LOC103039618 (cirbp,LOC107719610,LOC107655227,LOC107599461)


Basic Information

Item Value
gene id LOC103039618
gene name cirbp,LOC107719610,LOC107655227,LOC107599461
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 11366265 ~ 11373344 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007252621.3
ACAAGCTCTTATACCGACTCCATTTTACAGACGGTCTCATTCTCCCACTCCCAGCAGCTCCGCCTGTTCACACCGAGTCGAGGACcggaaaaaagaaacacacgCAAGATGTCTGACGAAGGAAAGCTTTTCATTGGTGGACTCAGCTATGACACCACTGAGCAGTCCCTAGAGGATGCTTTCTCTAAGTATGGAACCATTGCCAAAGtTGATGTAATCAGAGATCGTGAGACAGACCGGTCCAGGGGCTTTGGCTTTGTCACATTTGAAAATCCCGATGATGCCAAGGATGCGATGGTTGCTATGAATGGAAAGTCTATTGATGGCCGAATGATTCGTGTGGATGAAGCTGGTAAATCTGGTGGCCGATCTGGTGGGTTCAGAGGTTCTGGTGGCGGCGGCAGAGGATTTTTCAGAGGTGGCAGAGGAAGAGGTGGTGGAGGATATGGAGGAGACAGGGGCTATGGGGGTGGTGACCGTGGGTATGGAGGTGGTGATAGAAGCTACGGCGGAGACCGTAGTTATGGTGGAGGAGACCGGAGCTACAGCAGTGGTGACAGGAGCTATGGTAGCGGTGGAGGTGGTAGCAGCTACTTCAACAGGAGTGGTGGTGGCTACTCCGGTGGTGGCGGTGGATACAGAGACAACAGGAACCAGGGTGGTTATGAGCGTTCAGGAGGCTCCTACAGAGACAGCTATGACAGTTATGCTACGCACgagtaaaaaaaatcctgattcCAAGATCATCCCTTCGCTGGCTGTATTTAAAAGATGTGCTCTTCGAAGAATCTTTTGATTTTCACATTAAGTGTCTACTATTCTCTTAAAACACATTGATAGCATTTTGcagtcctttttttaatttttatttttgtgttcaaTCCTGCCTTCTCTTTTGAGAGGAGGacttctttatatttaattactgtaaaCATTAAAAGCCAATTTAAAGTATATGTACTGACAGTTGTCCCATAAGGAGGATAAtgggttttatttcatttttttgtaattgtaatgaAGCCTCACTGTTTTGAACCATGTTTGAAATCTCTGACCAGTTCAGCACAGCCTGATAGCTTCTAAAGCCAATTGATGCAAAACTTTGGACCAACCTAGAGTGCATGTAGCTTTGAAAAAGACCGGTGTCCTCAAAGCAGGTTCTTGCCTGGAATTCTCTGCCTCTAAAATTCAACCATAATCCCATTCCCAAAAGAAGCTTGACAAGCTGTGATGTGCTCTTTGGGTGGCTTTCATCCTTGGTGTTGCTGAAGTCCTGTAAACGTTCAGTGTCCAAAGAGTGAACTACTTTAATGGGTGATTGCTCACTTGGTGCACGAAATTGATCTGCTAGTGGTGACCCGAGGTACTTTACTCTTTGACGTTTGAATGAAGTAATACTTTTTGATCGTAACTTAAAATTTACACGTAAAACTCAGTCTCTTAATGTCAAGATTTTGTTCCTTCTGGGAAATGTGCTCTGTTCTGTGTACCAACACCTGctatttttttgttcctttttgtaaaaaaatttgGCTTCATGAAGCCCATTAAACAAGTTCCTGAAAATG
>XM_007252622.3
CACAAGCTCTTATACCGACTCCATTTTACAGACGGTCTCATTCTCCCACTCCCAGCAGCTCCGCCTGTTCACACCGAGTCGAGGACcggaaaaaagaaacacacgCAAGATGTCTGACGAAGGAAAGCTTTTCATTGGTGGACTCAGCTATGACACCACTGAGCAGTCCCTAGAGGATGCTTTCTCTAAGTATGGAACCATTGCCAAAGtTGATGTAATCAGAGATCGTGAGACAGACCGGTCCAGGGGCTTTGGCTTTGTCACATTTGAAAATCCCGATGATGCCAAGGATGCGATGGTTGCTATGAATGGAAAGTCTATTGATGGCCGAATGATTCGTGTGGATGAAGCTGGTAAATCTGGTGGCCGATCTGGTGGGTTCAGAGGTTCTGGTGGCGGCGGCAGAGGATTTTTCAGAGGTGGCAGAGGAAGAGGTGGTGGAGGATATGGAGGAGACAGGGGCTATGGGGGTGGTGACCGTGGGTATGGAGGTGGTGATAGAAGCTACGGCGGAGACCGTAGTTATGGTGGAGGAGACCGGAGCTACAGCAGTGGTGACAGGAGCTATGGTAGCGGTGGAGGTGGTAGCAGCTACTTCAACAGGAGTGGTGGTGGCTACTCCGGTGGTGGCGGTGGATACAGAGACAACAGGAACCAGGGTGGTTATGAGCGTTCAGGAGGCTCCTACAGAGACAGCTATGACAGTTATGGTTGAAAGCTGCTTGATGTGGAAGCTGAGATGAGCCAGTGTCTACGTGGTTACTGTTTGTGACTTGATGGATGACATCCCTTAAATCTTAAAGAGGGTTATGCTGAATTCCCTGCAGAGCTGAACAGCGGTGTCGTGGTGAGGGAATTGAGAAGAGGCAATCATGACTGATATGCTTGACCTCTTTAACTGTAGCTGTGGTTTGAccacaatgttttaaaatgcttCTCAAATAAAGTTATCTAATAAACAAGTTAACAATG
>XM_022669595.1
GGTCTCATTCTCCCACTCCCAGCAGCTCCGCCTGTTCACACCGAGTCGAGGACcggaaaaaagaaacacacgCAAGATGTCTGACGAAGGAAAGCTTTTCATTGGTGGACTCAGCTATGACACCACTGAGCAGTCCCTAGAGGATGCTTTCTCTAAGTATGGAACCATTGCCAAAGtTGATGTAATCAGAGATCGTGAGACAGACCGGTCCAGGGGCTTTGGCTTTGTCACATTTGAAAATCCCGATGATGCCAAGGATGCGATGGTTGCTATGAATGGAAAGTCTATTGATGGCCGAATGATTCGTGTGGATGAAGCTGGTAAATCTGGTGGCCGATCTGGTGGGTTCAGAGGTTCTGGTGGCGGCGGCAGAGGATTTTTCAGAGGTGGCAGAGGAAGAGGTGGTGGAGGATATGGAGGAGACAGGGGCTATGGGGGTGGTGACCGTGGGTATGGAGGTGGTGATAGAAGCTACGGCGGAGACCGTAGTTATGGTGGAGGAGACCGGAGCTACAGCAGTGGTGACAGGAGCTATGGTAGCGGTGGAGGTGGTAGCAGCTACTTCAACAGGAGTGGTGGTGGCTACTCCGGTGGTGGCGGTGGATACAGAGACAACAGGAACCAGGGTGGTTATGAGCGTTCAGGAGGCTCCTACAGAGACAGCTATGACAGTTATGCTACGCACgagtaaaaaaaatcctgattcCAAGATCATCCCTTCGCTGGCTGTATTTAAAAGATGTGCTCTTCGAAGAATCTTTTGATTTTCACATTAAGTGTCTACTATTCTCTTAAAACACATTGATAGCATTTTGcagtcctttttttaatttttatttttgtgttcaaTCCTGCCTTCTCTTTTGAGAGGAGGacttctttatatttaattactgtaaaCATTAAAAGCCAATTTAAAGTATATGTACTGACAGTTGTCCCATAAGGAGGATAAtgggttttatttcatttttttgtaattgtaatgaAGCCTCACTGTTTTGAACCATGTTTGAAATCTCTGACCAGTTCAGCACAGCCTGATAGCTTCTAAAGCCAATTGATGCAAAACTTTGGACCAACCTAGAGTGCATGTAGCTTTGAAAAAGACCGGTGTCCTCAAAGCAGGTTCTTGCCTGGAATTCTCTGCCTCTAAAATTCAACCATAATCCCATTCCCAAAAGAAGCTTGACAAGCTGTGATGTGCTCTTTGGGTGGCTTTCATCCTTGGTGTTGCTGAAGTCCTGTAAACGTTCAGTGTCCAAAGAGTGAACTACTTTAATGGGTGATTGCTCACTTGGTGCACGAAATTGATCTGCTAGTGGTGACCCGAGGTACTTTACTCTTTGACGTTTGAATGAAGTAATACTTTTTGATCGTAACTTAAAATTTACACGTAAAACTCAGTCTCTTAATGTCAAGATTTTGTTCCTTCTGGGAAATGTGCTCTGTTCTGTGTACCAACACCTGctatttttttgttcctttttgtaaaaaaatttgGCTTCATGAAGCCCATTAAACAAGTTCCTGAAAATG

Function

symbol description
cirbp Enables mRNA 3'-UTR binding activity and small ribosomal subunit rRNA binding activity. Involved in mRNA stabilization; positive regulation of translation; and response to UV. Located in cytoplasm and nucleoplasm.

