G47218


Basic Information

Item Value
gene id G47218
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 10566654 ~ 10567299 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU53710
TAAAGTTAAGCCATATAATAGAGTTAAATGACAAATTAGCTAAGATAAGGAAGAAAGGATGGACGGAAACAGGGAAGTAAGCAAGGAAGGATGGAATGACAGAGGTCGGGAACAGGGAACTAAGCGAGGAAGGACGGAAAAACAAAGGTCGGGATCAGGGAAGTTAGGTAGGAAGGAAGATAGAATGTAAAATGGGAAGTTGGAAGGAAGAACAAAGAACTAGAAGATGGAAGGAGTGAAGAAAGAATGAAGAACGAGAAGAGGGAAGGAATGTTGGAAGACGAAATGAAGGACAGGAAGAAGGGTTAAGAAATGAACAGGAAAAAGGAAAGGTAGGAATGAAAAAATGAAGAATAGAAAGAGGGGAAAAAAGTTAAAAGAAACAAGGAAGGAAGAAAGAAGAGATGGGAAGAAATTAAGGACTGGAAGAGGGAAACGTAGATTTAGAACAGAGCAGGAGGGAAGGAATGAAGACAAGAAAGACAAGGAATAAAGGCAGGCAGGAAGGAAGGGAGGATAATACTTACATTTTAATGGTGCTCTTTTTGACATTTTTGAGCTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53710 True 563 lncRNA 0.39 2 10566654 10567299

Neighbor

gene id symbol gene type direction distance location
CI01000006_10518326_10566504 SFSWAP coding upstream 150 10518326 ~ 10566504 (+)
CI01000006_10363884_10364804 NA coding upstream 201083 10363796 ~ 10365571 (+)
CI01000006_10177090_10192651 NA coding upstream 373135 10177090 ~ 10193519 (+)
CI01000006_09998680_10008491 LHX5 coding upstream 557606 9998680 ~ 10009048 (+)
CI01000006_09918611_09921465 MZT2B coding upstream 644861 9918611 ~ 9921793 (+)
CI01000006_10574971_10578629 NA coding downstream 7309 10574608 ~ 10578964 (+)
CI01000006_10593624_10605226 NA coding downstream 25945 10593244 ~ 10606273 (+)
CI01000006_10707037_10743311 MMP17, MMP17A coding downstream 139645 10706944 ~ 10743594 (+)
CI01000006_10747943_10768998 ULK1B coding downstream 180644 10747943 ~ 10769038 (+)
CI01000006_10772911_10773300 NA coding downstream 205004 10772303 ~ 10773300 (+)
G47217 NA non-coding upstream 48732 10517711 ~ 10517922 (+)
G47109 NA non-coding upstream 57902 10507950 ~ 10508752 (+)
G47148 NA non-coding upstream 70715 10493349 ~ 10495939 (+)
G47140 NA non-coding upstream 83489 10462462 ~ 10483165 (+)
G47106 NA non-coding upstream 85411 10403274 ~ 10481243 (+)
G47220 NA non-coding downstream 48026 10615325 ~ 10616018 (+)
G47213 NA non-coding downstream 97667 10664966 ~ 10672592 (+)
G47175 NA non-coding downstream 234287 10801586 ~ 10805053 (+)
G47252 NA non-coding downstream 258361 10825660 ~ 10825933 (+)
G47194 NA non-coding downstream 537362 11104661 ~ 11185170 (+)
G47145 NA other upstream 54848 10485358 ~ 10511806 (+)
G46652 NA other upstream 407403 10156579 ~ 10159251 (+)
G45416 NA other upstream 1731957 8818814 ~ 8834697 (+)
G45355 NA other upstream 2354266 8209555 ~ 8212388 (+)
CI01000006_08198328_08199463 NA other upstream 2366509 8197881 ~ 8200145 (+)
G47159 NA other downstream 848930 11416229 ~ 11521703 (+)
G47318 NA other downstream 1056968 11624267 ~ 11638252 (+)
G48094 NA other downstream 1710321 12277620 ~ 12279541 (+)
G48081 NA other downstream 1809707 12377006 ~ 12384827 (+)

Expression


Co-expression Network