LOC103046586 (LOC108429538)


Basic Information

Item Value
gene id LOC103046586
gene name LOC108429538
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 12248637 ~ 12285219 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007252645.3
GGACTTGTTCTCTGATAGGGTTTGTGTTGTTTCCTGTGGGTTTCCTGTGGAAAGAATCCAGCTAATCTTTGCTTTTGCTGGTGGGAAAAATGTGGTTTCCCAGAGAGAGCCGTGGTGGTCGGCGGTGGAGGTGACCGTTAGCTGCCTGAGGGCGCAGTCGCAGAGGTCACAGGTGTTTCTCTAGGAGTGTAgcgtggagagagagagagagataatggagGTGAGGTTCAGAGATCTGAAAGCAGACATGGAGGAAATGACGATATGGGAGCAGCACACTGTGACTCTAAACAAAGACCCTAAAGTGGGCTTCGGCTTTGCTGTCTCGGGTGGGAGAGACAAGCCAAATCCAGCCAATGGAGACACGGCGGTGATCGTCTCTGACGTGCTTCCCAGTGGGCCGGCTATGGGCCGACTCCAgacaAGAGATCAGATAGTGATGGTGAACGGAGTGTCTGTGGAGAACTCCACCTCCCTCTACACCATTCAGCACCTCAAGAGCTGTGGCAAAACAGCCAATATAACCATAAAGAGGCCACGAAAGATTCAGGTCCCGTCCAGCAACAGGCCCACTCGCGCTTCCTCTCAGTCCAACCTGCTGGATAATGACCGATATGAGCAGAGACCTCGCCGAGGGTCAGACGGGTACACCCGCCGCCCCCGCAGCGCCACACCAGAGCGCAACGGCCACGACCTGCCCCTCATGTCCGGCTTTAAAAGACTGCCCAATCAGGACGTGCAAGACAAGCCCATCAAAACCACACTGATCAAGAAGAAGCCCACAGATGAGTACGGGATGAAGCTGGGGAGTCAGATTTTCATTAAACACATGACCGCCACCGGTCTGGCTGCAAAAGAAGGCACACTGCAGGAGGGTGATCTTGTGCTGAAGATTAATGGAATGACCACAGAGAACCTCTCACTGCTTGAGACCAAGCACTTGGTAGAGAAGTCCAGAGGTAAACTGACCATGGTGGTCTTGAGGGACAACAGGAAGTTTCTGGTCAGTATTCCTGAGGTGGAGGACAGTCCTGAGAACAGTGCAGATGAGAGATACAAGGAGAGCAGCTCTGAACTGGAAGATATTTCGGATCTGGATACAGATGAGCGAGCGAACAGATCTCGTCCAGTTGCACGAGAGCGACGCACACGCAgAAACAGAACTGAAGCTGCTGCTCCTTCCAAAGCACGTGACTCGTCCCCTCTGCACTCCACCCTGACACGGCCAGTCGCCCAGTCCAAACCCACGCGCAGGGTTTCGTCAGAATCAGAATCCGACCGCAGCAACTCTCCTCCACCTAAACACGACAGCCTCGATAACCGAGACCGATACAGAGTGCTCTCAGGTGTCTCCACGCTGCCGAACCCTCGAGCTTCTCCCGTGCCTTATAACTTGAACGCTCCTCACAACACATCCTCAGCCTCACGGCCACGCAGAGctgtttctgagtctgatTCAGACAGGAGTGCCTCTCCACCACCCAGACGAGAGAGTCCCAAACAAGACCCTCACTCCAGATACAAGGTTCTTCCTGACCTTCCTCCACCTGGCTTGAAGACATCTACCATGAGCCGCTCCCAGGAGCTCCTCAACCGTGGGGCGTCCCCATACAGACCCCCACCACGAGATTCTGAGTCCGATTCAGACCAAAGCTCTGGACCCCCGCTCCGTCAGGCCACGCCCTCCAGCCAGGACTCACGCAACAGATACAGAGCCACTCCTGAGGTAGTAGCAGCTCCCAAGGTCGAGCCTCCAAAATGGTCCAAACCCTCCACACCCATTAGGAGAGGTCCTTCAGAGTCGGAGTCAGAAGAAAGTTACCCCTCAATTCCCAGAGCAGACCACTCATCTGTACACGAgagtGTTCCAGAAACACAAGTGCAATCAGTCCAAAGTAAACCCCAGACATTTTACAGACCACCCTCTCCTGAAAGACCTCCATCTGAAGACTCCTCTGTTTCTGAAAGAGGCCCTTTACCCACCAGGAGATCAGGCAGCAGTGATCAGGACAGCAACCACAGCTCTCCTGCAGTTTACCAGCCGAATTCCACTCTGCGGTCTGACTCATCCAAACCCAGCCTACCCAGGATAAATGGTAAGCCAGTAGAGGAGCCCCTGTACTCCCTGCCTCCAGATGCAGTTCCAGTACCTAACACAGGGTACAGCTCAGACCAGAAATCGGTGGGCTTTGTTAAGGAGGGGAGCATGGGACTCCGGCTGGTGGGAGGAAACGATGTAGGGATTTTTGTGGGCGGGGTCCAGCCTAACAGCCCCGCCCAGAGGCAGGGCATGAAAGAAGGAGATCAGATTCTGGAGGTTAACGGAGTCGACTTTGGTCACTTTACCAGAGAGGAGGCTGCCATGTTCCTCATGAACATTCGTACTGGAGATCGTATCAACATCCTCACTCAGAATAAAATGGACATTTATAAGAAGATCCTGAAGTCCAACCTTGGTGATTCTTTCTACATCCGCACACACTTCGACCACGAGGTGGAGGGCACCCACGGCCTGGCCTTCACTCGAGGAGAGGTATTCAGAGTGGTGGACACAATGCACCGGGGCAAACTGGGCAACTGGCTGGCCATTCGCATGGGTAACGACCTCCACGAGCAAGACAAAGGCACCATCCCCAACCAGACCAGGGCTGAAACTCTAGCCAGCGTGGAGCAAACTCAGAGAATCCAGGGAGCCGAGCGACAAGCATCAGGCCCCAGGGCAGAGTTCTGGAAATTACGGGGTCTCAGAGGGGCCAAGAAGAATGTGAGAAGGACACGAGACGACCTTCTTCAGTTGACCATCCAGGGCAAGTTTCCAGCATACGAGAAGGTGCTGctgagagaggCCAGCTTTAAACGTCCTATTGTTGTTATGGGTCCACTGAATGACATTGCGAATGAGAAGCTGTCTAGAGAAATGCCCAATGAATATGAGATTGCAGAAATGGTCCCAAGGAGTGGTGGAGACAGTGCGTCCTCAGTCATTAAGCTGGATACTgtgagaaaaatatcagaacagGACAAGCATCCCCTGCTGGACATCACCCCTACTGCAGTAGAGAGGCTCAGTTATATTCAATATCACCCAATCGTGATGTTCTTGGATCCACACAACCGCAAAGATGTTAAAACCATGAGGCAGAGATACTCTCCCAACTCTAACAAAAGCTCACGCAAACTCTACGCCCAAGCCCTGAAGCTCAGGAAGCACTACAGCCAACTCTTTGCTGGCCGTATTGACCTGCAACCCAATTCAAACGTGTGGTACGAAATTCTTAAAGACAAGATTCGCCAGCAGCAGTCTAAGCCTGTCTGGGTCTCAGAGATCACGCTTGAAAGTGGTGTTGATGAGGAACTGGATGCCTTCAACCGCGCCAATAACGCTGATTATCTCAGTGGAGCCAGTGACTACGAGGACACCGACGGTGAAGCCTACACTGATGGTGAGGCCTACACTGACAACGAGGATCTGGAAGAACCCCCCTCCACCCAGCCGGGCATCATCGGGCGGAGAGGCACTGCTCTGGCCCGCTCCTCAGAACCAGCAGCCAGACAGAGCCCCAGCCCCGAGCTGGCCCAGGATGAGGAGCATGAATATACCTTACCCCCTATCCTCCACGTCCCAGAGCCACTGTCTCTACGCCACTCCCCAGTGGCACCCCCAGACCTAGAGGATTCTCCATCACCCACCCAGCGCAGCTTCTCCGACTCGGACTTCAACACCGACTTCGCTCCACCCACCACCCCCTCAGAGGGCCCACCAGATTTCAGGGCCCCGGACCCCACAGAGTTCTTCCCAGAGAGCCCGCAACCGGTCACTCTGTCCACCATAGAGGACAAACTACAACAGacTCGTATGGCAGAACCAGAAGTGAAGCCGGCTCCCCCATTTGTTGTGTTGGCACATCATGAAGCAATGATGATGAGAAGAACCCAAATCAGAGGCAGCGACAGCTCTgcggatgatgatgatgatgactatAATGACGAAGATGAAACTGATGATATGGAATGGGGTCCAGCCACAGAGCTCTAATACACCCAGACTTATCTGATACACAAGACGTTTGTGGACTCATGGACAGCCATATCTGTGGAAACAGtgtgaaaatgattttttattaaagagccGACCTTGTGGACGTACTCTAAGCACTCTGACCTCTGGAAAAATTTTCTAAGGATTAATCTGGGGCtcctttgatttgatttttttttctacactgttGGACATTTTTACAGTGAATTGTTGCCTTAGAGAGATTGGGCATAttttataaactgtttttaatctcaatgtgtattttaaaataaaagcatttaataGTCATCAGTGATGGTAAATGCAAGCAGTAGTCACACCATATTGTAATTAGGCACTATACTACACACAAAGGCAATATGAACAATGAATAATGAACAATGCTGACAGACTAGACCAGATGAGCCTTCctgcctaaataaataaacaatacacaAAATAGCCATAACATTTAAACAGCAAAACCACTGACAAATGAACAGGTAAACAGGTAAACACTGTGACATGATAACTATAGACAACAGAAGTCAGAAAATCTCCAAATAGGCATAGGCAGGTCTTGTCAGGTGTTCCCGGCATGCAGTGTTGGCTACCCACCTAAAAACTTGCAGGACAGATGGGTGCATGCAAAGATACCAAAGCCTTGTCCTGTTTCATTATTACATTGTTCTGTTTCGAAGATAcatattcagtgtgttttcagtcccttgaaaataaaacagtatgatGGTTTTGACGACACTAATGTTTTGAAGGTTCAAAGGTTATTTTTTATGGaaataactaaattattaaAGAAAGATATTCAAAACTTGAA
>XM_007252647.3
aatagagagagagagatactgaaacTGAGAGGAGGAACAGGTGTGAAGTTTGGAGCACCTGACTGTGGATTAAGCTTCGTTTCCTGGCTGTACTCGCTGTGAGAGAGAGAAAGCAGACATGGAGGAAATGACGATATGGGAGCAGCACACTGTGACTCTAAACAAAGACCCTAAAGTGGGCTTCGGCTTTGCTGTCTCGGGTGGGAGAGACAAGCCAAATCCAGCCAATGGAGACACGGCGGTGATCGTCTCTGACGTGCTTCCCAGTGGGCCGGCTATGGGCCGACTCCAgacaAGAGATCAGATAGTGATGGTGAACGGAGTGTCTGTGGAGAACTCCACCTCCCTCTACACCATTCAGCACCTCAAGAGCTGTGGCAAAACAGCCAATATAACCATAAAGAGGCCACGAAAGATTCAGGTCCCGTCCAGCAACAGGCCCACTCGCGCTTCCTCTCAGTCCAACCTGCTGGATAATGACCGATATGAGCAGAGACCTCGCCGAGGGTCAGACGGGTACACCCGCCGCCCCCGCAGCGCCACACCAGAGCGCAACGGCCACGACCTGCCCCTCATGTCCGGCTTTAAAAGACTGCCCAATCAGGACGTGCAAGACAAGCCCATCAAAACCACACTGATCAAGAAGAAGCCCACAGATGAGTACGGGATGAAGCTGGGGAGTCAGATTTTCATTAAACACATGACCGCCACCGGTCTGGCTGCAAAAGAAGGCACACTGCAGGAGGGTGATCTTGTGCTGAAGATTAATGGAATGACCACAGAGAACCTCTCACTGCTTGAGACCAAGCACTTGGTAGAGAAGTCCAGAGGTAAACTGACCATGGTGGTCTTGAGGGACAACAGGAAGTTTCTGGTCAGTATTCCTGAGGTGGAGGACAGTCCTGAGAACAGTGCAGATGAGAGATACAAGGAGAGCAGCTCTGAACTGGAAGATATTTCGGATCTGGATACAGATGAGCGAGCGAACAGATCTCGTCCAGTTGCACGAGAGCGACGCACACGCAgAAACAGAACTGAAGCTGCTGCTCCTTCCAAAGCACGTGACTCGTCCCCTCTGCACTCCACCCTGACACGGCCAGTCGCCCAGTCCAAACCCACGCGCAGGGTTTCGTCAGAATCAGAATCCGACCGCAGCAACTCTCCTCCACCTAAACACGACAGCCTCGATAACCGAGACCGATACAGAGTGCTCTCAGGTGTCTCCACGCTGCCGAACCCTCGAGCTTCTCCCGTGCCTTATAACTTGAACGCTCCTCACAACACATCCTCAGCCTCACGGCCACGCAGAGctgtttctgagtctgatTCAGACAGGAGTGCCTCTCCACCACCCAGACGAGAGAGTCCCAAACAAGACCCTCACTCCAGATACAAGGTTCTTCCTGACCTTCCTCCACCTGGCTTGAAGACATCTACCATGAGCCGCTCCCAGGAGCTCCTCAACCGTGGGGCGTCCCCATACAGACCCCCACCACGAGATTCTGAGTCCGATTCAGACCAAAGCTCTGGACCCCCGCTCCGTCAGGCCACGCCCTCCAGCCAGGACTCACGCAACAGATACAGAGCCACTCCTGAGGTAGTAGCAGCTCCCAAGGTCGAGCCTCCAAAATGGTCCAAACCCTCCACACCCATTAGGAGAGGTCCTTCAGAGTCGGAGTCAGAAGAAAGTTACCCCTCAATTCCCAGAGCAGACCACTCATCTGTACACGAgagtGTTCCAGAAACACAAGTGCAATCAGTCCAAAGTAAACCCCAGACATTTTACAGACCACCCTCTCCTGAAAGACCTCCATCTGAAGACTCCTCTGTTTCTGAAAGAGGCCCTTTACCCACCAGGAGATCAGGCAGCAGTGATCAGGACAGCAACCACAGCTCTCCTGCAGTTTACCAGCCGAATTCCACTCTGCGGTCTGACTCATCCAAACCCAGCCTACCCAGGATAAATGGTAAGCCAGTAGAGGAGCCCCTGTACTCCCTGCCTCCAGATGCAGTTCCAGTACCTAACACAGGGTACAGCTCAGACCAGAAATCGGTGGGCTTTGTTAAGGAGGGGAGCATGGGACTCCGGCTGGTGGGAGGAAACGATGTAGGGATTTTTGTGGGCGGGGTCCAGCCTAACAGCCCCGCCCAGAGGCAGGGCATGAAAGAAGGAGATCAGATTCTGGAGGTTAACGGAGTCGACTTTGGTCACTTTACCAGAGAGGAGGCTGCCATGTTCCTCATGAACATTCGTACTGGAGATCGTATCAACATCCTCACTCAGAATAAAATGGACATTTATAAGAAGATCCTGAAGTCCAACCTTGGTGATTCTTTCTACATCCGCACACACTTCGACCACGAGGTGGAGGGCACCCACGGCCTGGCCTTCACTCGAGGAGAGGTATTCAGAGTGGTGGACACAATGCACCGGGGCAAACTGGGCAACTGGCTGGCCATTCGCATGGGTAACGACCTCCACGAGCAAGACAAAGGCACCATCCCCAACCAGACCAGGGCTGAAACTCTAGCCAGCGTGGAGCAAACTCAGAGAATCCAGGGAGCCGAGCGACAAGCATCAGGCCCCAGGGCAGAGTTCTGGAAATTACGGGGTCTCAGAGGGGCCAAGAAGAATGTGAGAAGGACACGAGACGACCTTCTTCAGTTGACCATCCAGGGCAAGTTTCCAGCATACGAGAAGGTGCTGctgagagaggCCAGCTTTAAACGTCCTATTGTTGTTATGGGTCCACTGAATGACATTGCGAATGAGAAGCTGTCTAGAGAAATGCCCAATGAATATGAGATTGCAGAAATGGTCCCAAGGAGTGGTGGAGACAGTGCGTCCTCAGTCATTAAGCTGGATACTgtgagaaaaatatcagaacagGACAAGCATCCCCTGCTGGACATCACCCCTACTGCAGTAGAGAGGCTCAGTTATATTCAATATCACCCAATCGTGATGTTCTTGGATCCACACAACCGCAAAGATGTTAAAACCATGAGGCAGAGATACTCTCCCAACTCTAACAAAAGCTCACGCAAACTCTACGCCCAAGCCCTGAAGCTCAGGAAGCACTACAGCCAACTCTTTGCTGGCCGTATTGACCTGCAACCCAATTCAAACGTGTGGTACGAAATTCTTAAAGACAAGATTCGCCAGCAGCAGTCTAAGCCTGTCTGGGTCTCAGAGATCACGCTTGAAAGTGGTGTTGATGAGGAACTGGATGCCTTCAACCGCGCCAATAACGCTGATTATCTCAGTGGAGCCAGTGACTACGAGGACACCGACGGTGAAGCCTACACTGATGGTGAGGCCTACACTGACAACGAGGATCTGGAAGAACCCCCCTCCACCCAGCCGGGCATCATCGGGCGGAGAGGCACTGCTCTGGCCCGCTCCTCAGAACCAGCAGCCAGACAGAGCCCCAGCCCCGAGCTGGCCCAGGATGAGGAGCATGAATATACCTTACCCCCTATCCTCCACGTCCCAGAGCCACTGTCTCTACGCCACTCCCCAGTGGCACCCCCAGACCTAGAGGATTCTCCATCACCCACCCAGCGCAGCTTCTCCGACTCGGACTTCAACACCGACTTCGCTCCACCCACCACCCCCTCAGAGGGCCCACCAGATTTCAGGGCCCCGGACCCCACAGAGTTCTTCCCAGAGAGCCCGCAACCGGTCACTCTGTCCACCATAGAGGACAAACTACAACAGacTCGTATGGCAGAACCAGAAGTGAAGCCGGCTCCCCCATTTGTTGTGTTGGCACATCATGAAGCAATGATGATGAGAAGAACCCAAATCAGAGGCAGCGACAGCTCTgcggatgatgatgatgatgactatAATGACGAAGATGAAACTGATGATATGGAATGGGGTCCAGCCACAGAGCTCTAATACACCCAGACTTATCTGATACACAAGACGTTTGTGGACTCATGGACAGCCATATCTGTGGAAACAGtgtgaaaatgattttttattaaagagccGACCTTGTGGACGTACTCTAAGCACTCTGACCTCTGGAAAAATTTTCTAAGGATTAATCTGGGGCtcctttgatttgatttttttttctacactgttGGACATTTTTACAGTGAATTGTTGCCTTAGAGAGATTGGGCATAttttataaactgtttttaatctcaatgtgtattttaaaataaaagcatttaataGTCATCAGTGATGGTAAATGCAAGCAGTAGTCACACCATATTGTAATTAGGCACTATACTACACACAAAGGCAATATGAACAATGAATAATGAACAATGCTGACAGACTAGACCAGATGAGCCTTCctgcctaaataaataaacaatacacaAAATAGCCATAACATTTAAACAGCAAAACCACTGACAAATGAACAGGTAAACAGGTAAACACTGTGACATGATAACTATAGACAACAGAAGTCAGAAAATCTCCAAATAGGCATAGGCAGGTCTTGTCAGGTGTTCCCGGCATGCAGTGTTGGCTACCCACCTAAAAACTTGCAGGACAGATGGGTGCATGCAAAGATACCAAAGCCTTGTCCTGTTTCATTATTACATTGTTCTGTTTCGAAGATAcatattcagtgtgttttcagtcccttgaaaataaaacagtatgatGGTTTTGACGACACTAATGTTTTGAAGGTTCAAAGGTTATTTTTTATGGaaataactaaattattaaAGAAAGATATTCAAAACTTGAA

