Gene
RNA
| Item | Value |
|---|---|
| gene id | G47583 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000006 |
| NCBI id | null |
| chromosome length | 13024002 |
| location | 10837059 ~ 10873768 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU54130 | False | 3997 | lncRNA | 0.35 | 5 | 10837059 | 10873768 |
| TU54128 | True | 2966 | lncRNA | 0.35 | 2 | 10870778 | 10873768 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000006_10676705_10699710 | NA | coding | downstream | 137177 | 10676367 ~ 10699882 (-) |
| CI01000006_10499329_10508831 | NA | coding | downstream | 327404 | 10499240 ~ 10509655 (-) |
| CI01000006_10453630_10483241 | NA | coding | downstream | 353053 | 10453613 ~ 10484006 (-) |
| CI01000006_10402704_10447782 | NA | coding | downstream | 387958 | 10402695 ~ 10449101 (-) |
| CI01000006_10372387_10387314 | NA | coding | downstream | 449457 | 10372129 ~ 10387602 (-) |
| CI01000006_11320839_11338355 | STXBP1, STXBP1A | coding | upstream | 446694 | 11320462 ~ 11338355 (-) |
| CI01000006_11388077_11391485 | NA | coding | upstream | 513726 | 11387494 ~ 11391485 (-) |
| CI01000006_11459706_11462546 | NA | coding | upstream | 585520 | 11459288 ~ 11462605 (-) |
| CI01000006_11530728_11535297 | NA | coding | upstream | 656598 | 11530366 ~ 11535900 (-) |
| CI01000006_11596063_11609407 | NA | coding | upstream | 721871 | 11595639 ~ 11609407 (-) |
| G47580 | NA | non-coding | downstream | 6222 | 10828900 ~ 10830837 (-) |
| G47545 | NA | non-coding | downstream | 51082 | 10784866 ~ 10785977 (-) |
| G47568 | NA | non-coding | downstream | 59385 | 10776818 ~ 10777674 (-) |
| G47558 | NA | non-coding | downstream | 79517 | 10753158 ~ 10757542 (-) |
| G47544 | NA | non-coding | downstream | 104828 | 10731445 ~ 10732231 (-) |
| G47601 | NA | non-coding | upstream | 31084 | 10904852 ~ 10905287 (-) |
| G47618 | NA | non-coding | upstream | 40043 | 10913811 ~ 10914098 (-) |
| G47622 | NA | non-coding | upstream | 43788 | 10917556 ~ 10925610 (-) |
| G47638 | NA | non-coding | upstream | 100926 | 10974694 ~ 10988803 (-) |
| G47654 | NA | non-coding | upstream | 143995 | 11017763 ~ 11019209 (-) |
| CI01000006_07500281_07507754 | NA | other | downstream | 3326103 | 7500246 ~ 7507976 (-) |
| CI01000006_06974359_06976736 | NA | other | downstream | 3860187 | 6973224 ~ 6976872 (-) |
| CI01000006_04560607_04560993 | NA | other | downstream | 6274991 | 4559509 ~ 4562068 (-) |
| G43549 | NA | other | downstream | 6481631 | 4352510 ~ 4355428 (-) |
| G47658 | NA | other | upstream | 157143 | 11030911 ~ 11033127 (-) |
| CI01000006_11651067_11653761 | SMD3, SNRPD3, SNRPD3L, MGC52856 | other | upstream | 776595 | 11650363 ~ 11654424 (-) |
| CI01000006_12348300_12348961 | GLRX | other | upstream | 1460641 | 12347180 ~ 12349383 (-) |
| CI01000006_12569291_12581457 | CELL, CEL.2, CEL.1 | other | upstream | 1476991 | 12569205 ~ 12582487 (-) |
