LOC103035556 (gpc1,gpc1a,LOC108424978,LOC107653615,LOC107715080,LOC107588081)


Basic Information

Item Value
gene id LOC103035556
gene name gpc1,gpc1a,LOC108424978,LOC107653615,LOC107715080,LOC107588081
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 10869622 ~ 10934882 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007252605.3
AGACTGAGTGACGGGCGGCTgaagcagcggcagcagcagcacactgcGGGGGAGGAGCGCGGCTGAGCCCCGCTGCACTGTGTATGTTTTAGCTATCACTCCGGCTTCTCCTCCAGCGCAGTTACAGCCGACGCTCCACCGCCAGCTCTGACACGACATGAGCAGCAGCAGGCACGGGAACCCTCCGGACTAAAGACccgagagagaaacagagagagagagagtcgccGACCGAGGCTGGCTGAACCCCCGCGGGCTGCCGGGCTGATACACGCCGAGCGCGGCCGGGCGTGAGGCGGCTTAGACGCGCCGCTCTCTCTAACCTGCCTGGGTCCATCCGGGCGGAGCTTCTCCACACTTTTCTCCCAGCGTGCATGGTGGATTTATAGAGACACCGGGTGCCTTAATACCTGTCTTCTTTGGTGGGACTTGTTTAAATCACCGGTCCGCGTCTTTAAGGATGGACTTCACCCCGGTCTCCGTGGCTCTGTGCCTGCTGGCCGTGTGCGTGTGCGCGGCGGATAAAGCCAAGAGCTGCACCGAGGTCCGTCACTTCTACAGCGGGAAGGGCTTCACCCTGAACGGGGTACCCAACTCGGAGATATCCGGTGAGCATCTGCGCGTCTGCCCTCAAGGATACACCTGCTGCACCAGCGCCATGGAGGAGACCCTGTCCAACCTGAGCCGGAGGGAGTTTGAAGGACTGGTCAGAGAGGCTGGACGCTCCATCCAAGCTACGCTCAACGCCCAATACAGGAGCTTTGATACATACTTCATAGAACTTCTGAATGGATCCGAGCGCTGGCTGGAGGAAGCATTCGTTAAAGCCCTGGGGGCTCTGTATGGGCCCAATGCGGTGGTCTTCCGTGATCTGTACTCGGAACTGCGGCGCTACTACAGGGGCGCGGCGCTGAACCTGGAGGAGGCTCTGGATGAGTTCTGGGCTCGTCTGCTGGAGCGAATGCTGAAGGCCTCTGACCCGGCCGCTGCTTCGCTCATCTCTGACGACTTCCTGGAGTGTGCGTCCAAGCAGGCCGAGACTCTGCGTCTGTTCGGTGAAGCCCCTCGCGAGTTGAAGACCCGGCTGGTGCGCGTGTTCGTCGCCGCCCGTGCTTTCGTGCAGGGCTTAAACATGGCCGGAGATGTCGTGAGGAAGGTTTCTCAGGTTCCTCTGACTCCTGAATGTAACCGTGCCATTATGAAGCTGGTGTACTGCCCGCACTGCCGGGGCCTGGGCTCCGTCAAGCCCTGCGCCAATTACTGCAAAAACGTCATGAAGGGCTGCCTGGCTAACCAGGCCGACCTGGACACGGAGTGGCAAAACCTCATAGACACTATGCTGCAGGTGGCCTCGAGCTTCGGGACAGAACCAAGCATGGACGTAATTCTCCACTCCATCCCTGTGCGCATCTCAGAGGCTGTGCAGCACATGCAGGAGAACATGGAGCTCTACACCAACAAGctTTTCCAGGCGTGTGGGGAGCGGGGAGAAGAAGGAACACCGACCTCAGTGTCTGAGGAGCCTAAAAAGAAGGAGAGCACAGTGACGACGCTGGAGTACAAACccagctctgctgctgcagtCAGACTAGAGGTGCAGGTCTCTGATGTGTCGAGTAAGCTAAAGGAGATGCAGATGTTCTGGATCCAGCTGGCCTCTGCTCTCTGCAACAGTAAAGCGGCGTCCGGCTCCTCCAACAACGACAAGTGCTGGAACGGCATGGCCAAAGCCAGGTACCTGCCTGAGATCATGGGAGATGGACTGGCCAATCAGATCAATAATCCAGAGGTGGACATCGACATCACCAAGCCAGACATGACAATACGACAGCAGATCATGCAGCTGAAAATCATGTCCAATCGTCTGAAAAACGCTCTGGATGGAAACGATGTGGATTTCCAGGACACAAGTGATGACATCAGCGGCTCAGGCAGTGGAATGTGCAGCGAGCAGGTCTGTGTCCGGGGGCCGCCTGTGTTCGGACCCAAACTGGACCGACCCAAACTGGACGTCTACAACCCAGCAAAGAACAAAGCGAAAGGCTCTGGATATCAGATTCAGCCCTGCATCTCCTTAATTCTGCTGCTGCTCGTCAGCCTCCTGCTCAGACGGTAATGGAAACACACTGTCCTGCCAGAACTGGACGGGGGGATTTAGGGTGGGAGTTGGTGGGAAGGGTGGggtctgaagaaaaacagcgGTGAGCCAACAAAATTGCCAAAAGAAAAGTCAGCGAATGAATGGACCTTTCATCTCcgagagacagagggagtgaTGAAATCTTCttttataaatcttttttttttattgtatattaagTTTTTCTTCAAAtctttgaatgttaaaaaaaagtaacaaccTTTGGTGGTTTTTGTAAATGTACACTTTTCTCAAGCCTGTACGCAATCTACCCGAGCTGTCACTTAGTTACCCTGTGTTTCATTTCACACAATACTCGCGCCAGAGCAGTTCATACTTACACAACTGtccttttgatttttttgagcacttcacaaataaaaaaaagcataataataGACGAGCTTTTAAGGAGAGATCAGAACACTGCTCCAGAATTCCAGATAATCCCAGGTGATATAAAACAATTAGGTTAAGTAAAATTGGGTATTCCCTGATTAAACACAGGATCTACTTGCATAACATGGTCATTTTTTGTTAGGCcactattcattattattattattattattattattaataataattttctataAATGTGTGATATACTAAGATGGAcgtgtaaaaaaacagaatgtttgTAAAGAACTTCCTTCAGCAGCACAAAAATCAGTGATGGGTTTGGCTTCTTTAAAAGGACTGTATGTGTGGGTAAGAAAGATGTGCATGTTTTTGAcatgaaaaagcaaaaaaataggtcttaaatgtaaagaaaatattttaacttaaactaaatgaaaatgaa

