xxylt1 (xxylt1)


Basic Information

Item Value
gene id xxylt1
gene name xxylt1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 8102275 ~ 8162958 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007252576.3
AATTCTGTGGATTATTATCTCCGGCTTcacgcgctgctgctgctgctgctggtggactGAGGGAAGCTggagggaaataaataaatatgAACTTCAGAAGATACCCAGCCTGGACAGCCTGTGAAGAGAGACGCCCCATCCTGCCCGAGGAGCCATGAGTGTCCTGCGCTGGTTCTCTGCCACTGTGGGCCGGATCAGCACCTTCAGATCCTATCAGATCGTGCTGCTGTTGGCCGCAGCCCTGGCCGTGATGGCGTTCTACTACTTCGGCTCAGAGAAGCAGAACTTCTCCAGCACCACGAAGCGAATAAAGCAGAACCATGCGAGCCACAACTCCAACCGCAACGACGCTGACCTGTCTGAGGACACCAGGTTCATCCATCACGAGGAAAAGAGCGGGATCAGGCAGCATGACGATGGGTTTGAGAAGAGGCCAGGTGAGCCCCAGCAGTATCACGCCCTCATGATGTTCACCAAGGTGGACAAGAGCCGGACTCTGCAGAATAAGTTTGAGGTGGCCATGCGCTCCATGGCTAAACACGGCCGGTTCCTGGAGGACGAGGTCCTGGTTCTTCACTTCGTCTCTGATGAAGCCAGTAAGGAGCTGGGTGTGAGGATGCTGcctgagctgctgatggaggcAAGCTTTCTGTATGAGGTGGTGTTCCATGATGTAGGTGATTTGACAGGGAAGCTGTTCCCCATTGTGGAGGCCATGCAGAGGCACTTCAGTGCAGGCTCTGGGGCCTACTACAGCGATGCCATCTTCTTCCTATCTGTGGCCATGCATCGTATCATGCCTGCAGAGATGAAGCGTATTGTGCAGCTGGATCTGGATCTGAAGTACAGGAGTAATATTCGAGATCTCTTCCAAGAGTTCAGACTCTTCTCTCCTGAAGCGGTGATCGGAATCGTCCGAGAGATGCAGCCAGTATACAGGCACACCTTCTGGCAGTACCGCAAAGAGAACCCCAAGTCCCGCGTGGGCGACCCCCCTCCACAGGGTCTTCCGGGCTTCAACAGCGGGGTGATGCTACTGGACCTGGAGGCCATGCAGCGCTCGGCTCTCTACAACCAGCTGCTGGAACCCGAGAGAGTGGCCCGTCTGGCTGAGCAGTACCACTTCCGGGGGCACCTCGGCGACCAGGACTTCTTTACTATGATTGGCATGGAGCACCCGGAGCTGTTCCACCAGCTTCCCTGCGGCTGGAACCGGCAGCTGTGCACCTGGTGGAGGGACCACGGCTACGGGGACATCTTTCAGCTTTACTATCACTGCGAGGGACCTGTGCACGTTTACCACGGGAACTGCAACACTCCCATACCTGATGACTGAGCGGGACTGTATGAGTTTATGAGTCTCTTAAGTTTACACTGTCTGATGGAGTGCAGCATGGTGCTGTGAGAAGAAGTGAAGATTAGTGCGTAGTGAGTATAGATACATGCTGCTCAGGATCCAGAATGGATTTAATGAAGACCATGGCTACAACGATTATGGAATCCAATATGCCATACCTTTTACGTATTTTTCGTTTAGTATTCATTTGCATCATATccatacattatattacattgacATGCCTACTCCCATGGAACAGGAACTAATatcttgtcccatgacttttgccatgtcactcagaagctaaagaacaattATGCAATTAGGCTGGAATGACCTTTGGGATGCAGTATGTGTGTATGGCCTGCTGCACTGAATGTACATGTGATTTTGTGCATTCACATAGACAGGTGTAGCCAGAAgccaccggtcacaatcatttccACTTACTGCACTGTCATTTGGTGCATGTGTCTCTGTGGATCGAGAAAGATAAAATTTAGTAAATTAAATGTCTAATTAATCTGCCATCCACCAATCAGCCTTCGATAAGTTCTGATAATTTGGAAAATGGCCAaggtttaacctcactcacaagatatcacctcacagcttatacagaTATAAGTGTTTCCAAGCCATTTCCTAAACTTAACACTTCTTGATCAGTTTATATACtgcagtaccactttaaaataaggctactttataaagagtgtataatgttgctgtccaatgaaaaacaagcatc

