LOC103033538 (rlbp1,rlbp1a,LOC107737004,LOC107685234,LOC107600717,LOC107594728)


Basic Information

Item Value
gene id LOC103033538
gene name rlbp1,rlbp1a,LOC107737004,LOC107685234,LOC107600717,LOC107594728
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 10733294 ~ 10743346 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007252600.2
atgattacaaaatcagatgagcatgaattatttttaatttattacaaaaaagcatTTTTCGTACAAGCTTGTGAGAATCGTTaacataaaagaaacaaaaactcttccaaaatgtttatattttaacatttttgttctaAAGGCTGCAGgagacacactaacacacaccactaccATGTGTCCACCACACCAGTGTtattgcagtgctgagaatgatgacccaccacccaattAACAGCTGATCTCTGGTGGTctgctggtgaaaaaaatataataaaatgtgcagagaaacagatacaggactacagtctttatagaaattatagaactacaaagtgctgcaaagtgtttctgttctgttttctgGCCCACCTTATGTGGGCAGTGTTATTATGTAAATTAGTTGTGAATTCCATGCTGTGGAATCAGTGTGTGACACTTCACATCATTCTGCTCTGCTTGCTGCCCACCCAGCTCCAGCCCCACGCCCACCCCCCCTGCCAACACCTCCCTCTAGAGTCCCCTAATGTACCCCAGACACTCTTTCTCAGGCTCTTCAGACCAGCCTTAGACTGCGCTCCAGCTCAGtgtttgtgGCTGCTGGAAGATTTCAGCATCATGGCTTCGACCGGAACTTTCCGCCTGGTGTCGGAAGAAGAGCAGGCTCTGCGATCCAAGCTGGAGCACTTGACCGTGAAAGACCATGGGCCAGTGTTTGGGCTGTGTAAGAAGCTGCCCGATCACACGGTACAGAAGGCAAAAGATGAGCTGAACGAGACAGAGGAGAAAAGGGTGTCCAGTGTGAAGGAGCTGAGGTCCCTGATCAAGGAGAAAGCTGGAGAAGGAGACAGCCTGTCTGTTGGTGTGAGGGAAACATTTGGGGACAAACCAGACTCTCTCCTTCTGAGGTTCATCCGTGCCCGCAAGTTTGACGTGACCAGGGCACATGAGCTTATGAAGGGTTATGTCCGCTTCAGAAGGGACTACCCAGAGCTGTTTGAGAATATGACCCCTGAAGCAGTTCGCAGCACCATTGAGGCTGGTTATCCACGGATTCTCTCCACTCGAGACAAGTATGGCCGTGTGGTGATACTGTTCAACATAGAGAACTGGGATTTGGAGGAGGTCACTTTTGATGAAACTCTGCGTGCATACTGTGTCATCCTGGAGAAACTTCTGGAAAACGAAGAGACTCAGATCAACGGTTTTGTCCTCATTGAAAACTTTAAGGGCTTCACCATGCAGCATGCCTCTGGCATCAAACACACCGAGCTGAAGAAGATGGTAGACATGCTGCAGGACTCTTTTCCTGCACGTTTTAAGGCGGTGCACGTGATCCATCAGCCCTGGTACTTCACAACCACGTATAATGTGGTTAAACCCTTCATGAAAAGCAAACTACTGGAGAGGGTTCATGTCCATGGTGATGAGTTGGAAACCTACTTAAGAGACTTTGGAGCTGAAATCCTTCCTCCAGACTTTGACGGAACGGGCCCAAACTGCGATGGCAAAGAGACGGCAATCAAGCTTTTTGGTTCTGAAGACACAGCTCTTTGAAAGGCTACACCAATGCACAACatcagcaatatatatatattttaaatatatgcaaaaaaaaacattaataggATTAATTtcctttagaaaaaataaagacataaaggTTGAAATGGAAACATTCTGAAATAAGAGCATGAGGGCGTACCCTGTGATTATACAGGACATTTTTGGAAGGAAAGAAAACGTAGAAAAAGTCAAGTGTTGCTGTAGATACCCAGTAGATGTTCTTACTGACTGCAACTGTGTAAGAAGTgctatactgtatgtaattggTTTAAATAGTTGGGCATagtgtatgttttttattatatttactttttaatcacaTTATTAGTTTGTCTCTTATACTGTACACCTGTTTTCGTGATGTAGAGTTGCTGACATtgtatttatcacaatatgttgaaaaatgaaaaaagtgttttttgtctGATAACCGGAAAACTGCTGCAGTTTGTTAacagtttaacactttatttaatatacattaataacttacatactgtacatttatgtagatgtattatattatataaagattATCTGATGTATAATTAAAAA