NR:

description
PREDICTED: cold-inducible RNA-binding protein isoform X2

GO:

id name namespace
GO:0009409 response to cold biological_process
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K13195 CIRBP; cold-inducible RNA-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007252621.3 True 1571 mRNA 0.44 7 11368037 11371720
XM_007252622.3 False 972 mRNA 0.49 8 11368036 11373344
XM_022669595.1 False 1539 mRNA 0.44 7 11366265 11371720

Neighbor

gene id symbol gene type direction distance location
LOC103039314 midn,LOC108429554,LOC107655225,LOC106573601 coding upstream 165137 11176725 ~ 11201128 (+)
atp5d atp5d coding upstream 208430 11150635 ~ 11157835 (+)
LOC103035556 gpc1,gpc1a,LOC108424978,LOC107653615,LOC107715080,LOC107588081 coding upstream 431383 10869622 ~ 10934882 (+)
LOC103034920 NA coding upstream 505164 10756369 ~ 10861101 (+)
trnam-cau_21 NA coding upstream 610984 10755209 ~ 10755281 (+)
rfxank rfxank,LOC107554808,LOC107687741,LOC107599486,LOC107719616 coding downstream 389278 11762622 ~ 11767697 (+)
LOC103025613 ncan,LOC107097932,LOC103150419,LOC107554802 coding downstream 441153 11814497 ~ 12077978 (+)
trnaa-agc_12 NA coding downstream 739788 12113132 ~ 12113204 (+)
LOC103045466 LOC108429539,LOC108271013,LOC106573581,LOC107599449 coding downstream 771868 12145212 ~ 12240406 (+)
LOC103046586 LOC108429538 coding downstream 875293 12248637 ~ 12285219 (+)
G41802 NA non-coding upstream 25151 11283237 ~ 11341114 (+)
G41732 NA non-coding upstream 323251 11042660 ~ 11043014 (+)
G41731 NA non-coding upstream 331198 11034774 ~ 11035067 (+)
G41686 tpm4a,LOC103036175,LOC107665514,LOC107561904 non-coding upstream 350188 10985208 ~ 11016077 (+)
G41689 NA non-coding upstream 497847 10868132 ~ 10868418 (+)
G41839 NA non-coding downstream 343791 11717135 ~ 11718476 (+)
G41841 NA non-coding downstream 346777 11720121 ~ 11720995 (+)
G41842 NA non-coding downstream 347988 11721332 ~ 11721804 (+)
G41906 NA non-coding downstream 745088 12118432 ~ 12121430 (+)
G41954 NA non-coding downstream 912209 12285553 ~ 12285980 (+)
LOC103037553 LOC107753862,LOC107597184 other upstream 1343301 9995709 ~ 10022964 (+)
LOC103022991 NA other upstream 2430779 8921928 ~ 8935486 (+)
LOC103027717 LOC108428455 other upstream 2603473 8718560 ~ 8762792 (+)
LOC103028988 tdo2b,tdo2,LOC108428450,LOC107551803,LOC107718213,LOC107685956,LOC107715811 other upstream 2841952 8512104 ~ 8524313 (+)
LOC107197696 NA other upstream 3539351 7826523 ~ 7826914 (+)
G41828 LOC108429549,LOC108271147 other downstream 197882 11571226 ~ 11580329 (+)
tmem161a tmem161a,LOC107728546,LOC107687722,LOC107554814,LOC107599454,LOC107719614 other downstream 296103 11669447 ~ 11709683 (+)
tmem221 tmem221 other downstream 380543 11753887 ~ 11758708 (+)
LOC103047294 gpx4,gpx4a,LOC108429535 other downstream 961000 12334344 ~ 12340913 (+)
G42068 NA other downstream 1259472 12632816 ~ 12633429 (+)

Expression


Co-expression Network