagagctagttagtgttagctatcttgtgtaagtaactgtaggtttaaattgtATCTCCGGTAGATTATGTGTTTTAAGGTGACCTTacatatacactagggaagcacagtttgacaatGTAGCACAAcatgacagaacaccggtcaaagcgggTGACGTTCGTGTCAGATTTTATGATGTAGGGCGGACTCTGAGGTCTCGacgtggtgaaactgctcaaGCACCGAATCACCAAGGCTGAGGTGAGAGATTAGCAGCGTTAGTTTAGatgaaagaaacattttaaaatgaataaaaaaacaatggaatgagacctttaaagtaatgtaatgtaatgtttatgggtgagcattatcttgctgaaaaatgccaattGGAAGCCCTGCAATGAGAGGCAAAAACTGCATGCCTTTGTTCTGCTGCAGTCTGGGGTCTTCTCATATTTCTTCTTGTGAAAACTTACATTTAATCCATGTAAATCCTGGGAAAGCTCATGAAGAGATTTTGAGAGTATTGTGTGTCATAAAGACAGTTTGAGGCTTCTGTAAGGTATCCAAACATTGACTAGagccatttttttaaagcttgacAGCGTTATTTTAGTGTCGTCTGTTGGGTGTTCTGTGCTATTTCACACCTGAGATGTTAAGTCCCAGCAAGACGTGAGCTGCATGTTCAGTGACGCGGTACATCACATTAAGTAAAGAATcaagaaatgtataaataaacagGGTTAGGCCTCAACTGTCCTTCCATATaaacaagagagtgagagagagaaagcaaatcCCATAGGGACAGGGGCGCTGAACCCATCTGATTTATGATAATTCCTCTGTCACATACTTTTACTTTGCTTACAAGAGGCAAGCTATTTCAACTTTTAATCCAGCAGTTCACTTTACACTACATTCACTCATCTGCTTCTTCCTAGTAGGTCCAGAGCCTATTCCGAATCACTCTAGCCTTTTATATTACCTATCATGTGGGGTTTTGGTACACAGAGCAAACCCACACAACCATTGGCAGAGTTCAACAAACTCATTCCATAAAGAAACCAGAGAGAGAACTGTGcggcacaaacacacacacaca

Function

symbol description
ptgfr Enables prostaglandin F receptor activity. Predicted to be involved in adenylate cyclase-activating G protein-coupled receptor signaling pathway; inflammatory response; and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including gill; heart; liver; muscle; and pleuroperitoneal region. Orthologous to human PTGFR (prostaglandin F receptor).

NR:

description
prostaglandin F2-alpha receptor

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0004958 prostaglandin F receptor activity molecular_function

KEGG:

id description
K04262 PTGFR; prostaglandin F receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240255.2 True 3067 mRNA 0.44 3 15130977 15136409

Neighbor

gene id symbol gene type direction distance location
zgpat zgpat coding upstream 33764 15091371 ~ 15097213 (+)
rtel1 rtel1,LOC107579445 coding upstream 41046 15062627 ~ 15089931 (+)
LOC103023991 rbbp7,rbb4l,LOC103023991,LOC108438657,LOC105893332 coding upstream 79202 15045274 ~ 15051775 (+)
LOC103022023 NA coding upstream 136361 14972261 ~ 14994616 (+)
LOC103045821 plak,LOC108438667,LOC108270763,LOC107562072,LOC107680531,LOC107753847 coding upstream 262238 14834224 ~ 14868739 (+)
LOC103026176 bt3l4,btf3l4,LOC103026176,LOC105028135,LOC107562065 coding downstream 1855 15138264 ~ 15141396 (+)
LOC103027567 LOC108438649,LOC108270756 coding downstream 7060 15143469 ~ 15170638 (+)
LOC103027889 mob3c,LOC103027889,LOC108438648,LOC108270829,LOC106574029,LOC106613547 coding downstream 76850 15213259 ~ 15225170 (+)
mknk1 mknk1 coding downstream 90741 15227150 ~ 15234385 (+)
atp5b atp5b,LOC107723059,LOC100693141,LOC102199207 coding downstream 116506 15252915 ~ 15257121 (+)
G42648 txlng non-coding upstream 69530 15058618 ~ 15061447 (+)
G42647 txlng,LOC107665847 non-coding upstream 73302 15057215 ~ 15057675 (+)
G42637 txlng non-coding upstream 76097 15017800 ~ 15054880 (+)
G42636 npepps,LOC107098842,LOC102793525 non-coding upstream 111442 15014943 ~ 15019535 (+)
G42633 NA non-coding upstream 120003 15010480 ~ 15010974 (+)
G42763 NA non-coding downstream 28306 15164715 ~ 15165694 (+)
G42807 NA non-coding downstream 241592 15378001 ~ 15378608 (+)
G42810 NA non-coding downstream 278268 15414677 ~ 15415189 (+)
G42813 NA non-coding downstream 284303 15420712 ~ 15421122 (+)
G42814 NA non-coding downstream 284743 15421152 ~ 15421453 (+)
G42605 NA other upstream 231729 14895062 ~ 14899248 (+)
eps15l1 eps15l1 other upstream 996431 14070423 ~ 14134546 (+)
LOC103037142 LOC108429501 other upstream 1273616 13810833 ~ 13857361 (+)
LOC103034435 NA other upstream 1508935 13617083 ~ 13622042 (+)
LOC103032215 NA other upstream 1608720 13509020 ~ 13522257 (+)
LOC103036127 cunh19orf24 other downstream 842077 15978486 ~ 15984632 (+)
LOC103040819 reep6,LOC107698004,LOC107745351,LOC107658751 other downstream 1304522 16440931 ~ 16446287 (+)
LOC103044285 NA other downstream 1680192 16816601 ~ 16819251 (+)
LOC111192574 NA other downstream 1811971 16948380 ~ 16950360 (+)
dda1 dda1,LOC105913185,LOC107685208,LOC105012003 other downstream 1876058 17012467 ~ 17017856 (+)

Expression


Co-expression Network