ubap1l (ubap1l,LOC107096871,LOC103363109,LOC105018181)


Basic Information

Item Value
gene id ubap1l
gene name ubap1l,LOC107096871,LOC103363109,LOC105018181
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 1048244 ~ 1071616 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260225.3
TCTTATCTGTGTAAGCAGGTGTCTTCTAGTCTTAAGACCGACCCGGCggcaacatcacacacactcatcctcAGCCCttggagcacacacacacacacacacacacacactccggaAACACAGATCAGCGACAGTGAGAATGGCGTGCCTGAATGAGGTGCACTTTAAACTCCCACTGGGCTCCCTGGAGGAGGTCAAAGAGGAGGTGGAAGCCGTCACAGCTCCGGAAATCACAGCGCCAGACTACCTGAAGGTCCTGCAGGAGACAGAGTATGCATTTAGTCTGGAGAACTGGGTTCTGACGGGCCTGCAGAGCGGCTACAGCACTGACCCTTCTGCAACAGTTCCCACGTCCCCCTCCGGGATGTGTCCTACCTGTCCCCCGTACTGGATGATGTTCAGCAGTCCTCAGGAGAGCAGGCTAGCCAGCCGCTGGAGCAGCGACTTCTGGGAACCCAACCCTCGACCCCGCAGCCGCAGCCTGAACGCTGCCCACTACCGAGCCATGAAAGACCAGGTGAAGTTTACCATTTCCGACTCGGACGAAGACGACTTCTCTGATAATGAAGAGGCTACATTTCCAGGCAACGAAGGAACAAAATGCAGCCCGCCAAGCTTAACAAGACAAGGGCCAGGGGTGAAAGACCTGCAGTCTCGCTGCTCCTCAAACTTCCTCAACCTGCCTTCATCCTGCGGCCTCTCAGCTCAGAGGCATGTCAGATTCAGACAAGCCTCAGTTTCAGACTCCAGATCTACAGGAAGTTCCTACAGGAGAAACCAAAGTACAGACCACAGTGGCTCACATATGCCTTCCCAGTTTGCCTCACAGTCTCCAGGCCTGGCCCTGGCCCTCTCGCGGCCGCTGGGTTCCCACGCTGCTCCCCTGGACTCCTCGGCAGAGCTGCTCTCGGCCCTTAGCCCCGAAGAACGGCAGCTGCTGGAAGCGGTGATGGAACGCGGCTACCCACTGCGTACGGCCATCATCGCCCTGCAGAAGACCGGCCAGAGCAGCCCAGAGCAGATCCTGAGTTACTTGGTTGCATGTGACCGGCTGTGTGAGCTTGGCTATGATGAAGCTCAAGTGGAGGAAGCTCTGGAGATGTTCCAGAACTGCGAGACAAAGGCTGAGGAGTTTCTTCACCTGCTCACACAGTTTCATGAGATGGGCTTCCAGCAAAACGCCATTAAAGAGGTGCTGCTCGTGCACGAAAACCACCGTGAGCGCGCCCTGGAGGAGCTCATGATGCGTGTTGCGTGACCAGATCCCTGTATCTAGAGAAATGGCTTACAACCAAGATTCCCTATCTCAGTTCTTCAtccagcacacctgattcagctCATTCTCCATTTCACAAGCtgtcctgtgattggtcaggtTTAGTGTAGAaatcaaaacatgcaaaatgtgctgaaaagaaaagaaaaagtgctTGGGGGTCCCAGGGCAGATGTTGGAAACCCTTGGCTTTCAGTAATCAGTGAGAACTGTGGCCTTGATGGGAAAGCAAAGCTTTCAGTGCAACTTGTACAGTGGAAATACGCATACAGAGGACATTTAGCTATATTGATTATTCTAGTTGACTTAATTATCAATTAAAGTTTATGACTTTGCATTAAACATGCATTCTTAAACTGTCATAACTTAGAAATCTGTCAAAATGTTATAAATCTTTGTTTACATGTTGACTGAACCTGTTCACATTGTATTTAAGGAATGTTTGTATTAAATGAACTCTGTAATGTATAATGTCTGATTTGtgatttagtgtttagtgttttttttttcaataaatgaGCTTTTCATGa

Function

symbol description
ubap1l Predicted to enable ubiquitin binding activity. Predicted to be involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway. Predicted to be part of ESCRT I complex.

NR:

description
PREDICTED: uncharacterized protein LOC107096871

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260225.3 True 1806 mRNA 0.50 6 1048244 1071616

Neighbor

gene id symbol gene type direction distance location
clpx clpx,clpxa,LOC107733949,LOC107737000,LOC107594724,LOC107600713 coding upstream 11310 1011639 ~ 1036934 (+)
ankdd1a ankdd1a,LOC107685207 coding upstream 47960 974937 ~ 1000284 (+)
immp1l immp1l,LOC107594745 coding upstream 366622 671881 ~ 681622 (+)
LOC103036425 pax6,LOC103036425,LOC108444445 coding upstream 410349 618157 ~ 637895 (+)
cp cp,LOC100533122 coding upstream 514617 479272 ~ 533627 (+)
rasl12 rasl12,LOC107600716,LOC107685213,LOC107737003,LOC107594763 coding downstream 10935 1082551 ~ 1092167 (+)
LOC103024602 abhd2a,LOC108428500,LOC108270704,LOC107685211,LOC107733946,LOC107737001,LOC107662289 coding downstream 51727 1123343 ~ 1153288 (+)
ap2a2 ap2a2,LOC106562310,LOC106587467 coding downstream 88156 1159772 ~ 1194746 (+)
LOC103026058 NA coding downstream 221173 1292789 ~ 1306241 (+)
sdhaf2 sdhaf2,LOC107685224 coding downstream 369139 1440755 ~ 1445223 (+)
G39539 NA non-coding upstream 80916 964928 ~ 967328 (+)
G39529 NA non-coding upstream 168348 879685 ~ 879896 (+)
G39512 NA non-coding upstream 280630 767338 ~ 767614 (+)
G39511 snrpa1,LOC106587741 non-coding upstream 294407 750822 ~ 753837 (+)
G39506 NA non-coding upstream 297624 745568 ~ 750620 (+)
LOC111192491 NA non-coding downstream 81928 1153544 ~ 1159078 (+)
G39616 NA non-coding downstream 113956 1185572 ~ 1186479 (+)
G39621 NA non-coding downstream 137666 1209282 ~ 1209733 (+)
G39622 NA non-coding downstream 138348 1209964 ~ 1214713 (+)
G39625 slc38a7,LOC107711584,LOC107596460,LOC107683258 non-coding downstream 144686 1216302 ~ 1218795 (+)
pdcd7 NA other upstream 2897 1038573 ~ 1045347 (+)
plekho2 NA other upstream 84960 922757 ~ 963284 (+)
commd2 commd2 other upstream 757222 281585 ~ 291022 (+)
G39619 mrpl21 other downstream 135171 1206787 ~ 1209096 (+)
G39626 NA other downstream 148190 1219806 ~ 1220486 (+)
LOC111192492 NA other downstream 194241 1265857 ~ 1268385 (+)
LOC111192494 NA other downstream 338814 1410430 ~ 1413799 (+)
polr2l NA other downstream 348775 1420391 ~ 1427117 (+)

Expression


Co-expression Network