Function

symbol description
gpc1a Predicted to enable fibroblast growth factor binding activity. Acts upstream of or within intrahepatic bile duct development. Predicted to be located in collagen-containing extracellular matrix; extracellular space; and plasma membrane. Predicted to be anchored component of plasma membrane and integral component of membrane. Predicted to be active in cell surface and synapse. Is expressed in digestive system and nervous system. Orthologous to human GPC1 (glypican 1).
gpc1 Enables copper ion binding activity. Involved in heparan sulfate proteoglycan catabolic process. Located in cytosol; nucleoplasm; and plasma membrane. Colocalizes with membrane raft.

NR:

description
PREDICTED: glypican-1-like isoform X1

GO:

id name namespace
GO:0035622 intrahepatic bile duct development biological_process
GO:0061009 common bile duct development biological_process
GO:0031225 anchored component of membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005615 extracellular space cellular_component
GO:0043395 heparan sulfate proteoglycan binding molecular_function

KEGG:

id description
K08107 GPC1; glypican 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007252605.3 True 2945 mRNA 0.51 9 10869622 10934882

Neighbor

gene id symbol gene type direction distance location
LOC103034920 NA coding upstream 8521 10756369 ~ 10861101 (+)
trnam-cau_21 NA coding upstream 114341 10755209 ~ 10755281 (+)
LOC103033538 rlbp1,rlbp1a,LOC107737004,LOC107685234,LOC107600717,LOC107594728 coding upstream 126276 10733294 ~ 10743346 (+)
LOC103033216 LOC108428499 coding upstream 139233 10718740 ~ 10730389 (+)
trnar-ucg_1 NA coding upstream 577213 10292337 ~ 10292409 (+)
atp5d atp5d coding downstream 215753 11150635 ~ 11157835 (+)
LOC103039314 midn,LOC108429554,LOC107655225,LOC106573601 coding downstream 241843 11176725 ~ 11201128 (+)
LOC103039618 cirbp,LOC107719610,LOC107655227,LOC107599461 coding downstream 431383 11366265 ~ 11373344 (+)
rfxank rfxank,LOC107554808,LOC107687741,LOC107599486,LOC107719616 coding downstream 827740 11762622 ~ 11767697 (+)
LOC103025613 ncan,LOC107097932,LOC103150419,LOC107554802 coding downstream 879615 11814497 ~ 12077978 (+)
G41689 NA non-coding upstream 1204 10868132 ~ 10868418 (+)
G41684 NA non-coding upstream 2121 10866984 ~ 10867501 (+)
G41682 NA non-coding upstream 4662 10864713 ~ 10864960 (+)
G41604 LOC108270701,LOC108428498,LOC107737005,LOC107685214 non-coding upstream 283673 10535765 ~ 10585949 (+)
G41597 NA non-coding upstream 377721 10462890 ~ 10491901 (+)
G41686 tpm4a,LOC103036175,LOC107665514,LOC107561904 non-coding downstream 50326 10985208 ~ 11016077 (+)
G41731 NA non-coding downstream 99892 11034774 ~ 11035067 (+)
G41732 NA non-coding downstream 107778 11042660 ~ 11043014 (+)
G41802 NA non-coding downstream 348355 11283237 ~ 11341114 (+)
G41839 NA non-coding downstream 782253 11717135 ~ 11718476 (+)
LOC103037553 LOC107753862,LOC107597184 other upstream 846658 9995709 ~ 10022964 (+)
LOC103022991 NA other upstream 1934136 8921928 ~ 8935486 (+)
LOC103027717 LOC108428455 other upstream 2106830 8718560 ~ 8762792 (+)
LOC103028988 tdo2b,tdo2,LOC108428450,LOC107551803,LOC107718213,LOC107685956,LOC107715811 other upstream 2345309 8512104 ~ 8524313 (+)
LOC107197696 NA other upstream 3042708 7826523 ~ 7826914 (+)
G41828 LOC108429549,LOC108271147 other downstream 636344 11571226 ~ 11580329 (+)
tmem161a tmem161a,LOC107728546,LOC107687722,LOC107554814,LOC107599454,LOC107719614 other downstream 734565 11669447 ~ 11709683 (+)
tmem221 tmem221 other downstream 819005 11753887 ~ 11758708 (+)
LOC103047294 gpx4,gpx4a,LOC108429535 other downstream 1399462 12334344 ~ 12340913 (+)
G42068 NA other downstream 1697934 12632816 ~ 12633429 (+)

Expression


Co-expression Network