atp5d (atp5d)


Basic Information

Item Value
gene id atp5d
gene name atp5d
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 11150635 ~ 11157835 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007252618.2
ccatgatGCTAAAGCAGCGTAGCTCGCAGGGGCTTATGGGGAGCTCCGCTGTGCCCTTTCTATCCGCCGCGCTGTGAATGAGAGGTTGGGTTTGGGGGATCACTGCTCTGTGTTTCAGTTCTCTGTAAAACGTCCATTTCTCCACAGACTCCAACAAAATGATGGCAGCTCGGTTCCTCCTCCGCCGCGCGGCTCCAGCGCTGAGGCAGGTGCGCTGCTACGCCGAGGCGGCCTCCGGTGCTCCCCAGATGTCCTTCACTTTCGCCTCGCCGAACGAGGTGTTCTTTAAAGGAGTCAGTGTTAAACAGGTGGATGTCCCCACACTGACTGGTGCTTTCGGTATCCTTCCAGCCCACGTCCCCACACTACAAGTGCTAAGGCCCGGTGTTGTCACCGTTTTCAGTGATGACGGAACTTCAGCAAAGTATTTTGtgAGCAGCGGTTCAATTACCGTCAACGCCGACTCTTCAGTGCAGCTGCTCGCTGAGGAGGCTGTTCCTTTGGAAAATCTGGACCTGGCTACGGCTAAAGCTAACCTGGAGAAAGCCCAGTCAGAGATGGGCAGTGCTTCAGATGAGGCGTCCCGGGCGGAGGTCCAGATCAGCATAGAAGCCAACGAGGCAATCGTCAAGGCTCTGGAATAAAGCTGTCGCTTCTTTAGTGatTTCATTTGGCACATCTGTTTGTCTCCAGGTCTGAAGCTgttttgtggggaaaaaagtcTCCATTACTCAGTCCCCATCAGTGAAGTCAGTAACCGAAGTCATATGGATTGCTTTGTACAGTTGATGATTATACCAAtaaatttatttggaattaa
>XM_007252619.3
GGCTTATGGGGAGCTCCGCTGTGCCCTTTCTATCCGCCGCGCTGTGAATGAGAGGTTGGGTTTGGGGGATCACTGCTCTGTGTTTCAGTTCTCTGTAAAACGTCCATTTCTCCACAGACTCCAACAAAATGATGGCAGCTCGGTTCCTCCTCCGCCGCGCGGCTCCAGCGCTGAGGCAGGTGCGCTGCTACGCCGAGGCGGCCTCCGGTGCTCCCCAGATGTCCTTCACTTTCGCCTCGCCGAACGAGGTGTTCTTTAAAGGAGTCAGTGTTAAACAGGTGGATGTCCCCACACTGACTGGTGCTTTCGGTATCCTTCCAGCCCACGTCCCCACACTACAAGTGCTAAGGCCCGGTGTTGTCACCGTTTTCAGTGATGACGGAACTTCAGCAAAGTATTTTGtgAGCAGCGGTTCAATTACCGTCAACGCCGACTCTTCAGTGCAGCTGCTCGCTGAGGAGGCTGTTCCTTTGGAAAATCTGGACCTGGCTACGGCTAAAGCTAACCTGGAGAAAGCCCAGTCAGAGATGGGCAGTGCTTCAGATGAGGCGTCCCGGGCGGAGGTCCAGATCAGCATAGAAGCCAACGAGGCAATCGTCAAGGCTCTGGAATAAAGCTGTCGCTTCTTTAGTGGTCTGAAGCTgttttgtggggaaaaaagtcTCCATTACTCAGTCCCCATCAGTGAAGTCAGTAACCGAAGTCATATGGATTGCTTTGTACAGTTGATGATTATACCAAtaaatttatttggaattaa

Function

symbol description
atp5d Predicted to enable proton transmembrane transporter activity. Predicted to contribute to proton-transporting ATP synthase activity, rotational mechanism. Predicted to be involved in mitochondrial ATP synthesis coupled proton transport and mitochondrial proton-transporting ATP synthase complex assembly. Predicted to act upstream of or within proton transmembrane transport. Located in mitochondrial inner membrane. Is expressed in several structures, including alimentary system; eye; genitourinary system; integumental system; and nervous system. Human ortholog(s) of this gene implicated in mitochondrial complex V (ATP synthase) deficiency. Orthologous to human ATP5F1D (ATP synthase F1 subunit delta).