Function

symbol description
rlbp1a Predicted to enable phosphatidylinositol bisphosphate binding activity. Acts upstream of or within optokinetic behavior. Is expressed in brain; optic vesicle; and visual system. Human ortholog(s) of this gene implicated in Bothnia retinal dystrophy; Newfoundland cone-rod dystrophy; fundus albipunctatus; night blindness; and retinitis pigmentosa. Orthologous to human RLBP1 (retinaldehyde binding protein 1).
rlbp1 Predicted to enable phosphatidylinositol bisphosphate binding activity. Predicted to be involved in vitamin A metabolic process. Located in centrosome; cytosol; and nucleoplasm. Implicated in Bothnia retinal dystrophy; Newfoundland cone-rod dystrophy; fundus albipunctatus; night blindness; and retinitis pigmentosa.

NR:

description
PREDICTED: retinaldehyde-binding protein 1

GO:

id name namespace
GO:0007634 optokinetic behavior biological_process
GO:0006810 transport biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007252600.2 True 2121 mRNA 0.42 8 10733294 10743346

Neighbor

gene id symbol gene type direction distance location
LOC103033216 LOC108428499 coding upstream 2905 10718740 ~ 10730389 (+)
trnar-ucg_1 NA coding upstream 440885 10292337 ~ 10292409 (+)
psmd14 psmd14,psde,LOC107563735 coding upstream 443678 10281508 ~ 10289616 (+)
lgsn NA coding upstream 698051 10029657 ~ 10035243 (+)
mrpl4 mrpl4,LOC107680457,LOC107597183,LOC107680460,LOC107753863 coding upstream 753710 9973553 ~ 9979584 (+)
trnam-cau_21 NA coding downstream 11863 10755209 ~ 10755281 (+)
LOC103034920 NA coding downstream 13023 10756369 ~ 10861101 (+)
LOC103035556 gpc1,gpc1a,LOC108424978,LOC107653615,LOC107715080,LOC107588081 coding downstream 126276 10869622 ~ 10934882 (+)
atp5d atp5d coding downstream 407289 11150635 ~ 11157835 (+)
LOC103039314 midn,LOC108429554,LOC107655225,LOC106573601 coding downstream 433379 11176725 ~ 11201128 (+)
G41604 LOC108270701,LOC108428498,LOC107737005,LOC107685214 non-coding upstream 147345 10535765 ~ 10585949 (+)
G41597 NA non-coding upstream 241393 10462890 ~ 10491901 (+)
LOC107197699 NA non-coding upstream 404186 10303738 ~ 10329108 (+)
G41511 LOC108438683,LOC108270806 non-coding upstream 501346 10228851 ~ 10231948 (+)
G41507 NA non-coding upstream 506331 10218352 ~ 10226963 (+)
G41682 NA non-coding downstream 121367 10864713 ~ 10864960 (+)
G41684 NA non-coding downstream 123638 10866984 ~ 10867501 (+)
G41689 NA non-coding downstream 124786 10868132 ~ 10868418 (+)
G41686 tpm4a,LOC103036175,LOC107665514,LOC107561904 non-coding downstream 241862 10985208 ~ 11016077 (+)
G41731 NA non-coding downstream 291428 11034774 ~ 11035067 (+)
LOC103037553 LOC107753862,LOC107597184 other upstream 710330 9995709 ~ 10022964 (+)
LOC103022991 NA other upstream 1797808 8921928 ~ 8935486 (+)
LOC103027717 LOC108428455 other upstream 1970502 8718560 ~ 8762792 (+)
LOC103028988 tdo2b,tdo2,LOC108428450,LOC107551803,LOC107718213,LOC107685956,LOC107715811 other upstream 2208981 8512104 ~ 8524313 (+)
LOC107197696 NA other upstream 2906380 7826523 ~ 7826914 (+)
G41828 LOC108429549,LOC108271147 other downstream 827880 11571226 ~ 11580329 (+)
tmem161a tmem161a,LOC107728546,LOC107687722,LOC107554814,LOC107599454,LOC107719614 other downstream 926101 11669447 ~ 11709683 (+)
tmem221 tmem221 other downstream 1010541 11753887 ~ 11758708 (+)
LOC103047294 gpx4,gpx4a,LOC108429535 other downstream 1590998 12334344 ~ 12340913 (+)
G42068 NA other downstream 1889470 12632816 ~ 12633429 (+)

Expression


Co-expression Network