plekho2


Basic Information

Item Value
gene id plekho2
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 922757 ~ 963284 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260221.3
gagatactgtgtgtgtgtgagagagagaggcagcacCGTTAACTACATCTCCTTACGCCTCGCAGTTCCTCGTTTCTGAAGCTTCGCGTCATGGTGGATTGGAGAAAGTCTGCAGCGAACAGAAGCGAGATTAATCCGTGTGACTCAAGATAAAGTCCTCCGAGCGCTTTCTGCTCCCGGAACCGACCTTTCACTGCTTTATCATGGAAGATGGCGTTAAAGAAGACCCGGCCAAGCCCAAAGAGGTGAAGGTCACGGGCAAGGCCGGCTGGCTGAAGAAGTCCTCGGGGAAGATCCTGAGCAGCTACAAGGACCGCTATGTCCATCTGGACAAAACAGAAGTGGCATTGTATGACAATGAGGACTTAAAGAACTGCGTGGAGCGGATAGACCTGGAAAACTTCGACAAATGCCACGAGTTACGCGGTCCCTTCCAGAAAAAGCACAGGCTAATACTGACGCGGACTCAGAAGAGTGGGAGTAAGGTCTGTAATGTCAAACTTCAAGCTCAAAatgaagaggagaaagaggCTTGGATCAAGGCGCTCAATGATGGCATCAACCGGGCAAAGAACAAAATCTTTGATGAGgTAAAAATAGATGAAAGTTTGTCTCTGGAGCATGTAACACGCACTCGACCAAAGGGAAACCGTGGTAGAAGGCCACCCACCAGGATACACATGAAAGAGGCTTCCAATATCTCACCCGATGGAATTATGAAACTGGACCTGGATGAAGCCGACAGTATGCCGAATGGAACACACAAAGTAAGTGCTGAAGAGAGTGAACAGAAAGACACCAAACCTCAAATGTCTTCAGCGAAGTCTTTCGATGACATTCAAGAAGAGgctgaagaaaaagaagacgCGCCTCAGAAGAAAGCTGTGAAGCCACCAATGCCTCCATCAAAGGAAAAGAAACCCAGCGAAAAGGAGGAAAGTGAAGCACCTCAGAAGAATGCTATTATGCCACCAATGCCGCCATCAAAGGACAAGAAGCCCTCTCAAAATATGGAAGATGAGGAGCCAGGAGAGGTGATGCAAGAGAAGAAAGTTCAGAAACCACCAATGCCTCCCTCAAAAGAGAACAAACCCAGCATTTCAGACAATGGAGATGCCACTAAAGAGAATGCGTCAGATAGCGGGGTAGAGTCTGAAGCAACACCTACTCCAAGCGAGTTAAGTCCAGCTCCAGAAAGCACTGACGAAGCAGAGACTGGTGAATCTGCCTCACCCAAGACCACAGCCCCTGCACCTGCTCCACCATCCAAAGACAAGAAACCGAGCCAAGCACCTGTTTTAAAGGATAAGGAAAGTTCTTCAGAGGATGACGCTGACAGTCAAGATGATCAAGAGGGAAAAGATGAGGAAGTTAACGTCAGTGTTGAGTCTGAGAAGGCaactgaagaaaaagaagaagcagcagaaaaagaaaaagaagaagacacCATAAAGACAGAAGATCCAACTTTCACTCTCTCAAATAGCATCCCTAAGCCTCAAGGCGTGATGTGGGACTCGCCTACTACAGCTTCAGATGAAGGTTCTGCTAAACAAGATTCTAAGACGTCTGTGAATCTAGACATCACTCAGATTGATGTAAAACCATTAGTTCCTGAACCTGCAAAACCTGCCGTTGAAGTCAAATTAACTCCACATTCAACCCCAGAATCTGTTAAAAAGGTTCCCCCTGCTCCACCCAAGAAGAAACCTGTGAAGCCACCTGTCAAAGTTGAGGACAGTGGTGTGATGAGTGGTGTTGCAGTGTCCACCAGCGTTCTGCTTCCCACTACTGTCACACCCTCATCTGAAGGAGTTGGAAAGAATGAGAATGAGACGAAACCAGACCTTCAGGAAGCCAAAGGTGATGGTGAACGCAAGGTTATGATTTTGTCTCTGAGTAATCAAGGAGCAACTGAAGAGTCTGAAGATGTGTCAGGAGCTGAAGCAGAAGAGAAGTCTGTAGATAGTGGGCAGATCTCAGCCGAGGACTCAGAAAGTGGTGACCAAGTTACGTCATCAGAAGACAAACTTCAGGGAAGTCTCCAGTGCCTAGACGGGGACACCAGCGAGGATGATCTGGAGTCGTCCGACAGCAAGGTTCCAAGCAAGGGCGACCCATCTCCAGCGATCCTGTCTGTTACGTCCAAAACCACTGTGGAGAGCTCGTCCACCAGCCCAGCACCAACCACAGCCTTATCGCGGAGCTCCAAGACAAGGTCATCCTCCACAGGAGACCTTCTCGATATTCAGGTTGAGGCACAAGACAGCGACATAAAGAACTTGCGACAGAAAGTATCGCTAGAGATGAAAGAAACAGGAAAGCTTCTGGGTGAAATAGGACCGAGCAGCGATGAGGAAAATGACCCAGAGGTTTTGCTGGCCACTGCCATGGAGAAGCTAAAGACAGCTGACCAGTTCTTAAAAGAAGCCAAGAGTTTCAAAGAGGCTGAGAACAAGAGCAAAAGAACAAGTTGGTAATAAGAAAGGctcaaatgttcaaaaaatgcgAAATACTGGGTTATTAGCAGATGCTTGAGAGGTGCTTCACTTGTGTTGCCTTTTGgtatttgttggtttgtttgtttgcttcttTCAAGGAGGATCAAGTGCATTTATGTCCCATATCACTTTTTTTCTGGACTACTGCCCAATTGACCAGATCATTGAAATATGTTCAAATCCAGAAATGATGGATTAAATTGTGCCTTTAAATTCTAACTGTATATACAAACCAGCCAAGCATAACAATATGACAtcatccttgtttctacacctattatttgattttttttccttttcaaccTGTTCTTCAACtgtcaggaccaccacagagcagaggATTTTTTCTTGAGTGGCGGGTCATGTTCTGGTAAAA
>XR_455709.3
gagatactgtgtgtgtgtgagagagagaggcagcacCGTTAACTACATCTCCTTACGCCTCGCAGTTCCTCGTTTCTGAAGCTTCGCGTCATGGTGGATTGGAGAAAGTCTGCAGCGAACAGAAGCGAGATTAATCCGTGTGACTCAAGATAAAGTCCTCCGAGCGCTTTCTGCTCCCGGAACCGACCTTTCACTGCTTTATCATGGAAGATGGCGTTAAAGAAGACCCGGCCAAGCCCAAAGAGGTGAAGGTCACGGGCAAGGCCGGCTGGCTGAAGAAGTCCTCGGGGAAGATCCTGAGCAGCTACAAGGACCGCTATGTCCATCTGGACAAAACAGAAGTGGCATTGTATGACAATGAGGACTTAAAGAACTGCGTGGAGCGGATAGACCTGGAAAACTTCGACAAATGCCACGAGTTACGCGGTCCCTTCCAGAAAAAGCACAGGCTAATACTGACGCGGACTCAGAAGAGTGGGAGTAAGGTCTGTAATGTCAAACTTCAAGCTCAAAatgaagaggagaaagaggCTTGGATCAAGGCGCTCAATGATGGCATCAACCGGGCAAAGAACAAAATCTTTGATGAGgTAAAAATAGATGAAAGTTTGTCTCTGGAGCATGTAACACGCACTCGACCAAAGGGAAACCGTGGTAGAAGGCCACCCACCAGGATACACATGAAAGAGGCTTCCAATATCTCACCCGATGGAATTATGAAACTGGACCTGGATGAAGCCGACAGTATGCCGAATGGAACACACAAAGTAAGTGCTGAAGAGAGTGAACAGAAAGACACCAAACCTCAAATGTCTTCAGCGAAGTCTTTCGATGACATTCAAGAAGAGgctgaagaaaaagaagacgCGCCTCAGAAGAAAGCTGTGAAGCCACCAATGCCTCCATCAAAGGAAAAGAAACCCAGCGAAAAGGAGGAAAGTGAAGCACCTCAGAAGAATGCTATTATGCCACCAATGCCGCCATCAAAGGACAAGAAGCCCTCTCAAAATATGGAAGATGAGGAGCCAGGAGAGGTGATGCAAGAGAAGAAAGTTCAGAAACCACCAATGCCTCCCTCAAAAGAGAACAAACCCAGCATTTCAGACAATGGAGATGCCACTAAAGAGAATGCGTCAGATAGCGGGGTAGAGTCTGAAGCAACACCTACTCCAAGCGAGTTAAGTCCAGCTCCAGAAAGCACTGACGAAGCAGAGACTGGTGAATCTGCCTCACCCAAGACCACAGCCCCTGCACCTGCTCCACCATCCAAAGACAAGAAACCGAGCCAAGCACCTGTTTTAAAGGATAAGGAAAGTTCTTCAGAGGATGACGCTGACAGTCAAGATGATCAAGAGGGAAAAGATGAGGAAGTTAACGTCAGTGTTGAGTCTGAGAAGGCaactgaagaaaaagaagaagcagcagaaaaagaaaaagaagaagacacCATAAAGACAGAAGATCCAACTTTCACTCTCTCAAATAGCATCCCTAAGCCTCAAGGCGTGATGTGGGACTCGCCTACTACAGCTTCAGATGAAGGTTCTGCTAAACAAGATTCTAAGACGTCTGTGAATCTAGACATCACTCAGATTGATGTAAAACCATTAGTTCCTGAACCTGCAAAACCTGCCGTTGAAGTCAAATTAACTCCACATTCAACCCCAGAATCTGTTAAAAAGGTTCCCCCTGCTCCACCCAAGAAGAAACCTGTGAAGCCACCTGTCAAAGTTGAGGACAGTGGTGTGATGAGTGGTGTTGCAGTGTCCACCAGCGTTCTGCTTCCCACTACTGTCACACCCTCATCTGAAGGAGTTGGAAAGAATGAGAATGAGACGAAACCAGACCTTCAGGAAGCCAAAGGTGATGGTGAACGCAAGGTTATGATTTTGTCTCTGAGTAATCAAGGAGCAACTGAAGAGTCTGAAGATGTGTCAGGAGCTGAAGCAGAAGAGAAGTCTGTAGATAGTGGGCAGATCTCAGCCGAGGACTCAGAAAGTGGTGACCAAGTTACGTCATCAGAAGACAAACTTCAGGGAAGTCTCCAGTGCCTAGACGGGGACACCAGCGAGGATGATCTGGAGTCGTCCGACAGCAAGGTTCCAAGCAAGGGCGACCCATCTCCAGCGATCCTGTCTGTTACGTCCAAAACCACTGTGGAGAGCTCGTCCACCAGCCCAGCACCAACCACAGCCTTATCGCGGAGCTCCAAGACAAGGTCATCCTCCACAGGAGACCTTCTCGATATTCAGGTTGAGGCACAAGACAGCGACATAAAGAACTTGCGACAGAAAGTATCGCTAGAGATGAAAGAAACAGGAAAGCTTCTGGGTGAAATAGGACCGAGCAGCGATGAGGAAAATGACCCAGAGGTTTTGCTGGCCACTGCCATGGAGAAGCTAAAGACAGCTGACCAGTTCTTAAAAGAAGCCAAGAGTTTCAAAGAGGCTGAGAACAAGAGCAAAAGAACAAGTTGGTAATAAGAAAGGctcaaatgttcaaaaaatgcgAAATACTGGGTTATTAGCAGATCACTTTTTTTCTGGACTACTGCCCAATTGACCAGATCATTGAAATATGTTCAAATCCAGAAATGATGGATTAAATTGTGCCTTTAAATTCTAACTGTATATACAAACCAGCCAAGCATAACAATATGACAtcatccttgtttctacacctattatttgattttttttccttttcaaccTGTTCTTCAACtgtcaggaccaccacagagcagaggATTTTTTCTTGAGTGGCGGGTCATGTTCTGGTAAAA

