G47545


Basic Information

Item Value
gene id G47545
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 10784866 ~ 10785977 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU54074
AGGCAAAAATAAATTCATTTATTAAATATGTTGTTGTGCAATCCATTTCTGTTCATTTGCACTAAACAATTTAAATGCAAGTGATACAAGAAGATTTTGATTCTTAATCATCAGGCTTGAAAATGAAAAAAGAAAGTGGTGATGATGCTGTTAATAACATTCTCAGGATGTCGTTATGTAATAATGTTCTAGTCAAGAAAGTTATTGCATATCCTAATGGCATCTTCTAATAAAAATGCTGACAAACGGATGTGAAGTGGATCATCAAGTTTATCAAGCAAGGTTTACAACCTCCGGGTCAGGTTTGAGGGTCCAAATTTATAGTATGTTGCTTTAGAAATCATTAAATCACAAGATTCATTTTATATGTTGTAGTTAAGCACAGTAATTTCCCTTAAGGAGAATTTTGCCTTACTTTGATATAGCAGGTTGTATCCCAACAGTTTAAATACATGACAAAAAAGTGGTTCTGGGAATTTATAGGAGCACTTTATTATCATTTTTTAGGATGTCATTGTTGCACTATATAACTTTTTATGGTTTGAATGAAGTACTTAAGCTTTCCCACTAACCTGTTCCGTGCTTTATTTCATCATTTCCTATAATTGCCATTTAAAGACCGATGGTCATAAATGTAAGTGCATTCTTCTCTCTTTGTTACCATGTGTTAATGTACACATGAAGTTAAAAACCAATCAAAAATAATGAGGATGACCTCTCCTCTAGTTTCAGAGTAAACATTTTTTACCCATCCATATCAGAAACATACTAGGAGTTCTGTTCTTTCTCAGCCTTGGCACATCAGGAGTCCTAGAATATTGAGTCCTCCTACTGAGCTGCCATATTGCCCATGTAACCCACTCAATACCCTTCATCTGCCCAGGTCACCTCATAGTCTGGGTAATGGGTTTTTATCTTCTCTGTGGAAACAGAATGCTTTGCTCTCCCGAATCCATAGAATAACCGTAGACGTGGATCTTCTTTGCGTCTCTGTCATGTTTGATTCTTCCACCTCCGAGACACTCACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU54074 True 1028 lncRNA 0.40 2 10784866 10785977

Neighbor

gene id symbol gene type direction distance location
CI01000006_10676705_10699710 NA coding downstream 84984 10676367 ~ 10699882 (-)
CI01000006_10499329_10508831 NA coding downstream 275211 10499240 ~ 10509655 (-)
CI01000006_10453630_10483241 NA coding downstream 300860 10453613 ~ 10484006 (-)
CI01000006_10402704_10447782 NA coding downstream 335765 10402695 ~ 10449101 (-)
CI01000006_10372387_10387314 NA coding downstream 397264 10372129 ~ 10387602 (-)
CI01000006_11320839_11338355 STXBP1, STXBP1A coding upstream 534485 11320462 ~ 11338355 (-)
CI01000006_11388077_11391485 NA coding upstream 601517 11387494 ~ 11391485 (-)
CI01000006_11459706_11462546 NA coding upstream 673311 11459288 ~ 11462605 (-)
CI01000006_11530728_11535297 NA coding upstream 744389 11530366 ~ 11535900 (-)
CI01000006_11596063_11609407 NA coding upstream 809662 11595639 ~ 11609407 (-)
G47568 NA non-coding downstream 7192 10776818 ~ 10777674 (-)
G47558 NA non-coding downstream 27324 10753158 ~ 10757542 (-)
G47544 NA non-coding downstream 52635 10731445 ~ 10732231 (-)
G47520 NA non-coding downstream 77322 10661015 ~ 10707544 (-)
G47444 NA non-coding downstream 264515 10518183 ~ 10520351 (-)
G47580 NA non-coding upstream 42923 10828900 ~ 10830837 (-)
G47583 NA non-coding upstream 51082 10837059 ~ 10873768 (-)
G47584 NA non-coding upstream 76092 10862069 ~ 10913239 (-)
G47601 NA non-coding upstream 118875 10904852 ~ 10905287 (-)
G47618 NA non-coding upstream 127834 10913811 ~ 10914098 (-)
CI01000006_07500281_07507754 NA other downstream 3273910 7500246 ~ 7507976 (-)
CI01000006_06974359_06976736 NA other downstream 3807994 6973224 ~ 6976872 (-)
CI01000006_04560607_04560993 NA other downstream 6222798 4559509 ~ 4562068 (-)
G43549 NA other downstream 6429438 4352510 ~ 4355428 (-)
G47658 NA other upstream 244934 11030911 ~ 11033127 (-)
CI01000006_11651067_11653761 SMD3, SNRPD3, SNRPD3L, MGC52856 other upstream 864386 11650363 ~ 11654424 (-)
CI01000006_12348300_12348961 GLRX other upstream 1548432 12347180 ~ 12349383 (-)
CI01000006_12569291_12581457 CELL, CEL.2, CEL.1 other upstream 1564782 12569205 ~ 12582487 (-)

Expression


Co-expression Network