Function

NR:

description
PREDICTED: tight junction protein ZO-3-like isoform X1

GO:

id name namespace
GO:0030104 water homeostasis biological_process
GO:0048871 multicellular organismal homeostasis biological_process
GO:0005923 bicellular tight junction cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007252645.3 True 4859 mRNA 0.51 30 12257415 12285219
XM_007252647.3 False 4730 mRNA 0.50 30 12248637 12285219

Neighbor

gene id symbol gene type direction distance location
LOC103045466 LOC108429539,LOC108271013,LOC106573581,LOC107599449 coding upstream 8231 12145212 ~ 12240406 (+)
trnaa-agc_12 NA coding upstream 135433 12113132 ~ 12113204 (+)
LOC103025613 ncan,LOC107097932,LOC103150419,LOC107554802 coding upstream 170659 11814497 ~ 12077978 (+)
rfxank rfxank,LOC107554808,LOC107687741,LOC107599486,LOC107719616 coding upstream 480940 11762622 ~ 11767697 (+)
LOC103039618 cirbp,LOC107719610,LOC107655227,LOC107599461 coding upstream 875293 11366265 ~ 11373344 (+)
LOC103046074 hmha1b,LOC108429536,LOC108271042,LOC107655244,LOC107669820 coding downstream 2698 12287917 ~ 12323072 (+)
LOC103021640 pip5k1c,LOC108429534 coding downstream 56395 12341614 ~ 12388429 (+)
LOC103047600 rab11b,LOC108429533,LOC107599444,LOC107655249,LOC107592688,LOC108280567 coding downstream 113054 12398273 ~ 12405148 (+)
march2 march2,LOC106613717,LOC107592682,LOC107655247 coding downstream 122327 12407546 ~ 12419643 (+)
hnrnpm hnrnpm,hnrpm coding downstream 135368 12420587 ~ 12429846 (+)
G41906 NA non-coding upstream 127207 12118432 ~ 12121430 (+)
G41842 NA non-coding upstream 526833 11721332 ~ 11721804 (+)
G41841 NA non-coding upstream 527642 11720121 ~ 11720995 (+)
G41839 NA non-coding upstream 530161 11717135 ~ 11718476 (+)
G41802 NA non-coding upstream 907523 11283237 ~ 11341114 (+)
G41954 NA non-coding downstream 334 12285553 ~ 12285980 (+)
G41961 NA non-coding downstream 42676 12327895 ~ 12328238 (+)
LOC107197698 NA non-coding downstream 146808 12432027 ~ 12437339 (+)
G41975 NA non-coding downstream 169276 12454495 ~ 12456795 (+)
G42070 NA non-coding downstream 349243 12634462 ~ 12634735 (+)
tmem221 tmem221 other upstream 489929 11753887 ~ 11758708 (+)
tmem161a tmem161a,LOC107728546,LOC107687722,LOC107554814,LOC107599454,LOC107719614 other upstream 538954 11669447 ~ 11709683 (+)
G41828 LOC108429549,LOC108271147 other upstream 668308 11571226 ~ 11580329 (+)
LOC103037553 LOC107753862,LOC107597184 other upstream 2225673 9995709 ~ 10022964 (+)
LOC103022991 NA other upstream 3313151 8921928 ~ 8935486 (+)
LOC103047294 gpx4,gpx4a,LOC108429535 other downstream 49125 12334344 ~ 12340913 (+)
G42068 NA other downstream 347597 12632816 ~ 12633429 (+)
G42096 LOC108429524,LOC108271269,LOC103369106,LOC106613566,LOC106574586 other downstream 420340 12705559 ~ 12715028 (+)
G42208 ier5 other downstream 1163373 13448592 ~ 13450477 (+)
LOC103032215 NA other downstream 1223801 13509020 ~ 13522257 (+)

Expression


Co-expression Network