Function

symbol description
xxylt1 Predicted to enable UDP-xylosyltransferase activity. Predicted to be located in membrane. Predicted to be integral component of endoplasmic reticulum membrane. Orthologous to human XXYLT1 (xyloside xylosyltransferase 1).

NR:

description
xyloside xylosyltransferase 1-like isoform X1

GO: NA

KEGG:

id description
K23800 XXYLT1; xylosyl alpha-1,3-xylosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007252576.3 True 2090 mRNA 0.50 5 8102275 8162958

Neighbor

gene id symbol gene type direction distance location
pcdh17 pcdh17,LOC107572292,LOC107687749,LOC107739552,LOC107718221 coding upstream 1088488 6877772 ~ 7013787 (+)
lims1 lims1,LOC107687747,LOC107715819,LOC107572539,LOC108439929,LOC107551808 coding upstream 2266188 5814514 ~ 5836087 (+)
adamts17 adamts17 coding upstream 2323001 5762651 ~ 5779274 (+)
cers3 cers3 coding upstream 2351910 5722876 ~ 5750365 (+)
lins1 NA coding upstream 2384340 5709700 ~ 5717935 (+)
lsg1 lsg1,LOC107715771,LOC107736209 coding downstream 198879 8361837 ~ 8377825 (+)
tmem44 NA coding downstream 219298 8382256 ~ 8400857 (+)
atp13a3 atp13a3,LOC106613657 coding downstream 296557 8459515 ~ 8498939 (+)
col6a1 col6a1,LOC107685955,LOC107715812,LOC107718214,LOC107677507 coding downstream 389012 8551970 ~ 8636478 (+)
col6a2 col6a2,LOC107685953,LOC107718216,LOC107551805 coding downstream 498041 8660999 ~ 8701071 (+)
G40916 NA non-coding upstream 133852 7968116 ~ 7968423 (+)
G40910 NA non-coding upstream 312669 7788450 ~ 7789606 (+)
G40902 NA non-coding upstream 389692 7712334 ~ 7712583 (+)
G40842 NA non-coding upstream 589593 7509178 ~ 7512682 (+)
G40839 NA non-coding upstream 606715 7495329 ~ 7495560 (+)
G40947 NA non-coding downstream 753 8163711 ~ 8164067 (+)
G40949 NA non-coding downstream 1994 8164952 ~ 8165271 (+)
G40950 NA non-coding downstream 2433 8165391 ~ 8165661 (+)
G40952 NA non-coding downstream 4821 8167779 ~ 8169537 (+)
LOC111192502 NA non-coding downstream 246504 8409462 ~ 8454415 (+)
LOC107197696 NA other upstream 275361 7826523 ~ 7826914 (+)
G40756 NA other upstream 1568601 6533365 ~ 6533674 (+)
snrpa1 snrpa1,LOC107742305,LOC107691971 other upstream 2789931 5305687 ~ 5312344 (+)
LOC103046723 LOC108439632 other upstream 3586664 4504397 ~ 4515611 (+)
G40318 NA other upstream 3966690 4134510 ~ 4135585 (+)
LOC103028988 tdo2b,tdo2,LOC108428450,LOC107551803,LOC107718213,LOC107685956,LOC107715811 other downstream 349146 8512104 ~ 8524313 (+)
LOC103027717 LOC108428455 other downstream 555602 8718560 ~ 8762792 (+)
LOC103022991 NA other downstream 758970 8921928 ~ 8935486 (+)
LOC103037553 LOC107753862,LOC107597184 other downstream 1832751 9995709 ~ 10022964 (+)
G41828 LOC108429549,LOC108271147 other downstream 3408268 11571226 ~ 11580329 (+)

Expression


Co-expression Network