Function

NR:

description
PREDICTED: pleckstrin homology domain-containing family O member 2-like

GO: NA

KEGG:

id description
K24022 PLEKHO; pleckstrin homology domain-containing family O

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260221.3 True 2877 mRNA 0.46 6 922757 963284
XR_455709.3 False 2782 misc_RNA 0.47 7 922757 963284

Neighbor

gene id symbol gene type direction distance location
immp1l immp1l,LOC107594745 coding upstream 241135 671881 ~ 681622 (+)
LOC103036425 pax6,LOC103036425,LOC108444445 coding upstream 284862 618157 ~ 637895 (+)
cp cp,LOC100533122 coding upstream 389130 479272 ~ 533627 (+)
LOC103032607 LOC108439442 coding upstream 451553 461480 ~ 471204 (+)
LOC103032290 LOC108439433,LOC108271171 coding upstream 475442 417368 ~ 447315 (+)
ankdd1a ankdd1a,LOC107685207 coding downstream 11653 974937 ~ 1000284 (+)
clpx clpx,clpxa,LOC107733949,LOC107737000,LOC107594724,LOC107600713 coding downstream 48355 1011639 ~ 1036934 (+)
ubap1l ubap1l,LOC107096871,LOC103363109,LOC105018181 coding downstream 84960 1048244 ~ 1071616 (+)
rasl12 rasl12,LOC107600716,LOC107685213,LOC107737003,LOC107594763 coding downstream 119267 1082551 ~ 1092167 (+)
LOC103024602 abhd2a,LOC108428500,LOC108270704,LOC107685211,LOC107733946,LOC107737001,LOC107662289 coding downstream 160059 1123343 ~ 1153288 (+)
G39529 NA non-coding upstream 42861 879685 ~ 879896 (+)
G39512 NA non-coding upstream 155143 767338 ~ 767614 (+)
G39511 snrpa1,LOC106587741 non-coding upstream 168920 750822 ~ 753837 (+)
G39506 NA non-coding upstream 172137 745568 ~ 750620 (+)
G39504 NA non-coding upstream 207539 712833 ~ 715218 (+)
G39539 NA non-coding downstream 1644 964928 ~ 967328 (+)
LOC111192491 NA non-coding downstream 190260 1153544 ~ 1159078 (+)
G39616 NA non-coding downstream 222288 1185572 ~ 1186479 (+)
G39621 NA non-coding downstream 245998 1209282 ~ 1209733 (+)
G39622 NA non-coding downstream 246680 1209964 ~ 1214713 (+)
commd2 commd2 other upstream 631735 281585 ~ 291022 (+)
pdcd7 NA other downstream 75289 1038573 ~ 1045347 (+)
G39619 mrpl21 other downstream 243503 1206787 ~ 1209096 (+)
G39626 NA other downstream 256522 1219806 ~ 1220486 (+)
LOC111192492 NA other downstream 302573 1265857 ~ 1268385 (+)
LOC111192494 NA other downstream 447146 1410430 ~ 1413799 (+)

Expression


Co-expression Network