NR:

description
ATP synthase subunit delta, mitochondrial

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) cellular_component
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0046961 proton-transporting ATPase activity, rotational mechanism molecular_function

KEGG:

id description
K02134 ATPeF1D, ATP5D, ATP16; F-type H+-transporting ATPase subunit delta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007252618.2 True 820 mRNA 0.52 5 11150635 11157835
XM_007252619.3 False 760 mRNA 0.52 5 11150665 11157835

Neighbor

gene id symbol gene type direction distance location
LOC103035556 gpc1,gpc1a,LOC108424978,LOC107653615,LOC107715080,LOC107588081 coding upstream 215753 10869622 ~ 10934882 (+)
LOC103034920 NA coding upstream 289534 10756369 ~ 10861101 (+)
trnam-cau_21 NA coding upstream 395354 10755209 ~ 10755281 (+)
LOC103033538 rlbp1,rlbp1a,LOC107737004,LOC107685234,LOC107600717,LOC107594728 coding upstream 407289 10733294 ~ 10743346 (+)
LOC103033216 LOC108428499 coding upstream 420246 10718740 ~ 10730389 (+)
LOC103039314 midn,LOC108429554,LOC107655225,LOC106573601 coding downstream 18890 11176725 ~ 11201128 (+)
LOC103039618 cirbp,LOC107719610,LOC107655227,LOC107599461 coding downstream 208430 11366265 ~ 11373344 (+)
rfxank rfxank,LOC107554808,LOC107687741,LOC107599486,LOC107719616 coding downstream 604787 11762622 ~ 11767697 (+)
LOC103025613 ncan,LOC107097932,LOC103150419,LOC107554802 coding downstream 656662 11814497 ~ 12077978 (+)
trnaa-agc_12 NA coding downstream 955297 12113132 ~ 12113204 (+)
G41732 NA non-coding upstream 107621 11042660 ~ 11043014 (+)
G41731 NA non-coding upstream 115568 11034774 ~ 11035067 (+)
G41686 tpm4a,LOC103036175,LOC107665514,LOC107561904 non-coding upstream 134558 10985208 ~ 11016077 (+)
G41689 NA non-coding upstream 282217 10868132 ~ 10868418 (+)
G41684 NA non-coding upstream 283134 10866984 ~ 10867501 (+)
G41802 NA non-coding downstream 125402 11283237 ~ 11341114 (+)
G41839 NA non-coding downstream 559300 11717135 ~ 11718476 (+)
G41841 NA non-coding downstream 562286 11720121 ~ 11720995 (+)
G41842 NA non-coding downstream 563497 11721332 ~ 11721804 (+)
G41906 NA non-coding downstream 960597 12118432 ~ 12121430 (+)
LOC103037553 LOC107753862,LOC107597184 other upstream 1127671 9995709 ~ 10022964 (+)
LOC103022991 NA other upstream 2215149 8921928 ~ 8935486 (+)
LOC103027717 LOC108428455 other upstream 2387843 8718560 ~ 8762792 (+)
LOC103028988 tdo2b,tdo2,LOC108428450,LOC107551803,LOC107718213,LOC107685956,LOC107715811 other upstream 2626322 8512104 ~ 8524313 (+)
LOC107197696 NA other upstream 3323721 7826523 ~ 7826914 (+)
G41828 LOC108429549,LOC108271147 other downstream 413391 11571226 ~ 11580329 (+)
tmem161a tmem161a,LOC107728546,LOC107687722,LOC107554814,LOC107599454,LOC107719614 other downstream 511612 11669447 ~ 11709683 (+)
tmem221 tmem221 other downstream 596052 11753887 ~ 11758708 (+)
LOC103047294 gpx4,gpx4a,LOC108429535 other downstream 1176509 12334344 ~ 12340913 (+)
G42068 NA other downstream 1474981 12632816 ~ 12633429 (+)

Expression


Co-expression Network